The cotton aphid (Aphis gossypii), is one of the most devastating insect pests for chili pepper that damages the crop and transmits several viruses. Thus far, there is no commercial chili cultivar with effective resistance to cotton aphids (CA). The present study aimed to develop a reliable and practical screening protocol in chili peppers for aphids resistance in the tropical areas. Three no-choice test methods i.e., seedling cage, detached leaf, and clip cage tests have been developed. The experiment was conducted in a randomized complete block design (RCBD) with four replications in a greenhouse at the Gunung Putri, Bogor, West Java, Indonesia. Seven chili pepper genotypes belong to the species Capsicum annuum L. provided by the Department of Agronomy and Horticulture, IPB University, Bogor, Indonesia were used in this study. Chili pepper resistance to aphids was observed through the number of aphids progeny, and aphids fecundity among the genotypes. Two chili genotypes consistently showed low infestation while other genotypes showed the highest infestation with three screening methods. All the methods have a high heritability value (90%–91%), indicating that the evaluated chili genotypes could be used to determine effective screening methods. The correlation between the detached leaf and clip cage tests was significant (r = 0.84, P ≤ 0.05). Therefore, the clip cage test could be used as a reliable and practical screening test for the assay of chili peppers resistance to CA infestation. These information will be helpful in the development of aphid resistant cultivars in the future.