Normal Birds Research Articles

Dietary supplementation with a silicate clay mineral (palygorskite) alleviates inflammatory responses and intestinal barrier damage in broiler chickens challenged with Escherichia coli

This experiment aimed to explore the protective effects of dietary palygorskite (Pal) supplementation on inflammatory responses and intestinal barrier function of broiler chickens challenged with Escherichia coli (E. coli). A 2 × 2 factorial arrangement was designed to assess the effects of Pal administration (0 or 5 g/kg of feed) and E. coli challenge (E. coli or bacterial culture medium) on broilers in a 21-d feeding trial. Birds were randomly assigned into one of the 4 groups, and each group had 8 replicates with ten birds each. The challenged chickens were orally gavaged with E. coli suspended in Luria-Bertani broth on 14 d of age, while unchallenged birds were administrated with an equivalent amount of culture medium. The sampling was performed at 21 d of age. Compared with the normal birds, an oral E. coli challenge reduced final body weight, and decreased feed intake, weight gain, and feed efficiency during the challenge period (P < 0.05). E. coli challenge promoted colonization of E. coli in cecal content and their translocation to internal organs (heart, liver, and spleen) (P < 0.05). E. coli infection also increased levels of pro-inflammatory cytokines in jejunum and ileum possibly through activating the toll-like receptor-4-mediated signaling pathway (P < 0.05). Moreover, E. coli administration increased intestinal mucosal permeability (higher serum D-lactate level and diamine oxidase activity, and lower intestinal mucosal disaccharidase activities), altered intestinal morphology, and downregulated the gene expression of intestinal tight junction proteins (P < 0.05). In contrast, Pal supplementation enhanced growth performance, inhibited colonization of E. coli, reduced intestinal inflammation, decreased intestinal permeability, restored intestinal morphology, and normalized the expression of genes responsible for inflammatory processes and maintenance of intestinal mucosal barrier (P < 0.05), and most of these beneficial effects resulting from Pal administration were independent of bacterial challenge. The results indicated dietary Pal incorporation was effective in improving growth performance and alleviating inflammation and intestinal mucosal barrier damage in broilers challenged with E. coli.

Large-scale spatial drivers of avian schistosomes in Northern Michigan inland lakes.

Avian schistosomes are snail-borne trematode parasites (Trichobilharzia spp.) that can cause a nasty skin rash in humans when their cercariae mistake us for their normal bird hosts. We sought to investigate drivers of the spatial distribution of Trichobilharzia cercaria abundance throughout Northern Michigan lakes. For 38 sites on 16 lakes, we assessed several dozen potential environmental predictors that we hypothesized might have direct or indirect effects on overall cercaria abundance, based on known relationships between abiotic and biotic factors in wetland ecosystems. We included variables quantifying local densities of intermediate hosts, temperature, periphyton growth rates, human land use and hydrology. We also measured daily abundance of schistosome cercariae in the water over a 5-week period, supported by community scientists who collected and preserved filtered water samples for qPCR. The strongest predictor of cercaria abundance was Lymnaea host snail density. Lymnaea density was higher in deeper lakes and at sites with more deciduous tree cover, consistent with their association with cool temperature habitats. Contrary to past studies of human schistosomes, we also found a significant negative relationship between cercaria abundance and submerged aquatic vegetation, possibly due to vegetation blocking cercaria movement from offshore snail beds. If future work shows that these effects are indeed causal, then these results suggest possible new approaches to managing swimmer's itch risk in northern MI lakes, such as modifying tree cover and shallow-water vegetation at local sites.

EFFECT OF GENOTYPE, SEX AND AGE AND ITS ASSOCIATION BETWEEN BODY WEIGHTS AND BODY MEASUREMENTS IN INDIGENOUS CHICKEN POPULATION

A study was carried out to determine the effect of genotype, sex and age and its association between body weights and body measurements in indigenous chicken population. The parent stocks were sourced from the local markets within Dutsin-Ma and its environs. Each parental genetic group was separated into breeding groups of 1:10 cock to hen, respectively on a deep litter. Performance data of body weight (BW), chest girth (CG), body length (BL), shank length (SL), shank circumference (SL), wing length (WL) and keel length (KL), respectively of 120 progenies generated at 4, 8, 12, 16 and 20 weeks of age were analyzed using Statistical Analysis System (SAS, Version, 9.1). Generally, body increased with age. The overall mean obtained were 659.64 g, 20.93 cm, 22.12 cm, 8.00 cm, 11.93 cm, and 8.24 cm for body weight, chest girth, body length, shank length, wing length and keel length, respectively. The effect of genotype on body weight and body measurements were significant (P&lt;0.05). The naked neck chickens had higher values for all the morphological traits, followed by normal and frizzle feathered birds, respectively. Males had significantly (P&lt;0.05) higher body weights and body measurements than females. The phenotypic correlations among growth traits were positive moderate, high and significant (P&lt;0.05). The estimates ranged from 0.49 to 0.73 between body weight and body measurements. Highest estimates were observed between body weight and chest girth (rp=0.73) in naked neck chicken. Correlations between sexes were generally high and positive and ranged from 0.61 to 0.77 and 0.56 to 0.70 in males and females, respectively. The highest (rp=0.77) positive coefficient was recorded between body weight and wing length in males and between body weight and body length (rp=0.71) in the females. This implies that selection for improvement in the linear body traits could lead to improvement in body weight of these chickens.

Research on the bird image in Shanhai Jing

The Classic of Mountains and Seas is the original work of Chinese mythology, which records rich images of gods and mythological stories. Bird is a very important mythological image among them. Through the review of the literature, it can be seen that the birds in Shanhai Jing can be divided into four categories according to their physical characteristics: normal birds, alien birds, human-bird combinations and other categories. According to their functions, they can also be divided into four categories: auspicious bird, ominous bird, medicinal bird, and defensive bird. The paper comprehensively analyzes the bird imagery in the Book of Mountains and Seas from the surface to the inside by classifying the morphological characteristics of birds, analyzing their own functions, and exploring the reasons for ancient bird worship. The bird imagery in Shanhai Jing is a product of totem worship by ancient people. The study not only deepens the understanding of the text of Shanhai Jing, but also provides a deeper exploration of ancient Chinese mythology, with certain research value.

Asymmetric expression of CA2 and CA13 linked to calcification in the bilateral mandibular condyles cause crossed beaks in chickens

Crossed beak is a complex mode of inheritance with prevalence ranging from 0.2 to 7.4% in at least 12 chicken strains worldwide. To reveal the intrinsic factors causing crossed beaks, genes expression patterns in bilateral mandibular condyle between affected and normal birds were characterized by RNA sequencing analysis in the present studies. Crossed beak was induced by short length of unilateral mandibular ramus, and a total of 110 differentially expressed genes were up- or down-regulated in the affected (short) mandibular condyle side as compared to the normal side. Carbonic anhydrase 2 (CA2) and Carbonic anhydrase 13 (CA13) were enriched in the carbonate dehydratase activity, and high-expressed in mandibular condyle and osteoblasts (P<0.05). However, both were low-expressed in short mandibular condyle side of affected birds (P<0.05). The carbonate dehydratase inhibitor experiments confirmed that there is positive association between the calcification and carbonic anhydrase isoenzymes. Quantitative analysis with cetylpyridinium chloride showed a decrease in calcification when the cells were transfected with an anti-CA13 shRNA. Our research suggested that CA2 and CA13 are down-calcified in short-side mandibular condyle, and caused mandibular ramus to grow slowly. CA2 and CA13 have the critical role in crossed beaks by regulating calcification of mandibular condyle.

Modern molecular genetic technologies for forming a list of representatives normal bird microflora

The results of the metagenomic analysis revealed a high phylogenetic and taxonomic diversity of the microbial community of both luminal and mucosal microflora of the bird intestinal microbiome. Analysis of the taxonomic structure of the compared microbiomes showed both similarities and differences in the taxonomic diversity and relative abundance (%) of bacteria of the compared microbiomes at the level of order, class, genus.At the type level, 24 taxonomic categories were identified in the luminal and mucosal intestinal microbiome of birds, at the class level 35, at the order level 75, at the family level 168, at the genus level 350.The main share of the microbial community of the luminal and mucosal microbiome was made up of microorganisms belonging to the Firmicutes, Proteobacteria, Actinobacteria Cyanobacteria, and Bacteroidetes phyla. Comparison of the biological diversity of the colonic and mucosal microbiomes at the phylum level showed that the relative value of Proteobacteria in relation to Firmicutes in the mucosal microbiome was 3.25 times higher, and the ratio of Firmicutes to Bacteroidetes in the colonic microbiome was 3.98 times higher. than in mucosal.At the genus level, differences in the composition of microbiomes were manifested by a greater relative share (in decreasing order) in the luminal microbiome of representatives of the genus Lactobacillus, Candidatus Arthromitus, Romboutsia, Gallibacterium, Campylobacter, Enterococcus, and representatives of the genus Acinetobacter, Staphylococcus, Bacillus and Bradyrhizobium in the mucosal microbiome. An in-depth study of the intestinal microbiota using cultivation techniques and high-tech methods for identifying microorganisms, taking into account the results of metagenomic analysis, can significantly expand the understanding of the species diversity of microbiomes and the functions of representatives of various taxa in maintaining bird health, as well as to form a census of representatives of normal bird microflora.

Effects of dietary supplementation with chlorogenic acid on growth performance, antioxidant capacity, and hepatic inflammation in broiler chickens subjected to diquat-induced oxidative stress

This study was conducted to investigate the protective effects of chlorogenic acid (CGA) on broilers subjected to (DQ)-induced oxidative stress. In experiment 1, one hundred and ninety-two male one-day-old Ross 308 broiler chicks were distributed into 4 groups and fed a basal diet supplemented with 0, 250, 500, or 1,000 mg/kg CGA for 21 d. In experiment 2, an equivalent number of male one-day-old chicks were allocated to 4 treatments for a 21-d trial: 1) Control group, normal birds fed a basal diet; 2) DQ group, DQ-challenged birds fed a basal diet; and 3) and 4) CGA-treated groups: DQ-challenged birds fed a basal diet supplemented with 500 or 1,000 mg/kg CGA. The intraperitoneal DQ challenge was performed at 20 d. In experiment 1, CGA administration linearly increased 21-d body weight, and weight gain and feed intake during 1 to 21 d (P < 0.05). CGA linearly and/or quadratically increased total antioxidant capacity, catalase, superoxide dismutase, and glutathione peroxidase activities, elevated glutathione level, and reduced malondialdehyde accumulation in serum, liver, and/or jejunum (P < 0.05). In experiment 2, compared with the control group, DQ challenge reduced body weight ratio (P < 0.05), which was reversed by CGA administration (P < 0.05). DQ challenge increased serum total protein level, aspartate aminotransferase activity, and total bilirubin concentration (P < 0.05), which were normalized when supplementing 500 mg/kg and/or 1,000 mg/kg CGA (P < 0.05). DQ administration elevated hepatic interleukin-1β, tumor necrosis factor-α, and interleukin-6 levels (P < 0.05), and the values of interleukin-1β were normalized to control values when supplementing CGA (P < 0.05). DQ injection decreased serum superoxide dismutase activity, hepatic catalase activity, and serum and hepatic glutathione level, but increased malondialdehyde concentration in serum and liver (P < 0.05), and the values of these parameters (except hepatic catalase activity) were reversed by 500 and/or 1,000 mg/kg CGA. The results suggested that CGA could improve growth performance, alleviate oxidative stress, and ameliorate hepatic inflammation in DQ-challenged broilers.

Оценка эффективности действия комплекса дополнительного питания «Альгобустер» на резистентность кур кросса «Ломан Браун»

The article presents data on the effect of the «Algobooster» supplemental nutrition complex on the resistance of Lohman Brown chickens. The experiment was carried out in a peasant farm in the Leninsky district of the Moscow region on laying hens at the age of 200 days. The results of the experiment showed that due to a whole complex of valuable nutritional components contained in this preparation, immunological parameters of blood were improved in the experimental groups compared to the control. The bird that received the drug showed better immunity stability than the normal bird, which is confirmed by blood tests.

An evaluation of the protective effects of chlorogenic acid on broiler chickens in a dextran sodium sulfate model: a preliminary investigation

This study was conducted to investigate the protective effects of chlorogenic acid (CGA) on broilers subjected to dextran sodium sulfate (DSS)-induced intestinal damage. One hundred and forty-four 1-day-old male Arbor Acres broiler chicks were allocated into one of 3 groups with 6 replicates of eight birds each for a 21-d trial. The treatments included: 1) Control group: normal birds fed a basal diet; 2) DSS group: DSS-treated birds fed a basal diet; and 3) CGA group: DSS-treated birds fed a CGA-supplemented control diet. An oral DSS administration via drinking water was performed from 15 to 21 d of age. Compared with the control group, DSS administration reduced 21-d body weight and weight gain from 15 to 21 d, but increased absolute weight of jejunum and absolute and relative weight of ileum (P < 0.05). DSS administration elevated circulating D-lactate concentration and diamine oxidase activity (P < 0.05), which were partially reversed when supplementing CGA (P < 0.05). The oral administration with DSS decreased villus height and villus height/crypt depth ratio, but increased crypt depth in jejunum and ileum (P < 0.05). Compared with the control group, DSS administration increased serum glutathione level and jejunal catalase activity and malonaldehyde accumulation, but decreased jejunal glutathione level (P < 0.05). In contrast, feeding a CGA-supplemented diet normalized serum glutathione and jejunal malonaldehyde levels, and increased jejunal glutathione concentration in DSS-administrated birds (P < 0.05). Additionally, CGA supplementation reduced ileal malonaldehyde accumulation in DSS-treated birds (P < 0.05). DSS challenge increased levels of serum interferon-γ and interleukin-6, jejunal interleukin-1β, tumor necrosis factor-α, and interleukin-6, and ileal interleukin-1β and interleukin-6 when compared with the control group (P < 0.05). The elevated serum interferon-γ and ileal interleukin-6 levels were normalized to control values when supplementing CGA (P < 0.05). The results suggested that CGA administration could partially prevent DSS-induced increased intestinal permeability, oxidative damage, and inflammation in broilers, although it did not improve their growth performance and intestinal morphology.

Physical Body Deformity Effects on Differential Growth and Body Traits Development in Commercial Broilers

Physical deformities have been a recurrent challenge on broiler production in the tropics. The effect of physical body deformity (PBD) on differential growth of 550 commercial broiler chicks of Ross308 strain from day-old to 56 days were evaluated. Experimental design was completely randomized Design (CRD), while treatment groups were normal birds (NB), crooked neck (CN), twisted Leg (TL) and crooked neck+twisted leg (CN+TL). Data were collected on body weight (BWT, g), drumstick length (DST, cm), wing length (WGL, cm), shank+toe length (STL, cm) and leg length (LEL, cm); and were subjected to General Linear model (GLM), α=0.05, regression and Tukey’s Honestly Significant Difference (HSD) procedures of Statistical Analytical Systems software, SAS® v8 (2008). Physical body deformity depressed broiler growth and development significantly (P&lt;0.05) with small to large effects sizes (ds = -1.40 to 0.70). The differences in latent growth between deformity groups were significant (P&lt;0.05), of practical ( dS&gt;0.5) and large (f 2&gt;0.4) importance from age 35 to 56 days. The CN+TL broiler group was most significantly depressed by physical deformity with linear growth speed of 0.43, and quadratic late growth speed of -0.19. Most adverse impact of the deformity conditions on growth and body development spanned from 35 to 56 days, and could lead to rejection of live birds at maturity and low profitability of small flock enterprises in the tropics.&#x0D; Keywords: Commercial broilers, Physical abnormalities, Growth and development, Torticollis, Valgus-varus angulation

DETECTION OF GLIOTOXIN BUT NOT BIS(METHYL)GLIOTOXIN IN PLASMA FROM BIRDS WITH CONFIRMED AND PROBABLE ASPERGILLOSIS.

Aspergillosis remains a difficult disease to diagnose antemortem in many species, especially avian species. In the present study, banked plasma samples from various avian species were examined for gliotoxin (GT), which is a recognized key virulence factor produced during the replication of Aspergillus species hyphae and a secondary metabolite bis(methyl)gliotoxin (bmGT). Initially, liquid chromatography-tandem mass spectrometry methods for detecting GT and bmGT were validated in a controlled model using sera obtained from rats experimentally infected with Aspergillus fumigatus. The minimum detection level for both measurements was determined to be 3 ng/ml, and the assay was found to be accurate and reliable. As proof of concept, GT was detected in 85.7% (30/35) of the samples obtained from birds with confirmed aspergillosis and in 60.7% (17/28) of samples from birds with probable infection but only in one of those from clinically normal birds (1/119). None of the birds were positive for bmGT. Repeated measures from birds under treatment suggests results may have prognostic value. Further studies are needed to implement quantitative methods and to determine the utility of this test in surveillance screening in addition to its use as a diagnostic test in birds with suspected aspergillosis.

Effect of prophylactic vitamin C administration on the efficiency of florfenicol or sulfadiazine-trimethoprim antimicrobial therapy in chickens with staphylococcal arthritis

Septic arthritis (SA) in chickens shows improper response to antibacterial therapy. This study evaluates the effect of prophylactic vitamin C administration on the efficiency of sulfadiazine-trimethoprim (SDT) or florfenicol (FF) in broilers with experimental SA. Broilers (210) were randomly allocated into 7 equal groups: (I) negative control (NC) (normal birds); (II) positive control (PC) arthritic birds by injection of Staphylococcus aureus in tibiotarsal joint at the age of 35days; (III) vehicle control (injected with sterile medium); (IV) arthritic FF-treated (20mg/kg/day); (V) arthritic vitamin C + FF-treated (as above + vitamin C at 15g/100L of D.W. from day 25 of age); (VI) arthritic SDT-treated (35mg/kg/day); (VII) arthritic vitamin C + SDT-treated. Antibacterial therapy started at day 39 of age and lasted for 5days. Samplings were performed at the age of 44 and 54days. A long lasting SA with severe fibrinoheterophilic synovitis and reduced body weights developed in PC broilers as compared to NC group (p < 0.05). Oxidative stress was present at sampling 1. Arthritis was not reflected in IL-6 levels of synovial fluid of PC group. None of the antibacterials resulted in completely successful treatment. Vitamin C did not appreciably improve lameness and arthritis scores, although it decreased lipid peroxidation and improved weights of FF treated-arthritic birds. For SDT-treated birds, vitamin C only ameliorated histopathological changes. In conclusion, except for improving body weight in FF-treated birds, prophylactic administration of vitamin C is not associated with improvements in clinical outcome of antimicrobial therapy of broilers with SA, although it ameliorates oxidative stress and some histopathological changes.

Effect Quercetin on Physiological and Productive Performance of females quail exposed to oxidative stress induced by H2O2

Plant polyphenols, particularly flavonoids, are of graet intrigued due to their wide run of natural activities. Quercetin, an omnipresent flavonoid, is known to have antioxidant and antibacterial impacts. The aim of this experiment is to know the effect of adding different levels of quercetin on some productive and physiological Traits of normal and oxidative stress quail birds. In the study, (108) females quail at the (45 days)of age, randomly distributed into six treatments, with three replications per each and reared for (42 days). The experiment treatments, as follows: The first treatment (T1): control group and the second treatment (T2): the birds fed a standard diet and drinking water with hydrogen peroxide (0.01% H2O2 ), the third(T3) and fourth(T4) treatments :The birds fed a standard diet with (400 and 600 mg of Quercetin / kg feed) respectively, normal drinking water. About the fifth (T5) and six (T6) treatments,the birds consumed same as T3 and T4 diet except for supplemented drinking water with (0.01% H2O2).The results indicated that the addition of quercetin to diets of quail birds led to:Significant improvement in the production Traits of natural and stressful quails by increasing egg production rate. Significant improvement of some biochemical indicators in the blood serum of natural and stressful quails birds, such as Estrogen, cholesterol, total protein, globulin, Calcium, AST, ALT, Malondialdehyde enzyme and glutathione concentration. While it did not affect glucose and albumin concentration. In conclusion, our study present that quercetin has huge effect on production and physiological indicators in females quail.

Use of fly larvae Hermetia illucens in poultry feeding: A review paper

The paper presents the review of scientific publications of world literature on the use of the larvae of black soldier fly ( Hermetia illucens) when feeding poultry. Nowadays, the issue of replacing traditional sources of protein when feeding poultry is very urgent, especially in connection with the global food crisis. Insects are the natural food of most birds; thus, the use of fly larvae for feed production has a biological basis. The research results presented in published works show that there are no negative effects on bird health and meat quality when feeding poultry, quail and other birds. In some cases, the experimental groups of birds gained weight slightly more slowly than the control group. Other reports indicate that birds grew at the same rate as normal birds. The quantity and quality of eggs did not differ significantly, but dietary changes affected the colour of yolks and eggshell. The effect of the addition of live larvae to the diet of young turkeys on the weight characteristics of was studied. Replacing 10% of the daily amount of feed with live Hermetia illucens larvae in the diet of turkeys showed that the daily feed intake and body weight gain of the experimental birds were significantly higher compared to the control groups, which led to a significantly higher body weight of chicks at the age of five weeks (2.19 kg vs. 2.015 kg, respectively) and a significantly lower feed conversion rate. Most researchers agree that replacing protein in poultry feed with insect flour should be partial, in the 15–30% range. Feeding with larvae that have undergone processing – grinding, chitin removing, heat treatment – is more preferable than using whole larvae, since the chitinous membrane makes larvae difficult to be digested in the digestive tract of birds.

Integrative analysis of long non-coding RNA and mRNA in broilers with valgus-varus deformity.

Bone abnormality and leg disease in commercial broiler flocks are increasingly prominent, causing serious economic losses to the broiler breeding industry. Valgus-varus deformity (VVD) is a common deformity of the long bone in broilers that manifests as an outward or inward deviation of the tibiotarsus or tarsometatarsus. There is a paucity of studies on the molecular mechanisms of VVD. In this study, 6 cDNA libraries were constructed from spleen samples from VVD birds and normal birds. A total of 1951 annotated lncRNAs, 7943 novel lncRNAs and 30252 mRNAs were identified by RNA-sequencing. In addition, 420 differentially expressed (DE) mRNAs and 124 differentially expressed lncRNAs (adjusted P-value < 0.05) were obtained. A total of 16 dysregulated genes were confirmed by qPCR to be consistent with the results of the RNA-Seq. The functional lncRNA-mRNA co-expression network was constructed using differentially expressed mRNAs and target genes of the differentially expressed lncRNAs. 11 DE genes were obtained from the analysis. In order to gain insight into the interactions of genes, lncRNAs and pathways associated with VVD, we focused on the following pathways, which are involved in immunity and bone development: the Jak-stat signaling pathway, Toll-like receptor signaling pathway, Wnt-signaling pathway, mTOR signaling pathway, VEGF signaling pathway, Notch signaling pathway, TGF-beta signaling pathway and Fanconi anemia pathway. All together, 30 candidate DE genes were obtained from these pathways. We then analyzed the interaction between the DE genes and their corresponding lncRNAs. From these interaction network analyses we found that GARS, NFIC, PIK3R1, BMP6, NOTCH1, ACTB and CREBBP were the key core nodes of these networks. This study showed that differentially expressed genes and signaling pathways were related to immunity or bone development. These results increase the understanding of the molecular mechanisms of VVD and provide some reference for the etiology and pathogenesis of VVD.

Beak and feather disease virus (BFDV) prevalence, load and excretion in seven species of wild caught common Australian parrots.

Pathogens pose a major risk to wild host populations, especially in the face of ongoing biodiversity declines. Beak and feather disease virus (BFDV) can affect most if not all members of one of the largest and most threatened bird orders world-wide, the Psittaciformes. Signs of disease can be severe and mortality rates high. Its broad host range makes it a risk to threatened species in particular, because infection can occur via spill-over from abundant hosts. Despite these risks, surveillance of BFDV in locally abundant wild host species has been lacking. We used qPCR and haemagglutination assays to investigate BFDV prevalence, load and shedding in seven abundant host species in the wild in south-east Australia: Crimson Rosellas (Platycercus elegans), Eastern Rosellas (Platycercus eximius), Galahs (Eolophus roseicapillus), Sulphur-crested Cockatoos (Cacatua galerita), Blue-winged Parrots (Neophema chrysostoma), Rainbow Lorikeets (Trichoglossus moluccanus) and Red-rumped Parrots (Psephotus haematonotus). We found BFDV infection in clinically normal birds in six of the seven species sampled. We focused our analysis on the four most commonly caught species, namely Crimson Rosellas (BFDV prevalence in blood samples: 41.8%), Sulphur-crested Cockatoos (20.0%), Blue-winged Parrots (11.8%) and Galahs (8.8%). Species, but not sex, was a significant predictor for BFDV prevalence and load. 56.1% of BFDV positive individuals were excreting BFDV antigen into their feathers, indicative of active viral replication with shedding. Being BFDV positive in blood samples predicted shedding in Crimson Rosellas. Our study confirms that BFDV is endemic in our study region, and can inform targeted disease management by providing comparative data on interspecies variation in virus prevalence, load and shedding.

Proteomic Characterization of Normal and Woody Breast Meat from Broilers of Five Genetic Strains

Woody breast (WB) is an emergent broiler myopathy that is macroscopically characterized by hardened areas of the Pectoralis major muscle. Five genetic strains (strains 1–5) of mixed-sex broilers were fed either a control or an amino acid (AA)-reduced diet (20% reduction of digestible lysine, total sulfur AAs, and threonine) for 8 wk. Differences between whole-muscle proteome profiles of normal breast (NB; n = 6 gels) and WB tissue (n = 6 gels) were characterized for (1) broiler strains 1–5 that were fed with a control diet and collected at 0 min; (2) strain 5 (control diet) that were collected at 15 min, 4 h, and 24 h; (3) strain 5 (0 min) that were fed with a control and an AA-reduced diet. Birds that yielded WB were heavier and had a greater pH at death (pH0min) than normal birds. Results indicated that 21 proteins were more abundant (P &amp;lt; 0.05) and 3 proteins were less abundant (P &amp;lt; 0.05) in WB compared with NB. The differentially abundant proteins in each comparison were consistently upregulated or downregulated in WB tissue although the different protein profiles were noticed for each comparison. Strains 2 and 5 had more protein profile differences between WB and NB meat than strains 1, 3, and 4, which potentially indicates a stronger genetic component for strains 2 and 5 with respect to WB formation. The proteins that were more abundant in WB compared to NB are involved in carbohydrate metabolism, oxidative stress, cytoskeleton structure, and transport and signaling. Ingenuity Pathway Analysis indicated that regulated pathways in WB were mainly related to carbohydrate metabolism, cellular repair, cellular organization and maintenance, and cell death and survival. The results support the potential causes of WB myopathy, including the presence of hypoxia, oxidative stress, increased apoptosis, misfolded proteins, and inflammation.

High-throughput transcriptome analysis reveals potentially important relationships between lncRNAs and genes in broilers affected by Valgus-varus Deformity (Gallus gallus).

Valgus-varus Deformity (VVD) is an outward or inward deviation of the tibiotarsus or tarsometatarsus, which results in physical distress of chickens and economic loss in poultry industry. While the etiology and pathogenesis of VVD at the molecular level are still not fully understood so far. Here, based on a case/control design with VVD birds and normal birds, we identified genes and lncRNAs which associated with VVD using RNA sequencing. Transcriptome analysis revealed 231 differentially expressed mRNAs and 23 differentially expressed lncRNAs between case and control of leg cartilage. We identified the cis- and trans-regulatory targets of the differentially expressed lncRNAs, and we constructed a functional lncRNA-mRNA co-expression network. Analysis of the network showed that the differentially expressed mRNAs and the target genes of the differentially expressed lncRNAs were enriched in the signaling pathways associated with bone development, including p53, MAPK, Toll-like receptor, Jak-STAT, Hedgehog, and PPAR. The expression levels of DENND4A, FGF10, FGF12 and BMP3 were also determined in cartilage and other six tissues. Overall, our study predicted the mRNAs and lncRNAs related with leg diseases by transcriptome analyses, which might contribute to understand the etiology and pathogenesis of VVD. It established the foundation for the further research on the function of -mRNAs and lncRNAs in skeleton development.

Evaluation via Supervised Machine Learning of the Broiler Pectoralis Major and Liver Transcriptome in Association With the Muscle Myopathy Wooden Breast.

The muscle myopathy wooden breast (WB) has recently appeared in broiler production and has a negative impact on meat quality. WB is described as hard/firm consistency found within the pectoralis major (PM). In the present study, we use machine learning from our PM and liver transcriptome dataset to capture the complex relationships that are not typically revealed by traditional statistical methods. Gene expression data was evaluated between the PM and liver of birds with WB and those that were normal. Two separate machine learning algorithms were performed to analyze the data set including the sequential minimal optimization (SMO) of support vector machines (SVMs) and Multilayer Perceptron (MLP) Artificial Neural Network (ANN). Machine learning algorithms were compared to identify genes within a gene expression data set of approximately 16,000 genes for both liver and PM, which can be correctly classified from birds with or without WB. The performance of both machine learning algorithms SMO and MLP was determined using percent correct classification during the cross-validations. By evaluating the WB transcriptome datasets by 5× cross-validation using ANNs, the expression of nine genes ranked based on Shannon Entropy (Information Gain) from PM were able to correctly classify if the individual bird was normal or exhibited WB 100% of the time. These top nine genes were all protein coding and potential biomarkers. When PM gene expression data were evaluated between normal birds and those with WB using SVMs they were correctly classified 95% of the time using 450 of the top genes sorted ranked based on Shannon Entropy (Information Gain) as a preprocessing step. When evaluating the 450 attributes that were 95% correctly classified using SVMs through Ingenuity Pathway Analysis (IPA) there was an overlap in top genes identified through MLP. This analysis allowed the identification of critical transcriptional responses for the first time in both liver and muscle during the onset of WB. The information provided has revealed many molecules and pathways making up a complex molecular mechanism involved with the progression of wooden breast and suggests that the etiology of the myopathy is not limited to activity in the muscle alone, but is an altered systemic pathology.

Characterization of Caecal Microbiota in Broilers that Differ in Genetic Strain, Nutrition, and Development of Woody Breast

ObjectivesWoody breast (WB) meat from broilers has undesirable textural characteristics, including, crunchiness and stickiness. Genetic, nutritional, and environmental factors are associated with the mechanism of WB development. A diverse microbiota plays an important role on the growth performance and health of the host, and greater than 900 species of bacteria have been isolated in the gastrointestinal tract of chicken. However, minimal information is known about the microbiota in the guts of broilers that yield WB meat. Therefore, the objective of this research was to characterize and compare the bacterial diversity of caecal microbiota in broilers with normal and woody breast fillets.Materials and MethodsThe Institutional Animal Care and Use Committee of Mississippi State University (IACUC-16–542) reviewed and approved all protocols. One-day-old mixed sex broilers from two strains (A2 and B2) were raised in 32 pens in a chicken house. Birds of each strain were randomly assigned to 16 pens (15 birds per pen) and 8 pens were fed a control diet and 8 pens were fed an amino acid reduced diet (digestible lysine, total sulfur amino acids, and threonine reduced by 20% as compared to the control diet). After 8 wk of growth, 4 male broilers with normal breast (1 chick per pen) and 4 male broilers with WB (1 chick per pen) determined by palpation were selected for each treatment (breed × diet). The cecum samples were collected after birds were euthanized and bled. DNA was extracted and amplified using universal primers that target the V3∼4 regions of bacterial 16S rRNA for sequencing in Illumina MiSeq. Raw sequences were processed, and the quality was filtered using the default parameters of Quantitative Insights into Microbial Ecology (QIIME 2). Differences between species were assessed using the unpaired two-tailed Student t test assuming unequal variance at α = 0.05.ResultsData suggested that the most abundant phyla in all samples were Firmicutes, followed by Bacteroidetes and Proteobacteria. Accounting for both abundance and evenness of the species present in each sample (α diversity), results indicated that there was no difference (P &gt; 0.05, pairwise Kruskal–Wallis test) in the diversity of gut microbiota between two phenotypes (normal vs. woody), two strains (A2 vs. B2) or two diets (control vs. reduced). However, principal coordinate analysis plots (β diversity) revealed that the samples were clustered based on the phenotype rather than by the strain or diet. These results revealed that the microbiota of each bird with normal breast was more similar to each other than the microbiota of birds with WB. Among all species (300–400) identified, no difference (P &lt; 0.05) existed in bacterial abundance between the two genetic strains. However, 16 and 13 species were differentially abundant (P &lt; 0.05) between normal and woody breast and between control and reduced diet treatments, respectively. In the ceca of WB birds Selenomonas bovis (12.6%) and Bacteroides plebeius (12.3%) were the top two predominant bacteria; however, the relative abundances of these two bacteria were only 5.1% and 1.2% in normal birds, respectively.ConclusionDifferences in the microbiome may be associated with the development of WB. Further studies are needed to investigate the potential mechanism and how to reduce broiler WB incidence by regulating their gut microbiota.