NMR Analysis Research Articles

Retentive bio-based chemical gel for removing glues from water-sensitive wooden artworks

Aged animal glues degrade and weaken over time, resulting in flakes and cracks on the material employed by wooden manufacturers and luthiers. Because of this deterioration, conservators and restorers remove aged water-soluble glues with a water swab, smoothing enough to clean them mechanically and putting on new reversible glues. However, it raises the question of whether a water swab can control moisture delivery while removing glue from wood, a hygroscopic and water-sensitive material.This study formulated a chemically crosslinked film-forming hydrogel based on sodium alginate (SA) with (3-Glycidoxypropyl)trimethoxysilane (GPTMS) and calcium chloride, named as CA-GPTMS to construct a retentive gel. Synthesized gel materials were characterized using several methods: liquid state NMR, FTIR-ATR, and SEM-EDS analyses were involved in examining the cross-linking process, while moisture and mechanical properties were examined to understand its suitability for the cleaning application process. The strategies for applying the CA-GPTMS gel on wood surface were to selectively soften the glue and to remove it as well as leave no residues on the wood surface. The cleaning process was investigated by using different techniques, i.e., stereomicroscopy, reflection-FTIR, and SEM-EDS. Compared to traditional rigid Agar gel, the CA-GPTMS gel appeared successfully resistant to destruction and was suitable for application on highly water-sensitive surfaces.

Conformational Analysis of 1,3-Difluorinated Alkanes.

Fluorine substitution can have a profound impact on molecular conformation. Here, we present a detailed conformational analysis of how the 1,3-difluoropropylene motif (-CHF-CH2-CHF-) determines the conformational profiles of 1,3-difluoropropane, anti- and syn-2,4-difluoropentane, and anti- and syn-3,5-difluoroheptane. It is shown that the 1,3-difluoropropylene motif strongly influences alkane chain conformation, with a significant dependence on the polarity of the medium. The conformational effect of 1,3-fluorination is magnified upon chain extension, which contrasts with vicinal difluorination. Experimental evidence was obtained from NMR analysis, where polynomial complexity scaling simulation algorithms were necessary to enable J-coupling extraction from the strong second-order spectra, particularly for the large 16-spin systems of the difluorinated heptanes. These results improve our understanding of the conformational control toolkit for aliphatic chains, yield simple rules for conformation population analysis, and demonstrate quantum mechanical time-domain NMR simulations for liquid state systems with large numbers of strongly coupled spins.

Two Novel Diterpenoid Alkaloids from Aconitum pendulum.

Two previously uncharacterized compounds, an aconitine-type C19-diterpenoid alkaloid (1) and a napelline-type diterpenoid alkaloid C20-diterpenoid alkaloid (2), as well as ten known compounds (3-12), were isolated from Aconitum pendulum. Their structures were elucidated based on spectroscopic data, including 1D and 2D NMR, IR, HR-ESI-MS, and single-crystal X-ray diffraction analysis. The anti-insecticidal activities of these compounds were evaluated by contact toxicity tests against two-spotted spider mites, and compounds 1, 2, and 9 showed moderate contact toxicity, with LC50 values of 0.86±0.09, 0.95±0.23, and 0.89±0.19 mg/mL, respectively. This study highlights the potential use of diterpenoid alkaloids as natural plant-derived pesticides for the management of plant pests.

Novel compounds isolated from health food products containing beni-koji (red yeast rice) with adverse event reports.

Recently, health hazards, such as kidney damage, have been reported owing to the ingestion of a health food product, so-called "foods with functional claims (FFC)'', containing beni-koji (red yeast rice). Although not an expected compound in the FFC, the detection of puberulic acid has also been reported. Further investigations of these health food products, such as the identification of other unintended compounds and clarifying the health impacts of puberulic acid, are required. To clarify the causes of these health issues, we investigated the presence of unintended compounds in the FFC containing beni-koji using comprehensive instrumental analyses. Using differential analysis, novel compounds 1 and 2 were detected as unexpected components between the samples with and without adverse event reports. Although limited to the samples available for analyses in this study, both compounds 1 and 2 were detected in all the samples that also contained puberulic acid. Compounds 1 and 2, with molecular formulas of C23H34O7 and C28H42O8, respectively, may be lovastatin derivatives. Their structures were confirmed using NMR analyses and are novel natural compounds. For definitive confirmation, we are in the process of synthesizing compounds 1 and 2 from lovastatin. The route of contamination of these compounds are currently under investigation. The findings of this study could be used to address the growing health hazards associated with health food products.

In Silico Design and in Vitro Assessment of Bicyclic Trifluoromethylated Pyrroles as New Antibacterial and Antifungal Agents.

QSAR studies on the number of compounds tested as S. aureus inhibitors were performed using an interactive Online Chemical Database and Modeling Environment (OCHEM) web platform. The predictive ability of the developed consensus QSAR model was q2 = 0.79 ± 0.02. The consensus prediction for the external evaluation set afforded high predictive power (q2 = 0.82 ± 0.03). The models were applied to screen a virtual chemical library with anti-S. aureus activity. Six promising new bicyclic trifluoromethylated pyrroles were identified, synthesized and evaluated in vitro against S. aureus, E. coli, and A. baumannii for their antibacterial activity and against C. albicans, C. krusei and C. glabrata for their antifungal activity. The synthesized compounds were characterized by 1H, 19F, and 13C NMR and elemental analysis. The antimicrobial activity assessment indicated that trifluoromethylated pyrroles 9 and 11 demonstrated the greatest antibacterial and antifungal effects against all the tested pathogens, especially against multidrug-resistant strains. The acute toxicity of the compounds to Daphnia magna ranged from 1.21 to 33.39 mg/L (moderately and slightly toxic). Based on the docking results, it can be suggested that the antibacterial and antifungal effects of the compounds can be explained by the inhibition of bacterial wall component synthesis.

Retrospective determination of exposure temperature of standing trees during wildfires with solid-state NMR

Timber plantations across the world are suffering from the effects of increasingly frequent wildfires, which potentially degrade the wood of affected trees, depending on the exposure temperature and time. However, it is rather complicated to determine the exact temperature of the fire, or the temperature to which the wood was exposed. This study aimed to determine the exposure temperature of wood retrospectively through solid-state NMR analysis. Models were developed from softwood and hardwood samples exposed to defined temperatures, which successfully linked the NMR signal to the exposure temperature. Various fit equations were developed to link the half-width or peak area of the NMR signal to the exposure temperatures. Hard- and softwoods displayed noticeable differences: a linear function best described the half-width in the higher temperature region for Pine and Eucalyptus, whereas a parabolic function for the peak area of Eucalyptus yielded the best correlation to the entire temperature range. This non-destructive and direct method offers a valuable evaluation method to determine, if wood in burnt trees is degraded and can be processed. An informed choice can be made on the decision to use, or discard burnt wood.

Quantum Mechanical Quantitative Nuclear Magnetic Resonance Enables Digital Reference Standards at All Magnetic Fields and Enhances qNMR Sustainability.

Quantum mechanics (QM)-driven 1H iterative functionalized spin analysis produces HifSA profiles, which encode the complete 1H spin parameters ("nuclear genotype") of analytes of interest. HifSA profiles enable the establishment of digital reference standards (dRS) that are portable, FAIR (findable - accessible - interoperable - reusable), and fit for the purpose of quantitative 1H NMR (qHNMR) analysis at any magnetic field. This approach enhances the sustainability of analytical standards. Moreover, the analyte-specific complete chemical shift and J-coupling information in HifSA-based dRS enable computational quantitation of substances in mixtures via QM-total-line-shape fitting (QM-qHNMR). We present the proof of concept for HifSA-based dRS by resolving the highly overlapping NMR resonances in the experimental spectra ("nuclear phenotypes") of the diastereomeric mixture of (2RS, 4RS)- and (2RS, 4SR)-difenoconazole (DFZ), a widely used antifouling food additive. The underlying 1H spin parameters are highly conserved in various solvents, are robust against variation in measurement temperature, and work across a wide range of magnetic fields. QM-qHNMR analysis of DFZ samples at 80, 400, 600, and 800 MHz showed high congruence with metrological reference values. Furthermore, this study introduces QM-qHNMR combined with chiral shift reagents for the analysis of all four DFZ stereoisomers: (2R, 4R)-, (2S, 4S)-, (2R, 4S)-, and (2S, 4R)-DFZ to perform chiral qHNMR measurements.

The Impact of Different Catalysts on Heterogeneous Hydrogenation of Hydroxyl‐Terminated Polybutadiene

AbstractHydroxyl‐terminated polybutadiene (HTPB) is hydrogenated using catalytic hydrogenation with HTPB as a precursor using various catalysts. The hydrogenation is carried out using iso‐propyl alcohol (IPA) and toluene as an active solvent media. The present paper used (a) charcoal, (b) palladium supported by charcoal (Pd−C), (c) palladium supported by zirconium oxide (Pd‐ZrO2), and (d) copper chromite (CC) as catalysts for hydrogenation of HTPB to study the influence on the degree of hydrogenation with respect to each catalyst. The experimental data shows that hydrogenated HTPB (HHTPB) formation is predominantly controlled by physisorption and chemical reaction with a catalyst. Various techniques like NMR, FTIR and chemical analysis are used to characterize HTPB and HHTPB. Degree of hydrogenation of HTPB is found to be higher with copper chromite when compared to other catalysts in this work. Post‐hydrogenation, no significant change in hydroxyl value and a marginal increase in molecular weight is noticed with all catalysts. HTPB and HHTPB samples are analyzed using FTIR, 1H‐NMR, and 13C‐NMR and TG‐DSC studies, and inferences are derived with respect to the change in the olefinic region, microstructural changes, molecular weight, and thermal decomposition characteristics.

(±)-R,S-2-Chloro-N-(4-methyl-2-oxo-2H-chromen-7-yl)-2-phenylacetamide

In this study, we report the synthesis of (±)-2-chloro-N-(4-methyl-2-oxo-2H-chromen-7-yl)-2-phenylacetamide through the reaction of 7-amino-4-methyl-2H-chromen-2-one with (±)-2-chloro-2-phenylacetyl chloride. The in vitro anti-inflammatory activity of the new compound was evaluated, and the results indicated that it exhibited superior activity compared to the standard, ibuprofen. The bio-functional hybrid compound underwent thorough detailed characterization utilizing 1H and 13C NMR, UV, and mass spectral analysis.

Copper catalyzed cycloaddition for the synthesis of non isomerisable 2′ and 3′-regioisomers of arg-tRNAarg

In this report, non-isomerisable analogs of arginine tRNA (Arg-triazole-tRNA) have been synthesized as tools to study tRNA-dependent aminoacyl-transferases. The synthesis involves the incorporation of 1,4 substituted-1,2,3 triazole ring to mimic the ester bond that connects the amino acid to the terminal adenosine in the natural substrate. The synthetic procedure includes (i) a coupling between 2′- or 3′-azido-adenosine derivatives and a cytidine phosphoramidite to access dinucleotide molecules, (ii) Cu-catalyzed cycloaddition reactions between 2′- or 3′-azido dinucleotide in the presence of an alkyne molecule mimicking the arginine, providing the corresponding Arg-triazole-dinucleotides, (iii) enzymatic phosphorylation of the 5′-end extremity of the Arg-triazole-dinucleotides with a polynucleotide kinase, and (iv) enzymatic ligation of the 5′-phosphorylated dinucleotides with a 23-nt RNA micro helix that mimics the acceptor arm of arg-tRNA or with a full tRNAarg. Characterization of nucleoside and nucleotide compounds involved MS spectrometry, 1H, 13C and 31P NMR analysis. This strategy allows to obtain the pair of the two stable regioisomers of arg-tRNA analogs (2′ and 3′) which are instrumental to explore the regiospecificity of arginyl transferases enzyme. In our study, a first binding assay of the arg-tRNA micro helix with the Arginyl-tRNA-protein transferase 1 (ATE1) was performed by gel shift assays.

Discovery of natural AMPK activator from the fruits of Xanthium sibiricum Patr.: Xanthiumine A, protoberberine alkaloid with unique C28 skeleton

Two protoberberine alkaloids with a unique C28 skeleton, named xanthiumines A (1) and B (2), respectively, were isolated from the fruits of Xanthium sibiricum Patr. Their structures including absolute configurations were unequivocally established by the comprehensive NMR and MS spectroscopic data analysis together with gauge-independent atomic orbital (GIAO) NMR calculations, and electronic circular dichroism (ECD) calculations. Compounds 1 and 2 are the first examples of natural protoberberine alkaloid with a phenolic acid group at C-13a. Their plausible biosynthetic pathway was proposed on the basis of the coexisting alkaloid monomer as the precursor. Furthermore, the effects and related molecular mechanism of compound 1 on hepatic lipid accumulation were also investigated in oleic acid (OA)-treated HepG2 cells.

Synthesis, Characterization, and Optimization of Novel Furan-ring Fused Chalcones via Radical Cyclization of α,β-Unsaturated Ketones and Cyclic Ketone

Abstract: Novel Furan-ring Fused Chalcones (FFC) were synthesized using a radical cyclization reaction of α,β-unsaturated ketones with cyclic ketone as the model reaction to attain this goal. In this study, traditional and microwave-assisted methods for the efficient and cost-effective synthesis of furan-ring fused chalcones in mild reaction conditions are compared and optimized. The goal is to develop a reliable and adaptable synthetic technique that may be used to produce these useful chalcone derivatives quickly and effectively. The optimal experimental conditions for these reactions were carefully determined using two independent methodologies: conventional (Method A) and microwave (Method B). The results indicated that the proposed method B could be used effectively in the future to synthesize novel furans with short reaction times and acceptable yields (87-94 %), and products were purified by column chromatography and preparative thin layer chromatography (PTLC). All new compounds were characterized by 1H-NMR, 13C-NMR, LC-MS, and elemental analyses.

Insights into the dissolution of cellulose in lithium bromide solution

Lithium bromide molten salt hydrate (∼62 wt% aqueous solution of LiBr) can dissolve cellulose, but the cellulose dissolution mechanisms are not fully understood. This study revisited cellulose dissolution in the LiBr solution and aimed to provide new insights into the dissolution mechanisms. The collected evidence suggested that cellulose dissolution in the LiBr solution is primarily attributed to the disruption of intermolecular H-bonds of cellulose by the ion-dipole coordination between hydrated Li+ and cellulose hydroxy. The coordination between Li+ and cellulose was verified by 7Li NMR and simultaneous DSC-TGA analysis. The observations in this study also suggest that polarizable, large-size, and low-electronegativity Br– plays a synergetic and supplementary role in the dissolution of cellulose. In addition, the dissolution of cellulose in the LiBr solution is greatly dependent on dissolution conditions (LiBr concentration, temperature, pH, and cellulose loading) and cellulose properties (particle size and degree of polymerization).

Characterization, antioxidant and α-amylase inhibition of polysaccharides and phosphorylated derivatives from finger citron (Citrus medica L. var. sarcodactylis Swingle)

In this study, the structure-activity relationship of finger citron polysaccharides (FCPs) and their phosphorylated derivatives (P-FCPs) was investigated. Three FCPs (FCP20, FCP40 and FCP60) were successively fractionated by ethanol, and were phosphorylated modification to obtain P-FCPs (P-FCP20, P-FCP40 and P-FCP60). FCPs and P-FCPs are acidic heteropolysaccharides composed of mannose, rhamnose, glucose, galactose, arabinose and galacturonic acid, and exhibited different content of neutral sugar, uronic acid, proteins, polyphenols and sulfates. FTIR and NMR analyses determined the structures of FCPs and P-FCPs, indicating that the phosphorylation modification was successful. P-FCPs possessed the smaller molecular weight distribution and particle size, with significant changes in microstructure than FCPs. Additionally, P-FCPs showed significantly increased antioxidant and α-amylase inhibitory activities compared to FCPs. The inhibitory mechanisms of FCP40 and P-FCP40 on α-amylase was a mixed-type manner and dynamic fluorescence quenching. The results demonstrate that phosphorylation modification can alter the structural features and bioactivities of FCPs, providing an approach for the further development of finger citron in the field of medicinal and functional foods.

Intramolecular hybrid diamine DMAPA/n-PeOH/H2O biphasic absorbent for CO2 absorption through combining zwitterion and base-catalyzed hydration mechanism

Biphasic solvents can decrease the regeneration energy of CO2 capture. As an intramolecular hybrid diamine, 3-Dimethylaminopropylamine (DMAPA) had a primary amino group and a tertiary amino group, which could absorb CO2 by combining zwitterion and base-catalyzed hydration mechanism. The derived DMAPA/n-PeOH/H2O biphasic absorbent possessed high CO2 absorption capacity (1.46 mol/mol) and large CO2-rich phase loading (6.27 mol/L), which were superior to existing mixed amine systems. At 393.15 K, this system had a large desorption amount of 4.91 mol/L and a fast desorption rate (6.68 E-3 mol/L·s), which were 2.84 and 3.73 times of 30 wt% MEA. The associated total regeneration energy was reduced to 1.36 GJ/t CO2, only 34.1 % of MEA absorbent. The reaction mechanism and origin of phase separation were revealed by NMR analysis and quantum chemistry calculations. In addition, low viscosity and corrosiveness were revealed and conducive for industrial application.

A biologically inspired fluorescent probe with enhanced sensing performance for detection of Al3+ based on metal replacement strategy

Salicylaldehyde acyl-hydrazone derivatives have been widely applied to design fluorescent probe for Al3+ detection, but they are always restricted to detect Al3+ in water and actual samples by their poor solubility, low sensitivity, and long response time. Biologically inspired, four salicylaldehyde acyl-hydrazone compounds were designed and synthesized and H4L1 as one of them was selected for in-situ assembly of the ytterbium complex (FP-Al), which has been developed to be a new fluorescent probe for Al3+ detection by the central mental displacement process. The in-situ structure transformation from FP-Al to Al-L was fully characterized by X-ray crystal structure analysis, 1H NMR, FT-IR, and spectral analysis. The intrinsic driving force was explained and elaborated by theoretical calculation. FP-Al showed a significant visible fluorescence enhancement and near-infrared luminescence decreased upon the addition of Al3+. Compared with the ligand H4L1, FP-Al showed enhanced sensing performance during Al3+ detection, especially in improving water solubility and selectivity to Al3+, promoting response speed, reducing background fluorescence and increase cell-membrane permeability. The application of spontaneous metal replacement reaction might be able to provide a new strategy to develop high-performance optical chemo-sensors.

Withanolides production by the endophytic fungus Penicillium oxalicum associated with Withania somnifera (L.) Dunal.

Withanolides are steroidal lactones with diverse bioactive potential and their production from plant sources varies with genotype, age, culture conditions, and geographical region. Endophytic fungi serve as an alternative source to produce withanolides, like their host plant, Withania somnifera (L.) Dunal. The present study aimed to isolate endophytic fungi capable of producing withanolides, characterization and investigation of biological activities of these molecules. The methanolic fungal crude extract of one of the fungal isolates WSE16 showed maximum withanolide production (219mg/L). The fungal isolate WSE16 was identified as Penicillium oxalicum based on its morphological and internal transcribed spacer (ITS) sequence analysis and submitted in NCBI (accession number OR888725). The methanolic crude extract of P. oxalicum was further purified by column chromatography, and collected fractions were assessed for the presence of withanolides. Fractions F3 and F4 showed a higher content of withanolides (51.8 and 59.1mg/L, respectively) than other fractions. Fractions F3 and F4 exhibited antibacterial activity against Staphylococcus aureus with an IC50 of 23.52 and 17.39µg/ml, respectively. These fractions also showed antioxidant activity (DPPH assay with IC50 of 39.42 and 38.71µg/ml, superoxide anion scavenging assay with IC50 of 41.10 and 38.84µg/ml, and reducing power assay with IC50 of 42.61 and 41.40µg/ml, respectively) and acetylcholinesterase inhibitory activity (IC50 of 30.34 and 22.05µg/ml, respectively). The withanolides present in fraction 3 and fraction 4 were identified as (20S, 22R)-1a-Acetoxy-27-hydroxywitha-5, 24-dienolide-3b-(O-b-D-glucopyranoside) and withanamide A, respectively, using UV, FTIR, HRMS, and NMR analysis. These results suggest that P. oxalicum, an endophytic fungus isolated from W. somnifera, is a potential source for producing bioactive withanolides.

A comprehensive investigation of (E)-2,4-Dimethyl-6-(((2-(Phenylthio)phenyl)imino)methyl)phenol (2PTALD): Synthesis, crystal structure, and computational insights with molecular dynamic simulations

The titled compound (E)-2,4-Dimethyl-6-(((2-(Phenylthio)phenyl)imino)methyl)phenol (2PTALD) was synthesized followed by crystallization and characterized with NMR, UV and FTIR analysis. The crystal structure of 2PTALD revealed molecular geometry and compared with theoretical results and found comparable. Based on further calculations on the optimized structure - vibrational spectra, electronic characteristics and NMR spectra compared with experimental findings which given a very consistent match. MEP, ELF and thermodynamic parameters are given idea of reactivity and stability. The HOMO & LUMO found energies signifying a significant charge transfer inside the molecule. The molecular docking of 2PTALD was done with three most suitable protein with high values of binding energies. Dynamic simulations were performed using an 8W4S protein target, and analysed interaction of ligand with protein in details. Hirshfeld surface analysis offered a comprehensive visualization of intermolecular associates in the crystal structure of 2PTALD. Overall, study presents a comprehensive investigation of Schiff base ligand 2PTALD, combining experimental and computational approaches to characterize its structure, properties, and potential applications.

Humic Acid-Functionalized Lignin-Based Coatings Regulate Nutrient Release and Promote Wheat Productivity and Grain Quality.

The rational application of fertilizers is crucial for achieving high crop yields and ensuring global food security. The use of biopolymers for slow-release fertilizers (SRFs) development has emerged as a game-changer and environmentally sustainable pathway to enhance crop yields by optimizing plant growth phases. Herein, with a renewed focus on circular bioeconomy, a novel functionalized lignin-based coating material (FLGe) was developed for the sustained release of nutrients. This innovative approach involved the extraction and sustainable functionalization of lignin through a solvent-free esterification reaction with humic acid─an organic compound widely recognized for its biostimulant properties in agriculture. The primary objective was to fortify the hydration barrier of lignin by reducing the number of its free hydroxyl groups, thereby enhancing release control, while simultaneously harnessing the agronomic benefits offered by humic acid. After confirming the synthesis of functionalized lignin (FLGe) through 13C NMR analysis, it was integrated at varying proportions into either a cellulosic or starch matrix. This resulted in the creation of five distinct formulations, which were then utilized as coatings for diammonium phosphate (DAP) fertilizer. Experimental findings revealed an improved morphology and hardness (almost 3-fold) of DAP fertilizer granules after coating along with a positive impact on the soil's water retention capacity (7%). Nutrient leaching in soil was monitored for 100 days and a substantial reduction of nutrients leaching up to 80% was successfully achieved using coated DAP fertilizer. Furthermore, to get a fuller picture of their efficiency, a pot trial was performed using two different soil textures and demonstrated that the application of FLGe-based SRFs significantly enhanced the physiological and agronomic parameters of wheat, including leaf evolution and root architecture, resulting in an almost 50% increase in grain yield and improved quality. The results proved the potential of lignin functionalization to advance agricultural sustainability and foster a robust bioeconomy aligning with the premise "from the soil to the soil".

Bio-Guided Isolation of Alpha-Glucosidase Inhibitory Compounds from Vietnamese Lichen Roccella Montagnei.

A bio-guided isolation was applied to the Vietnamese lichen Roccella montagnei based on alpha-glucosidase inhibition. Six compounds were isolated and structurally elucidated, including a new ortho depside, montagneside A (1), together with five known compounds, sekikaic acid (2), lanost-7-en-3β-ol (3), ethyl orsellinate (4), D-montagnetol (5), and D-erythrin (6). Their chemical structures were identified by extensive 1D and 2D NMR analysis, high-resolution mass spectroscopy, and comparisons with those reported in the literature. D-Erythrin (6), a major component, was selected for further modification using Smiles rearrangement. Three erythritol derivatives 6a-6c were synthesized. Compounds 1-3, 6, and 6a-6c were evaluated for alpha-glucosidase inhibition. Compounds 2 and 6a-6c showed significant alpha-glucosidase inhibition with IC50 values ranging from 7.9 to 149 μM, respectively. Molecular docking was applied to the most active compound 6a to clarify the inhibitory mechanism.