Nominal Oxidation State Research Articles

Moisture-mineral interactions drive bacterial and organic matter turnover in glacier-sourced riparian sediments undergoing pedogenesis

Glacial recession is occurring at unprecedented rates resulting in increased sediment accumulations in some riverine ecosystems providing new mineral surfaces for soil formation. Soils and sediments have an enormous potential to retain carbon (C), predominantly due to sorption to mineral surfaces. However, C persistence may be sensitive to climate-change induced temperature and moisture variations. We coupled ultrahigh resolution organic matter composition classification with bacterial characterization and respiration measurements to test the combined pedogenic effects of temperature (4 vs 20 °C) and moisture (50 vs 100% water-filled pore space) on C turnover in sediments maintained under different mineralogical conditions (illite-amended vs non-amended). Here we show that the inhibition of CO2 emissions from the combined effect of increased moisture content and illite was reflected in the turnover of key molecular signatures, such as the nominal oxidation state of C, often irrespective of temperature. However, shifts in bacterial communities from a coupled moisture-mineral interaction, were temperature-dependent. Our results highlight the importance of moisture in driving mineral-organic interactions and suggest that C in clay-rich, water-saturated sediments is both thermodynamically unfavorable and mineral-protected from microbial consumption.

Characterisation of dissolved organic matter in two contrasting arsenic-prone sites in Kandal Province, Cambodia

Aquifers throughout Asia are impacted by the release of geogenic arsenic (As) into groundwater by microbial reduction of As-bearing Fe(III) (oxy)hydroxide minerals, severely impacting water quality. Groundwater dissolved organic matter (DOM) is likely key to As release, mainly as electron donor or electron shuttles. This study used optical analyses and ultra-high resolution mass spectrometry to examine the sources and composition of groundwater DOM in the As-prone aquifers of Kandal Province, Cambodia, at boreholes with differing host lithology (clay- and sand-dominated). Groundwater and surface water DOM composition were related to As concentrations, to infer the potential role of DOM in promoting As release. Optical and molecular-level analyses indicated an overall dominance of terrestrial-derived DOM in the groundwater samples, with higher freshness index and relative abundance (RA) of aliphatic compounds in clay compared to sand-dominated lithology. Compared to surface water, groundwater DOM had relatively lower O/C ratios and nominal oxidation state of carbon (−0.19 to −0.13 compared to 0.04 for ground and surface water, respectively), with a lower %RA of aliphatic compounds and higher %RA of carboxyl-rich alicyclic molecules, suggesting microbial processing of DOM since percolation into the aquifer. Concentrations of As across both sites were negatively correlated with DOM tryptophan:fulvic-like fluorescence and the %RA of aliphatics, potentially indicating microbial degradation of biolabile DOM in connection with As release, which is consistent with its role as an electron donor source. Together these data support DOM composition as an important control on microbial mediated As release.

Thermodynamics and explainable machine learning assist in interpreting biodegradability of dissolved organic matter in sludge anaerobic digestion with thermal hydrolysis

Dissolved organic matter (DOM) is essential in biological treatment, yet its specific roles remain incompletely understood. This study introduces a machine learning (ML) framework to interpret DOM biodegradability in the anaerobic digestion (AD) of sludge, incorporating a thermodynamic indicator (λ). Ensemble models such as Xgboost and LightGBM achieved high accuracy (training: 0.90–0.98; testing: 0.75–0.85). The explainability of the ML models revealed that the features λ, measured m/z, nitrogen to carbon ratio (N/C), hydrogen to carbon ratio (H/C), and nominal oxidation state of carbon (NOSC) were significant formula features determining biodegradability. Shapley values further indicated that the biodegradable DOM were mostly formulas with λ lower than 0.03, measured m/z value higher than 600 Da, and N/C ratios higher than 0.2. This study suggests that a strategy based on ML and its explainability, considering formula features, particularly thermodynamic indicators, provides a novel approach for understanding and estimating the biodegradation of DOM.

Improved Characterization of Soil Organic Matter by Integrating FT-ICR MS, Liquid Chromatography Tandem Mass Spectrometry, and Molecular Networking: A Case Study of Root Litter Decay under Drought Conditions.

Understanding of how soil organic matter (SOM) chemistry is altered in a changing climate has advanced considerably; however, most SOM components remain unidentified, impeding the ability to characterize a major fraction of organic matter and predict what types of molecules, and from which sources, will persist in soil. We present a novel approach to better characterize SOM extracts by integrating information from three types of analyses, and we deploy this method to characterize decaying root-detritus soil microcosms subjected to either drought or normal conditions. To observe broad differences in composition, we employed direct infusion Fourier-transform ion cyclotron resonance mass spectrometry (DI-FT-ICR MS). We complemented this with liquid chromatography tandem mass spectrometry (LC-MS/MS) to identify components by library matching. Since libraries contain only a small fraction of SOM components, we also used fragment spectral cosine similarity scores to relate unknowns and library matches through molecular networks. This integrated approach allowed us to corroborate DI-FT-ICR MS molecular formulas using library matches, which included fungal metabolites and related polyphenolic compounds. We also inferred structures of unknowns from molecular networks and improved LC-MS/MS annotation rates from ∼5 to 35% by considering DI-FT-ICR MS molecular formula assignments. Under drought conditions, we found greater relative amounts of lignin-like vs condensed aromatic polyphenol formulas and lower average nominal oxidation state of carbon, suggesting reduced decomposition of SOM and/or microbes under stress. Our integrated approach provides a framework for enhanced annotation of SOM components that is more comprehensive than performing individual data analyses in parallel.

Molecular features of uranium-binding natural organic matter in a riparian wetland determined by ultrahigh resolution mass spectrometry

Tims Branch riparian wetland located in South Carolina, USA has immobilized 94 % of the U released >50 years ago from a nuclear fuel fabrication facility. Sediment organic matter (OM) has been shown to play an important role in immobilizing U. Yet, uranium-OM-mineral interactions at the molecular scale have never been investigated at ambient concentrations. The objectives of this study were to extract, purify, and concentrate U-bound sediment OM along the stream water pathway and perform molecular characterization using Fourier transform ion cyclotron resonance mass spectrometry (FTICRMS). Out of 9614 identified formulas, 715 contained U. These U-containing formulas were enriched with Fe, N, and/or S compared to the total OM. Lignin-like and protein-like molecules accounted for 40 % and 19 % of the U-containing formulas, respectively. Phosphorus-containing formulas were found to exert an insignificant influence on complexing U. U-containing formulas in the ‘mobile’ (groundwater extractable) OM fraction had lower (reduced) nominal oxidation states of carbon (NOSC); and less aromatic moieties than OM recovered from the ‘immobile’ (sodium pyrophosphate extractable) OM fraction. U-containing formulas in the redox interfacial zones (stream banks) compared to those in nearby up-slope zones tended to have smaller molecular weights; lower NOSC; higher contents of COO and/or CONO functional groups; and higher abundance of Fe-containing formulas. Fe was present in 38 % of the U-containing formulas but only 20 % of the total OM formulas. It is postulated that Fe played an important role in stabilizing the structure of sedimentary OM, especially U-containing compounds. The identification for the first time of hundreds of Fe-U-OM formulas demonstrates the complexity of such system is much greater than commonly believed and numerically predicting U binding behavior in OM-rich systems may require greater use of statistical or artificial intelligence approaches rather than deterministic approaches limited to measuring metal complexation with well-defined individual analogue organic ligands.

Characterization and differentiation of dissolved organic matter in leachate derived from an old Japanese landfill site through Orbitrap mass spectrometry

Elucidating the characteristics of dissolved organic matter (DOM) is crucial to assessing its impact on the bioavailability and mobility of pollutants in landfill leachate. This study reports a comprehensive 5–month investigation into the characteristics of DOM in leachate from an old Japanese landfill, collected at six different sampling points. The molecular composition, chemical properties, and structural characteristics of DOM were assessed using Orbitrap mass spectrometry and spectral analysis. The leachate DOM mainly consisted of CHO-containing molecules (58.5–88.9%), low-oxygen unsaturated phenolic compounds (40.5–54.0%), and aliphatic compounds (19.4–47.3%), with slight variation among sampling points. A significant portion of the nominal oxidation state of carbon was in the reduced zone (76.2–95.4%). The results underscore the distinct molecular composition of DOM in mature Japanese landfill leachate compared to young and mature leachates from other countries. Two of six sampling points, with notable differences in molecular characteristics, were compared and elucidated. The composition of landfill waste, rather than landfill age, was the main factor affecting the characteristics and differentiation of leachate DOM.

Changes in coal waste DOM chemodiversity and Fe/Al oxides during weathering drive the fraction conversion of heavy metals

The long-term accumulation of coal waste on the surface during natural weathering leads to the inevitable migration of heavy metals contained in the coal waste, which increases the likelihood of environmental contamination and health risks. Dissolved organic matter (DOM) and Fe/Al oxides play crucial roles in the transformation and bioavailability of heavy metals. Thus, we analyzed the Fe/Al oxide content and DOM molecular composition in coal waste with different degrees of weathering and explored the influence of DOM chemical diversity and Fe/Al oxides on the potential mobility of heavy metals. Results showed that weathering-driven decrease in Fe oxides (Fed, FeO, and Fep decreased from 82.4, 37.5, and 3.6 mg∙L−1 to 41.3, 24.7, and 2.3 mg∙L−1, respectively) led to decreases in the reducible fractions of V and Cr. The potential environmental risks of more toxic metals of Cd and As, also increased as a result of the residual fractions decreased to 32.6 % and 41.3 %, respectively. Weathering caused an increase in oxygen-to‑carbon ratio, double-bond equivalent, modified aromaticity index, nominal oxidation state of carbon, and molecular diversity and a decrease in (m/z)w and (H/C)w, suggesting that the DOM of highly weathered coal waste possessed high unsaturation, aromatic structures, hydrophilicity, and strong oxidative characteristics. Additionally, although VMF and CrMF showed significant negative correlations with O/C ratio, polyphenolic, carbohydrates, and condensed aromatics, pH remained a key environmental factor determining the potential environmental risks of V and Cr by changing the residual fractions. The mobilities of Cd and As were significantly negatively correlated with those of Fe/Al oxides, particularly Fed, FeO, Fep, and Alp. Our findings contribute to the understanding of the impact of weathering on the geochemical cycling of different coal waste components, providing priority options for environmental risk prevention and control in coal mining areas.

Dissolved organic nitrogen is a key to improving the biological treatment potential of landfill leachate

Biological treatment is one of the most promising efficient, low-carbon and affordable approaches for the treatment of recalcitrantly degradable wastewater, such as landfill leachate. However, even the macroscopic molecular level analysis of dissolved organic matter (DOM) is limiting to the enhancement of biological treatment efficacy, and there is an urgent need for deeper exploration of DOM to gain insights into the key constraining substances. In the present study targeting at piercing leachate organic at molecular level, nitrogen-containing dissolved organic matter (DOMN) was identified to be the bottleneck that govern the biotreatment potential. The conclusion was made based on two series of experiments that compared the same anoxic-aerobic membrane bioreactor process (A process) operated stably at different regions, and compared with C process that coupling A process with a circulation aeration membrane bioreactor to improve aeration efficiency. The results confirmed that the relative abundance of DOMN was absolutely dominant among the three categories of DOM in all biologically treated samples, contributing to 60.36 %–65.81 % in removed-DOM, 60.33 %–70.95 % in refractory-DOM and 63.14 %–71.36 % in derived-DOM. Specifically, the high latitude A process had much lower DOMN removal rate than the low latitude A process (p < 0.05) and much higher refractory and derivatization rates than the low latitude A process (p < 0.05). DOM had similar results. No statistically significant differences were observed in the proportion of the three categories of DOM (DOMN), the elements composition, and the subcategory composition of the C process compared to the A process, in which the DOM (DOMN) derivation rate of NEC1-C (31.92 % and 33.41 %) was much higher than that of NEC1-A (20.88 % and 22.19 %). However, the AIwa and AImodwa of the derived-DOM (DOMN) were significantly higher in the C process than in the A process, which implied that excessive aeration did not enhance the biological treatment potential of the A process, but instead led to the proliferation of microorganisms and the secretion of extracellular polymer substances, which resulted in the derivation of more complex compounds. The results of the correlation analysis indicated that there were some regional differences in the molecular information of DOMN driven by climate temperature. In addition, it was worth mentioning that the nominal oxidation state of carbon (NOSCwa) of derived-DOMN in different regions of A process was noticeably higher than the corresponding DOM (p < 0.0001), implying that the derived-DOMN were still highly biodegradable, in other words, there was still great room for improving the biological treatment potential of landfill leachate. The present study provided a deeper insight and analysis of landfill leachate at the molecular level (DOMN) through multiple practical engineering cases, with a view to providing a theoretical basis for efficient optimization of biological treatment.

Spatial gradients and molecular transformations of DOM, DON and DOS in human-impacted estuarine sediments

Dissolved organic matter (DOM) constitutes the most active fraction in global carbon pools, with estuarine sediments serving as significant repositories, where DOM is susceptible to dynamic transformations. Anthropogenic nitrogen (N) and sulfur (S) inputs further complicate DOM by creating N-bearing DOM (DON) and S-bearing DOM (DOS). This study delves into the spatial gradients and transformation mechanisms of DOM, DON, and DOS in Pearl River Estuary (PRE) sediments, China, using combined techniques of UV–visible spectroscopy, Excitation–emission matrix (EEM) fluorescence spectroscopy, Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS), and microbial high-throughput sequencing. Results uncovered a distinct spatial gradient in DOM concentration, aromaticity (SUVA254), hydrophobicity (SUVA260), the content of substituent groups including carboxyl, carbonyl, hydroxyl and ester groups (A253/A203) of chromophoric DOM (CDOM), and the abundances of tyrosine/tryptophan-like protein and humic-like substances in fluorophoric DOM (FDOM). These all decreased from upper to lower PRE, accompanied by a decrease in O3S and O5S components, indicating seaward reduction in the contribution of terrestrial OM, especially anthropogenic inputs. Additionally, sediments exhibited a reduction in molecular diversity (number of formulas) of DOM, DON, and DOS from upper to lower PRE, with molecules tending towards a lower nominal oxidation state of carbon (NOSC) and higher bio-reactivity (MLBL), molecular weight (m/z) and saturation (H/C). While molecular composition of DOM remained similar in PRE sediments, the relative abundance of lignin-like substances decreased, with a concurrent increase in protein-like and lipid-like substances in DON and DOS from upper to lower PRE. Mechanistic analysis identified the joint influence of terrestrial OM, anthropogenic N/S inputs, and microbial processes in shaping the spatial gradients of DOM, DON, and DOS in PRE estuarine sediments. This study contributes valuable insights into the intricate spatial gradients and transformations of DOM, DON, and DOS within human-impacted estuarine sediments.

Carbon Fate, Iron Dissolution, and Molecular Characterization of Dissolved Organic Matter in Thawed Yedoma Permafrost under Varying Redox Conditions.

Permafrost soils store ∼50% of terrestrial C, with Yedoma permafrost containing ∼25% of the total C. Permafrost is undergoing degradation due to thawing, with potentially hazardous effects on landscape stability and water resources. Complicating ongoing efforts to project the ultimate fate of deep permafrost C is the poorly constrained role of the redox environment, Fe-minerals, and its redox-active phases, which may modulate organic C-abundance, composition, and reactivity through complexation and catalytic processes. We characterized C fate, Fe fractions, and dissolved organic matter (DOM) isolates from permafrost-thaw under varying redox conditions. Under anoxic incubation conditions, 33% of the initial C was lost as gaseous species within 21 days, while under oxic conditions, 58% of C was lost. Under anoxic incubation, 42% of the total initial C was preserved in a dissolved fraction. Lignin-like compounds dominated permafrost-thaw, followed by lipid- and protein-like compounds. However, under anoxic incubation conditions, there was accumulation of lipid-like compounds and reduction in the nominal oxidation state of C over time, regardless of the compound classes. DOM dynamics may be affected by microbial activity and abiotic processes mediated by Fe-minerals related to selective DOM fractionation and/or its oxidation. Chemodiversity DOM signatures could serve as valuable proxies to track redox conditions with permafrost-thaw.

Interactive effects of microbial functional diversity and carbon availability on decomposition – A theoretical exploration

Microbial functional diversity in litter and soil has been hypothesized to affect the rate of decomposition of organic matter and other soil ecosystem functions. However, there are no clear theoretical expectations on how these effects might change with substrate availability, heterogeneity in the substrate chemistry, and different aspects of functional diversity itself (number of microbial groups vs. distribution of functional traits). To explore how these factors shape the decomposition-diversity relation, we carry out numerical experiments using a flexible reaction network comprising microbial processes and interactions with bioavailable carbon (extracellular degradation, uptake, respiration, growth, and mortality), and ecological processes (competition among the different groups). We also considered diverse carbon substrates, in terms of varying nominal oxidation state of carbon (NOSC). The reaction network was used to test the effects of (i) number of microbial groups, (ii) number of carbon pools, (iii) microbial functional diversity, and (iv) amount of bioavailable carbon. We found that the decomposition rate constant increases with increasing substrate concentration and heterogeneity, as well as with increasing microbial functional diversity or variance of microbial traits, albeit these biological factors are less important. The multivariate dependence of the decomposition rate constant (and other decomposition and microbial growth metrics) on substrate and microbial factors can be described using power laws with exponents lower than one, indicating that diversity effects on decomposition and microbial growth are reduced at high substrate concentration and heterogeneity, or at high microbial diversity.

Unraveling the persistence of deep podzolized carbon: Insights from organic matter characterization

Over a billion tons of terrestrial carbon (C) is stored in deep soils from the Southeastern Coastal Plain of the United States. While the size and extent of this pool, known as deep podzolized carbon (DPC), have been reported in recent studies, the stabilization mechanisms responsible for its persistence are unclear. The main hypothesis of DPC stabilization is that hydrology, specifically water table fluctuations in the phreatic zone, slow microbial degradation and promote C accumulation. This accounts for the characteristic properties and distribution of DPC and provides a mechanistic distinction between DPC and shallow podzolized C in the region's soils, however it has yet to be tested. We characterized the organic matter composition of the bulk and dissolved fractions of DPC using elemental analysis, solvent extraction, infrared spectroscopy, and high-resolution mass spectrometry. Consistent with past work, the majority of DPC organic matter was extractable by sodium pyrophosphate solution; the influence of metal association was also observable in the water extractable fraction of DPC with large species being preferentially removed and a low compound diversity compared to those from other horizons overlying DPC. Only water extractable species with low molecular mass (m/z < 375 Da) showed significant change in average nominal oxidation state of carbon (NOSC) values, indicative of oxygen-limitation influence on the processing of these species. Infrared spectroscopy revealed an increase in abundance of aliphatic (C-H:C-O) bonds relative to polysaccharide bonds with depth whereas aromatic (C=C:C-O) bonds decreased with depth in DPC relative to other subsurface horizons. Our work shows that DPC is significantly more refractory than overlying surface soil C, and yet slightly more labile than the subsoils above DPC. Together our results suggest that the maintenance of low redox conditions via persistent water saturation contributes to the stabilization and persistence of DPC.

Effect of isosymmetric phase transition in MIEC perovskite on the kinetic parameters of its interaction with oxygen

Oxygen partial pressure relaxation technique was used to study transient kinetics of re-equilibration in the reaction of nonstoichiometric oxide Ba0.5Sr0.5Co0.75Fe0.2Mo0.05O3-δ with oxygen within a region of 3-δ stoichiometry close to the nominal oxidation state 3+ for cobalt where an isosymmetric phase transition cubic perovskite P1 – cubic perovskite P2 is observed. The relaxation data were analyzed using a macrokinetic model that explicitly takes into account the power-law dependence of the surface reaction rate on the oxygen partial pressure. A twofold decrease in the power-law exponent (n = 0.7 to n = 0.3) was found at the point of the P1-P2 phase transition, which indicates a change in the mechanism of the rate-determining step of the reaction caused by the transition. At the same time, the functional dependence of the diffusion mobility of oxygen vacancies on the equilibrium oxygen pressure does not change at the transition point, which means that the transition does not affect the mechanism of bulk vacancy mobility.

Riverine organic matter functional diversity increases with catchment size

A large amount of dissolved organic matter (DOM) is transported to the ocean from terrestrial inputs each year (~0.95 Pg C per year) and undergoes a series of abiotic and biotic reactions, causing a significant release of CO2. Combined, these reactions result in variable DOM characteristics (e.g., nominal oxidation state of carbon, double-bond equivalents, chemodiversity) which have demonstrated impacts on biogeochemistry and ecosystem function. Despite this importance, however, comparatively few studies focus on the drivers for DOM chemodiversity along a riverine continuum. Here, we characterized DOM within samples collected from a stream network in the Yakima River Basin using ultrahigh-resolution mass spectrometry (i.e., FTICR-MS). To link DOM chemistry to potential function, we identified putative biochemical transformations within each sample. We also used various molecular characteristics (e.g., thermodynamic favorability, degradability) to calculate a series of functional diversity metrics. We observed that the diversity of biochemical transformations increased with increasing upstream catchment area and landcover. This increase was also connected to expanding functional diversity of the molecular formula. This pattern suggests that as molecular formulas become more diverse in thermodynamics or degradability, there is increased opportunity for biochemical transformations, potentially creating a self-reinforcing cycle where transformations in turn increase diversity and diversity increase transformations. We also observed that these patterns are, in part, connected to landcover whereby the occurrence of many landcover types (e.g., agriculture, urban, forest, shrub) could expand DOM functional diversity. For example, we observed that a novel functional diversity metric measuring similarity to common freshwater molecular formulas (i.e., carboxyl-rich alicyclic molecules) was significantly related to urban coverage. These results show that DOM diversity does not decrease along stream networks, as predicted by a common conceptual model known as the River Continuum Concept, but rather are influenced by the thermodynamic and degradation potential of molecular formula within the DOM, as well as landcover patterns.

Organic carbon preservation in wetlands: Iron oxide protection vs. thermodynamic limitation

The sequestration of organic carbon (OC) in wetland sediments is influenced by the presence of oxygen or lack thereof. The mechanisms of OC sequestration under redox fluctuations, particularly by the co-mediation of reactive iron (Fe) protection and thermodynamic limitation by the energetics of the OC itself, remain unclear. Over the past 26 years, a combination of field surveys and remote sensing images had revealed a strong decline in both natural and constructed wetland areas in Tianjin. This decline could be attributed to anthropogenic landfill practices and agricultural reclamation efforts, which may have significant impacts on the oxidation–reduction conditions for sedimentary OC. The Fe-bound OC (CBD extraction) decreased by 2 to 10-fold (from 8.3 to 10% to 0.7–4.5%) with increasing sediment depth at three sites with varying water depths (WD). The high-resolution spectro-microscopy analysis demonstrated that Fe (oxyhydr)oxides were colocalized with sedimentary OC. Corresponding to lower redox potential, the nominal oxidation state of C (NOSC), which corresponds to the energy content in OC, became more negative (energy content increased) with increasing sediment depth. Taken together, the preservation of sedimentary OC is contingent on the prevailing redox conditions: In environments where oxygen availability is high, reactive Fe provides protection for OC, while in anoxic environments, thermodynamic constraints (i.e., energetic constraints) limit the oxidation of OC.

The transformation of dissolved organic matter and formation of halogenated by-products during electrochemical advanced oxidation pretreatment for shale gas produced water

Electrochemical advanced oxidation processes (EAOPs) have shown great potential for the treatment of shale gas produced water (SGPW). In this study, we investigated the transformation of dissolved organic matter (DOM) during EAOPs of SGPW and the formation of toxic halogenated by-products at various current densities, using fluorescence spectroscopy and Fourier transform ion cyclotron resonance mass spectrometry. We found that the priority of DOM removal was terrestrial humic-like > microbial humic-like > protein-like substances. Non-Halogenated organic compounds (non-HOCs) and HOCs were predominantly CHO, and CHOCl/CHOBr compounds in EAOP-treated SGPW, respectively. As applied current density and treatment time increased, the production of oxyhalides increased, with chlorate > bromate > perchlorate. Meanwhile, most DOM was mineralized, resulting in residual products with higher modified aromaticity index (AImod) and nominal oxidation state of carbon (NOSC). The resistants had lower mass-to-charge ratio (m/z), AImod, NOSC, and double bond equivalent minus oxygen per carbon ((DBE−O)/C). The dominant reactions were the addition of tri-oxygen and deallyl. Bromine addition dominated the reactions of halogenating addition, while chlorine addition took second place. Furthermore, the acute toxicity of SGPW was positively correlated with inorganic halogenated by-products. This study contributes to the understanding and improvement of EAOPs for the treatment of SGPW.

One thousand soils for molecular understanding of belowground carbon cycling

While significant progress has been made in understanding global carbon (C) cycling, the mechanisms regulating belowground C fluxes and storage are still uncertain. New molecular technologies have the power to elucidate these processes, yet we have no widespread standardized implementation of molecular techniques. To address this gap, we introduce the Molecular Observation Network (MONet), a decadal vision from the Environmental Molecular Sciences Laboratory (EMSL), to develop a national network for understanding the molecular composition, physical structure, and hydraulic and biological properties of soil and water. These data are essential for advancing the next generation of multiscale Earth systems models. In this paper, we discuss the 1000 Soils Pilot for MONet, including a description of standardized sampling materials and protocols and a use case to highlight the utility of molecular-level and microstructural measurements for assessing the impacts of wildfire on soil. While the 1000 Soils Pilot generated a plethora of data, we focus on assessments of soil organic matter (SOM) chemistry via Fourier-transform ion cyclotron resonance-mass spectrometry and microstructural properties via X-ray computed tomography to highlight the effects of recent fire history in forested ecosystems on belowground C cycling. We observed decreases in soil respiration, microbial biomass, and potential enzyme activity in soils with high frequency burns. Additionally, the nominal oxidation state of carbon in SOM increased with burn frequency in surface soils. This results in a quantifiable shift in the molecular signature of SOM and shows that wildfire may result in oxidation of SOM and structural changes to soil pore networks that persist into deeper soils.

Degradation of phosphorus-containing natural organic matter facilitates enrichment of geogenic phosphorus in Quaternary aquifer systems: A molecular perspective

Although degradation of phosphorus-containing natural organic matter (NOM) is an important process associated with geogenic phosphorus (P) enrichment, the detailed mechanism underlying the association remains unclear. Herein, we used molecular characteristics of P-containing dissolved organic matter (DOM) coupled with hydrogeochemistry and carbon isotopes to unravel this controlling mechanism. Results indicate that P-containing DOM is indeed an important factor controlling groundwater P enrichment. Further, one-P-atom (1P) and two-P-atom (2P) compounds were widely detected. Compared to 1P compounds, 2P compounds have greater numbers of N/S-containing compounds; smaller proportions of highly unsaturated and aliphatic compounds; larger proportions of polyphenols and polycyclic aromatics; lower H/C and nominal oxidation state of carbon (NOSC) values; and higher m/z, O/C, P/C, N/C, double bond equivalents (DBE), and modified aromaticity index (AImod) values. At the molecular level, P-containing DOM degradation overall results in an increase in H/C and a decrease in O/C, and a processing gradient is observed from 2P to 1P compounds, during which dissolved inorganic phosphorus (DIP) was gradually accumulated and retained, eventually becoming the predominating P pool in groundwater. To our knowledge, this is the first study to reveal geogenic P enrichment from a molecular perspective in groundwater systems worldwide.

Paleo-Geomorphology Determines Spatial Variability of Geogenic Ammonium Concentration in Quaternary Aquifers.

Naturally occurring (i.e., geogenic) ammonium in groundwater has been widely detected globally, but the major controls on its regional distribution have been poorly characterized. Here, we identified the dominant role of paleo-geomorphology driven by paleo-climate in controlling the spatial variability of geogenic ammonium in groundwater using random forest algorithm and revealed the underlying mechanisms based on borehole sediment analysis of data obtained from the Dongting Lake Plain of the central Yangtze River basins in China. In the paleo-channel (PC) area, the aquifer depth-matched sediments were deposited during the last deglaciation when warm climate resulted in rapid filling into incised valleys, and terrestrial organic matter (OM) mainly as lignin experienced less degradation prior to sedimentation and had lower humification, higher N abundance, and nominal oxidation state of carbon (NOSC). In the paleo-interfluve (PI) area, the depth-matched sediments were deposited during the last glaciation, followed by intensive erosion in the surface during the last glacial maximum, and terrestrial OM mainly as lignin had been partly degraded into aliphatics prior to sedimentation and had higher humification, lower N abundance, and NOSC. As a result, under the present anaerobic conditions, less-humic and N-rich OM with more oxidized C tends to be more intensively mineralized into ammonium in the PC area than those in the PI area. These findings highlight the importance of paleo-geomorphology with paleo-climate in controlling the enrichment of geogenic ammonium in groundwater, which has a universal significance for understanding the genesis and distribution of high N loads in the aquatic environment worldwide.

Novel insight into arsenic enrichment in aquifer sediments under different paleotemperatures from a molecular-level characterization of sedimentary organic matter

The heterogeneous distribution of As in sediments is governed by the abundance and type of SOM, which is closely associated with the depositional environment. However, few studies have revealed the effect of depositional environment (e.g., paleotemperature) on As sequestration and transport in sediments from the perspective of the molecular characteristics of sedimentary organic matter (SOM). In this study, we characterized the optical and molecular characteristics of SOM coupled with organic geochemical signatures to illustrate in detail the mechanisms of sedimentary As burial under different paleotemperatures. We identified that alternating paleotemperature changes result in the fluctuation of H-rich and H-poor organic matter in sediments. Further, we found aliphatic and saturated compounds with higher nominal oxidation state of carbon (NOSC) values predominate under high-paleotemperature (HT) conditions, while polycyclic aromatics and polyphenols with lower NOSC values accumulate under low-paleotemperature (LT) conditions. Under LT conditions, thermodynamically favorable organic compounds (higher NOSC values) are preferentially degraded by microorganisms to provide sufficient energy to sustain sulfate reduction, favoring sedimentary As sequestration. Under HT conditions, the energy gained from the decomposition of low NOSC value organic compounds approaches the energy required to sustain dissimilatory Fe reduction, leading to sedimentary As release into groundwater. This study provides molecular-scale evidence of SOM that indicates LT depositional environments favor sedimentary As burial and accumulation.