Nematode Research Articles

Utilizing recycled pumice and oyster shell waste for cost-effective treatment to mitigate pollutants and toxicity in swine wastewater

Despite the abundant nutrients that could be reutilized in swine wastewater, inadequate wastewater management leads to excessive metals and organic matter, causing environmental impacts on aquatic and terrestrial ecosystems. In this study, we recycled waste pumice and oyster shells for the cost-effective treatment and reclamation of swine wastewater. The toxicity of the treated wastewater was assessed using the soil nematode Caenorhabditis elegans and Chinese cabbage Brassica rapa chinensis. Our findings showed significant removal of suspended solids, biochemical oxygen demand, chemical oxygen demand, total phosphorus, and heavy metals (As, Cu, Ni, and Zn) from the swine wastewater after treatment with pumice and oyster shells. Moreover, untreated wastewater significantly inhibited the germination of Chinese cabbage, a trend that was reversed in treated wastewater. Both treated and untreated swine wastewater stimulated the growth of Chinese cabbage. Additionally, untreated swine wastewater exhibited high toxicity to the growth and reproduction of C. elegans after 72 hours of exposure, whereas treated wastewater showed notably reduced toxicity. The recycled pumice and oyster shells significantly induced growth and showed no toxicity in Chinese cabbage. These results suggest that pumice and oyster shell waste can effectively reduce environmental toxicity in raw swine wastewater, offering a cost-effective wastewater treatment solution for small-scale pig farms.

Soil nematode community structure reaction to organic amendments in shallot

ABSTRACT Nematode abundance and diversity could indicate soil health since they play roles in the soil nutrient cycle. In a shallot field, nematode abundance and diversity from different types of organic manure treatment were examined to determine the effect of organic fertilizer on nematode abundance. This study aimed to determine the best option of organic amendment for managing the nematode population in crop soil. The research took place in the center of a shallot plantation in Kulon Progo District, Yogyakarta, Indonesia, and consisted of four treatments: cow manure+green manure; sludge+green manure; cow manure, and chicken manure as farmer control. The nematode community was processed and analised with the PCA, which indicated a cumulative value of 94.5%. The treatment of cow and green manure contributed in nematode abundance, in which nematodes clustered were predators, bacterial feeders, and omnivores. The treatment of cow and green manure could be the best option that environmentally friendly control plant-parasitic nematodes and improve beneficial nematodes abundance that could improve the soil health by their regulation in soil.

Stable body sizes in soil nematodes across altitudes: The role of intrageneric variation in community assembly.

Animal body size exhibits rapid responses to environmental variations and displays considerable variability across ecological scales, significantly influencing ecological community assembly. However, our understanding of the extent of body size variation and its responses to environmental differences within soil fauna remains limited, impeding a comprehensive grasp of soil fauna's functional ecology. Here, we aim to investigate the magnitude of intrageneric body size variation and its implications for soil nematode community assembly along an altitudinal gradient. We examined soil nematode body size responses along an altitudinal gradient spanning from 3136 to 4128 m in an alpine mountain region of the eastern Tibetan Plateau. We assessed the contributions of intra- and intergeneric variations in body size, both within and among communities, using individual body size values. The implications of these variations for community assembly processes were determined through phenotypic variance ratios employing permutation tests. Our analyses did not reveal statistically significant correlations between altitude and the community-weighted mean body mass, regardless of considering intrageneric trait variation (IGTV). Approximately 15% of the variation in body size among communities and a substantial 72% of the variation in body size within communities can be attributed to IGTV. Altitude did not significantly affect IGTV within or among communities. Furthermore, our results underscored the dominant role of internal filtering within the community in governing nematode community assembly, with external filtering outside the community playing a limited role within our altitudinal range. Our findings emphasize the dominant role of body size variation within communities rather than among communities, attributable to strong internal filtering processes. These findings advance our understanding of body size variation in soil nematodes across ecological scales and highlight the pivotal role of intrageneric variation in shaping the functional ecology of soil fauna.

Evolution of neuropeptide Y/RFamide-like receptors in nematodes

The Neuropeptide Y/RFamide-like receptors belong to the Rhodopsin-like G protein-coupled receptors G protein-coupled receptors (GPCRs) and are involved in functions such as locomotion, feeding and reproduction. With 41 described receptors they form the best-studied group of neuropeptide GPCRs in Caenorhabditis elegans. In order to understand the expansion of the Neuropeptide Y/RFamide-like receptor family in nematodes, we started from the sequences of selected receptor paralogs in C. elegans as query and surveyed the corresponding orthologous sequences in another 159 representative nematode target genomes. To this end we employed a automated pipeline based on ExonMatchSolver, a tool that solves the paralog-to-contig assignment problem. Utilizing subclass-specific HMMs we were able to detect a total of 1557 Neuropeptide Y/RFamide-like receptor sequences (1100 NPRs, 375 FRPRs and 82 C09F12.3) in the 159 target nematode genomes investigated here. These sequences demonstrate a good conservation of the Neuropeptide Y/RFamide-like receptors across the Nematoda and highlight the diversification of the family in nematode evolution. No other genus shares all Neuropeptide Y/RFamide-like receptors with the genus Caenorhabditis. At the same time, we observe large numbers of clade specific duplications and losses of family members across the phylum Nematoda.

Warming enhanced the interaction effects of fungi and fungivores and soil potassium mineralization in tropical forest

Potassium (K) cycling in forest systems has received less attention than nitrogen (N) and phosphorus (P) cycles, despite its critical role in maintaining primary production and regulating water economy and use under climate warming. This study conducted a 10-year study in which we translocated dominant tropical forest tree seedlings and underlying soil (i.e., in situ soil) from high-altitude sites (600 m a.s.l.) to lower altitude sites at 300 m a.s.l. (+1.0 °C) and 30 m a.s.l. (+2.1 °C) to simulate climate warming in southern China. We investigated soil microbial and nematode communities, soil and foliar K concentrations at the aggregate level, and tree growth under different altitude sites. Microbial community was characterized by high-throughput sequencing, nematodes were identified to the genus level using microscope. The findings revealed that warming treatments significantly (p < 0.01) increased soil fungal gene abundance (+78 % at 300 m and +62 % at 30 m), fungal/bacterial abundance ratio (+121 % at 300 m and +101 % at 30 m), and soil fungivore abundance (+274 % at 300 m and +233 % at 30 m). These results indicate a shift in the soil decomposition pathway from bacterial to fungal-based channels. In addition, warming amplifies the interactions between fungi and fungivores. Aggregates had few effects on microbial biomass, but had significant effect on nematode abundance. Soil microcosm experiments consistently demonstrated that addition of the dominant fungivore Aphelenchoides significantly (p < 0.05) enhanced soil-exchangeable K by stimulating fungal gene abundance and activity. Furthermore, warming-induced changes in forest communities were observed. At the species-specific tree level, Syzygium rehderianum demonstrated the ability to take advantage of this scenario, exhibiting increased K uptake (−4% at 300 m and +32 % at 30 m). This may be attributed to the species being ectomycorrhizal-forming, where colonizing root surfaces can mobilize interlayer and structural K from the minerals. In contrast, Machilus breviflora exhibited lower foliar K concentrations (−42 % at 300 m and −41 % at 30 m) and reduced growth. However, warming had little effect on Schima superba, Myrsine seguinii, Itea chinensis, and Ardisia lindleyana growth. Warming-induced changes in the plant–soil system K cycle highlight the emergence of a new ecosystem structure with different soil web structures and distinct plant community species composition. Our results prompt further research to understand the microbiome-mediated complexities of understudied nutrient cycles, which are likely to be further altered in the future owing to climate change.

OxyR is required for oxidative stress resistance of the entomopathogenic bacterium Xenorhabdus nematophila and has a minor role during the bacterial interaction with its hosts.

Xenorhabdus nematophila is a Gram-negative bacterium, mutualistically associated with the soil nematode Steinernema carpocapsae, and this nemato-bacterial complex is parasitic for a broad spectrum of insects. The transcriptional regulator OxyR is widely conserved in bacteria and activates the transcription of a set of genes that influence cellular defence against oxidative stress. It is also involved in the virulence of several bacterial pathogens. The aim of this study was to identify the X. nematophila OxyR regulon and investigate its role in the bacterial life cycle. An oxyR mutant was constructed in X. nematophila and phenotypically characterized in vitro and in vivo after reassociation with its nematode partner. OxyR plays a major role during the X. nematophila resistance to oxidative stress in vitro. Transcriptome analysis allowed the identification of 59 genes differentially regulated in the oxyR mutant compared to the parental strain. In vivo, the oxyR mutant was able to reassociate with the nematode as efficiently as the control strain. These nemato-bacterial complexes harbouring the oxyR mutant symbiont were able to rapidly kill the insect larvae in less than 48 h after infestation, suggesting that factors other than OxyR could also allow X. nematophila to cope with oxidative stress encountered during this phase of infection in insect. The significantly increased number of offspring of the nemato-bacterial complex when reassociated with the X. nematophila oxyR mutant compared to the control strain revealed a potential role of OxyR during this symbiotic stage of the bacterial life cycle.

Genes divided according to the relative position of the longest intron show increased representation in different KEGG pathways

Despite the fact that introns mean an energy and time burden for eukaryotic cells, they play an irreplaceable role in the diversification and regulation of protein production. As a common feature of eukaryotic genomes, it has been reported that in protein-coding genes, the longest intron is usually one of the first introns. The goal of our work was to find a possible difference in the biological function of genes that fulfill this common feature compared to genes that do not. Data on the lengths of all introns in genes were extracted from the genomes of six vertebrates (human, mouse, koala, chicken, zebrafish and fugu) and two other model organisms (nematode worm and arabidopsis). We showed that more than 40% of protein-coding genes have the relative position of the longest intron located in the second or third tertile of all introns. Genes divided according to the relative position of the longest intron were found to be significantly increased in different KEGG pathways. Genes with the longest intron in the first tertile predominate in a range of pathways for amino acid and lipid metabolism, various signaling, cell junctions or ABC transporters. Genes with the longest intron in the second or third tertile show increased representation in pathways associated with the formation and function of the spliceosome and ribosomes. In the two groups of genes defined in this way, we further demonstrated the difference in the length of the longest introns and the distribution of their absolute positions. We also pointed out other characteristics, namely the positive correlation between the length of the longest intron and the sum of the lengths of all other introns in the gene and the preservation of the exact same absolute and relative position of the longest intron between orthologous genes.

Inference of Essential Genes of the Parasite Haemonchus contortus via Machine Learning.

Over the years, comprehensive explorations of the model organisms Caenorhabditis elegans (elegant worm) and Drosophila melanogaster (vinegar fly) have contributed substantially to our understanding of complex biological processes and pathways in multicellular organisms generally. Extensive functional genomic-phenomic, genomic, transcriptomic, and proteomic data sets have enabled the discovery and characterisation of genes that are crucial for life, called 'essential genes'. Recently, we investigated the feasibility of inferring essential genes from such data sets using advanced bioinformatics and showed that a machine learning (ML)-based workflow could be used to extract or engineer features from DNA, RNA, protein, and/or cellular data/information to underpin the reliable prediction of essential genes both within and between C. elegans and D. melanogaster. As these are two distantly related species within the Ecdysozoa, we proposed that this ML approach would be particularly well suited for species that are within the same phylum or evolutionary clade. In the present study, we cross-predicted essential genes within the phylum Nematoda (evolutionary clade V)-between C. elegans and the pathogenic parasitic nematode H. contortus-and then ranked and prioritised H. contortus proteins encoded by these genes as intervention (e.g., drug) target candidates. Using strong, validated predictors, we inferred essential genes of H. contortus that are involved predominantly in crucial biological processes/pathways including ribosome biogenesis, translation, RNA binding/processing, and signalling and which are highly transcribed in the germline, somatic gonad precursors, sex myoblasts, vulva cell precursors, various nerve cells, glia, or hypodermis. The findings indicate that this in silico workflow provides a promising avenue to identify and prioritise panels/groups of drug target candidates in parasitic nematodes for experimental validation in vitro and/or in vivo.

Biofumigation Treatment Using Tagetes patula, Sinapis alba and Raphanus sativus Changes the Biological Properties of Replanted Soil in a Fruit Tree Nursery

Apple replant disease (ARD) may cause significant losses both in commercial orchards and in fruit tree nurseries. The negative effects of ARD may be limited by using biofumigation. The aim of the study was to assess the influence of this treatment on the biological properties of replanted soil in a tree nursery. In two-year experiment, apple trees of the ‘Golden Delicious’ cultivar were used. The trees were planted into soil from two sites. The soil from one site had not been used in a nursery before (crop rotation soil). The other soil had been used for the production of apple trees (replanted soil). Three species of plants were used in the replanted soil as a forecrop: French marigold (Tagetes patula), white mustard (Sinapis alba), and oilseed radish (Raphanus sativus var. oleifera). The following parameters were assessed in the experiment: the enzyme and respiratory activity of the soil, the total count of bacteria, fungi, oomycetes and actinobacteria in the soil, as well as the count and species composition of soil nematodes. The vegetative growth parameters of the apple trees were also assessed. The biological properties of the replanted soil were worse than those of the crop rotation soil. In the replanted soil, the organic matter content, enzyme and respiratory activity as well as the count of soil microorganisms were lower. The biofumigants, used as a forecrop on the replanted soil, significantly increased its enzyme activity and respiratory activity. Dehydrogenase activity increased more than twofold. Growth parameters of the trees were significantly improved. The height of the trees increased by more than 50%, and the leaf area, weight and total length of side shoots were higher as well. The density of nematodes in the replanted soil after biofumigation was significantly reduced, with a larger reduction in the marigold fumigated soil. Eight of the eleven nematode species were completely reduced in the first year after biofumigation treatment.

Soil properties override climatic factors to shape soil nematode diversity in the eastern forest transect of China

Soil nematodes are among the most significant soil-dwelling organisms in forest ecosystems. However, the factors that shape the distribution of soil nematodes are still not well explored. Therefore, we collected soil samples from 20 forest sites along the eastern transect of China and sequenced 18S rRNA V9 region to reveal the biodiversity of soil nematodes. Our study found that soil nematode richness is higher in temperate mixed needleleaf and broadleaf forests compared with the other four vegetation regions. Soil physiochemical properties overrode climatic factors to be the primary drivers of soil nematode richness and community composition. Importantly, the soil nematode richness significantly enhanced ecosystem multifunctionality, especially bacterial biomass and enzyme activities, with a determination coefficient (r2) of 0.23, suggesting that soil nematodes played essential roles in the forest ecosystem.

Land use and temperature shape the beta diversity of soil nematodes across the Mollisol zone in northeast China

Understanding soil biodiversity response to land use change is crucial for predicting and preserving soil ecological functions and health under anthropogenic influence. Yet, the overall effect of land use changes and climate conditions on belowground biodiversity remains insufficiently explored at large scales. Here, we studied the effect of conversion from natural soils to agricultural soils on soil nematode diversity and community assembly across the Mollisol zone in northeast China. We found that nematode alpha diversity decreased in agricultural soils, and nematode alpha diversity did not exhibit a regular change with latitudinal variation. For beta diversity, we found that nematode community structures were significantly affected by land use change. Furthermore, climatic factors and geographic distance significantly impacted the beta diversity of soil nematodes, but not the alpha diversity. Mean annual temperature was a primary climatic determinant of soil nematode communities, while the effect of mean annual precipitation on soil nematode beta diversity was only observed in agricultural soils. Stochastic processes dominated soil nematode community assembly, but agricultural soils increased the importance of deterministic processes compared to natural soils. There is no any expected variation in soil nematode alpha diversity along the Mollisol zone. Our findings highlight the crucial role of temperature in driving soil nematode communities.

PLANT PARASITIC NEMATODE (PPNS) INVESTIGATION IN SELECTED SITE OF LOWER HILLS OF UTTARAKHAND, INDIA

These findings can be valuable tools for long-term monitoring and for comprehending regional soil. Nematodes are essential components of soil the soil community capable of surviving extreme and diverse climatic conditions. The diversity and distribution of soil nematodes were studied from the agricultural crop from the selected localities of Pauri Garhwal (1,814 mASL, 29.18ºC to 14.26ºC), A total of 110 soil samples were collected attitudinally from subarea of Pauri Gharwal. The present study revealed that the nematode diversity consist of 54 genera. The nematode diversity structure also demonstrated sensitivity to various other climatic parameters. Elevation significantly influenced biodiversity indices, diversity composition, and trophic levels. Nematode genera richness and all regular indexes indicated lower biodiversity of soil nematodes at higher altitudes. These findings can be valuable tools for long-term monitoring and for comprehending regional soil health in the face of changing environmental conditions.

Fumigation Using 1,3-Dichloropropene Manages Meloidogyne enterolobii in Sweetpotato More Effectively than Fluorinated Nematicides.

Meloidogyne enterolobii is an emerging global threat and is damaging to sweetpotato (Ipomoea batatas) production in the southeast United States. Nematicide application is one of the few management strategies currently available against this nematode, and field testing is urgently needed. The objective of this study was to assess common nematicides for management of M. enterolobii and nontarget effects on free-living nematodes in sweetpotato field production. Treatments were (i) untreated control, (ii) fumigation using 1,3-dichloropropene, or at-transplant drench of fluorinated nematicides (iii) fluazaindolizine, (iv) fluopyram, or (v, vi) fluensulfone at 2 or 4 kg a.i./ha. In 2022, a field trial was conducted under severe M. enterolobii pressure and was repeated in 2023 in the same location without treatment rerandomization. Fumigation using 1,3-dichloropropene (1,3-D) was the only consistently effective nematicide at improving marketable yield relative to control and also consistently reduced most storage root galling measurements and midseason Meloidogyne soil abundances. Fluensulfone at 4 kg a.i./ha consistently improved total yield but not marketable yield, whereas fluensulfone at 2 kg a.i./ha, fluazaindolizine, and fluopyram did not improve yield. Each fluorinated nematicide treatment reduced at least one nematode symptom or nematode soil abundances relative to control, but none provided consistent benefits across years. Even with 1,3-D fumigation, yield was poor, and none of the nematicide treatments provided a significant return on investment relative to forgoing nematicide application. There were minimal effects on free-living nematodes. In summary, 1,3-D is an effective nematicide for M. enterolobii management, but additional management will be needed under severe M. enterolobii pressure.

Nitrogen addition and precipitation reduction alter ecosystem multifunctionality and decrease soil nematode abundance and trophic energy fluxes in a temperate forest

Soil biota and energy flow within their food webs have a profound impact on various ecosystem functions. However, there are still significant gaps in our understanding of how climate change factors, such as nitrogen deposition and reduced precipitation, impact ecosystem functioning, particularly in temperate forest ecosystems. In this study, we evaluated the response of ecosystems to long-term nitrogen deposition and/or reduced precipitation due to climate change. We assessed these responses by examining nematode community energy fluxes and their associated ecosystem multifunctionality. Field experiments were conducted in a temperate forest to simulate nitrogen deposition (5.0 kg N·ha−1·yr−1) using NH4NO3 application and to reduce precipitation (to 70 % of a normal year) using rain shelters. Our findings showed that nitrogen addition and/or precipitation reduction treatments altered soil nematode composition. Nitrogen addition alone reduced the abundance and energy fluxes of high trophic groups such as omnivore-predators, which served as proxies for total abundance and energy fluxes. In contrast, precipitation reduction did not exhibit significant effects on overall abundance and energy fluxes. Environmental factors influencing changes in soil nematode abundance and energy fluxes included soil pH, NH4+-N, and total nitrogen in the soil. Nitrogen addition increased ecosystem multifunctionality by promoting nutrient cycling, while precipitation reduction promoted plant productivity and inhibited carbon cycling, without changing ecosystem multifunctionality. Regression analysis showed that soil nematode energy fluxes were negatively correlated with ecosystem multifunctionality. The effects of these two factors on soil nematode food webs showed temporal variation, as well as indicators related to multiple functions of the ecosystem. Our study suggests that soil nematode energy fluxes are more sensitive than nematode abundance for quantifying the relationship between biodiversity and ecosystem multifunctionality.

Urea regulates soil nematode population by enhancing the nematode-trapping ability of nematode-trapping fungi

As the most abundant animal in the soil, nematodes are directly or indirectly involved in almost all soil ecological processes. Studying soil nematode population regulation is essential to understanding soil ecological processes. This study found urea combines nematode-trapping fungi to regulate the population of soil nematodes. In soil, compared with no urea, adding 0.2 mg/mL urea after applying Arthrobotrys oligospora and Dactylellina ellipsospora reduced the number of nematodes by 34.7% and 31.7%. Further, the mechanism of urea couple nematode-trapping fungi to regulate the nematode population was explored in the medium environment. The results showed that the addition of 0.2 mg/ml urea accelerated the trap formation of A. oligospora and D. ellipsosporas by 50% and 46.5%, and increased the yield of traps of A. oligospora and D. ellipsosporas by 39.5% and 40.6%, thus, the predatory efficiency of A. oligospora and D. ellipsospora on nematodes was increased by 34.2% and 32.7%. In conclusion, urea regulates the predation ability of A. oligospora and D. ellipsosporas to regulate the soil nematode population. This study deepens the understanding of the regulatory pathways of the soil nematodes but also provides a potential new strategy for harmful nematode bio-control.

Contrasting patterns and drivers of soil nematode community in regions with different urbanization levels

Rapid urbanization profoundly affects global biodiversity. To date, numerous studies have been conducted on how urbanization affects aboveground flora and fauna. However, the effects of urbanization on the diversity and composition of belowground biota, such as nematodes, remain unknown. To address this knowledge gap, high-throughput sequencing was used to investigate the impact of different urbanization levels (urban regions, suburban regions, and ecoregions) on soil nematode communities in Baoding City, China. Our results revealed that the soil nematode communities in urban regions exhibited a lower alpha diversity (richness) and a higher beta diversity than those in ecoregions. This is potentially due to the loss of native specialist species in urban regions and higher environmental heterogeneity of urban regions compared with other regions. Random forest and network analysis revealed that heavy metals, soil properties, and a few representative nematode taxa mainly contributed to the variations of nematode community diversity among regions with different urbanization levels. The main drivers of variations include lead content and the Tylenchida order in urban regions, cadmium and the Rhabditida order in suburban regions, and total organic carbon and numerous taxa in ecoregions. It is not difficult to find that soil heavy metal pollution originating from human activity plays an important role in the variations of soil nematode communities. Structural equation models revealed that the diversity of the soil nematode community was altered by urbanization directly or indirectly via either bacterial diversity or nematode abundance, and the pathways were contrasting for different regions. Overall, our results indicated that urbanization reduced soil nematode diversity and changed the composition of soil nematode communities, likely leading to biodiversity loss, and the establishment of ecological preservation areas maybe help improve the situation.

Mycorrhizal‐herbivore interactions and the competitive release of subdominant tallgrass prairie species

Abstract Plant‐microbial‐herbivore interactions play a crucial role in the structuring and maintenance of plant communities and biodiversity, yet these relationships are complex. In grassland ecosystems, herbivores have the potential to greatly influence the survival, growth and reproduction of plants. However, few studies examine interactions of above‐ and below‐ground grazing and arbuscular mycorrhizal (AM) mycorrhizal symbiosis on plant community structure. We established experimental mesocosms containing an assemblage of eight tallgrass prairie grass and forb species in native prairie soil, maintained under mycorrhizal and nonmycorrhizal conditions, with and without native herbivorous soil nematodes, and with and without grasshopper herbivory. Using factorial analysis of variance and principal component analysis, we examined: (a) the independent and interacting effects of above‐ and below‐ground herbivores on AM symbiosis in tallgrass prairie mesocosms, (b) independent and interacting effects of above‐ and below‐ground herbivores and mycorrhizal fungi on plant community structure and (c) potential influences of mycorrhizal responsiveness of host plants on herbivory tolerance and concomitant shifts in plant community composition. Treatment effects were characterized by interactions between AM fungi and both above‐ground and below‐ground herbivores, while herbivore effects were additive. The dominance of mycorrhizal‐dependent C4 grasses in the presence of AM symbiosis was increased (p &lt; 0.0001) by grasshopper herbivory but reduced (p &lt; 0.0001) by nematode herbivory. Cool‐season C3 grasses exhibited a competitive release in the absence of AM symbiosis but this effect was largely reversed in the presence of grasshopper herbivory. Forbs showed species‐specific responses to both AM fungal inoculation and the addition of herbivores. Biomass of the grazing‐avoidant, facultatively mycotrophic forb Brickellia eupatorioides increased (p &lt; 0.0001) in the absence of AM symbiosis and with grasshopper herbivory, while AM‐related increases in the above‐ground biomass of mycorrhizal‐dependent forbs Rudbeckia hirta and Salvia azurea were eradicated (p &lt; 0.0001) by grasshopper herbivory. In contrast, nematode herbivory enhanced (p = 0.001) the contribution of Salvia azurea to total biomass. Synthesis. Our research indicates that arbuscular mycorrhizal symbiosis is the key driver of dominance of C4 grasses in the tallgrass prairie, with foliar and root herbivory being two mechanisms for maintenance of plant diversity.

Discovery and Characterization of Four Aphelenchid Species from Cultivated Regions of Southern Alberta, Canada.

The nematode family Aphelenchoididiae is considered fungal-feeding, predatory, or root hair feeders. Some members of this family are universally present in agricultural landscapes and are an integral part of soil health and conservation studies. In the present soil nematode biodiversity survey, we detected four species of the genera Aphelenchus, Aphelenchoides, and Robustodorus. Because fungal-feeding nematodes from southern Alberta have not previously been reported, we conducted a detailed morphological and molecular investigation, identifying these species as Aphelenchus avenae, Aphelenchoides limberi, Aphelenchoides prairiensis n. sp. and Robustodorus paramegadorus n. sp. The first two species we document as new records from southern Alberta, whereas A. prairiensis n. sp. and R. paramegadorus n. sp. we describe in detail as new taxa. Briefly, A. prairiensis n. sp. is an amphimictic species having 4 lateral lines; hemispherical anteriorly flattened lip region; delicate stylet and swelling-like stylet knobs; excretory pore at the posterior edge of nerve ring. Female tail conical, gradually tapering towards a truncated end with single mucro. Spicule 23.0 (20.0-25.0) µm long having elongated rounded condylus, small, blunt conical rostrum, and lamina that gradually tapers towards the rounded distal end; three pairs of caudal papillae were present on the male tail. Robustodorus paramegadorus n. sp., is a parthenogenetic species with 3 lines in the lateral fields; lip region rounded, anteriorly flattened; stylet robust, with knobs rounded to bean-shaped; excretory pore located posterior to nerve ring; reproductive components were quite indiscernible with a short 24.0 (18.0-27.0) µm post-vulval uterine sac; tail conical, ending with pointed to wedge-shaped tip. We performed molecular characterizations for each species and constructed phylogenetic trees to study the phylogenetic relationship of these aphelenchid species. The discovery of A. prairiensis n. sp. and R. paramegadorus n. sp. indicates that soil nematode diversity is relatively unexplored in southern Alberta. The findings of this study will significantly enhance the identification processes and may contribute towards future soil health and biodiversity efforts.

Geometric phase predicts locomotion performance in undulating living systems across scales

Self-propelling organisms locomote via generation of patterns of self-deformation. Despite the diversity of body plans, internal actuation schemes and environments in limbless vertebrates and invertebrates, such organisms often use similar traveling waves of axial body bending for movement. Delineating how self-deformation parameters lead to locomotor performance (e.g. speed, energy, turning capabilities) remains challenging. We show that a geometric framework, replacing laborious calculation with a diagrammatic scheme, is well-suited to discovery and comparison of effective patterns of wave dynamics in diverse living systems. We focus on a regime of undulatory locomotion, that of highly damped environments, which is applicable not only to small organisms in viscous fluids, but also larger animals in frictional fluids (sand) and on frictional ground. We find that the traveling wave dynamics used by mm-scale nematode worms and cm-scale desert dwelling snakes and lizards can be described by time series of weights associated with two principal modes. The approximately circular closed path trajectories of mode weights in a self-deformation space enclose near-maximal surface integral (geometric phase) for organisms spanning two decades in body length. We hypothesize that such trajectories are targets of control (which we refer to as "serpenoid templates"). Further, the geometric approach reveals how seemingly complex behaviors such as turning in worms and sidewinding snakes can be described as modulations of templates. Thus, the use of differential geometry in the locomotion of living systems generates a common description of locomotion across taxa and provides hypotheses for neuromechanical control schemes at lower levels of organization.

Impact of Abiotic and Biotic Environmental Conditions on the Development and Infectivity of Entomopathogenic Nematodes in Agricultural Soils.

Many organisms, including beneficial entomopathogenic nematodes (EPNs), are commonly found in the soil environment. EPNs are used as biopesticides for pest control. They have many positive characteristics and are able to survive at sites of application for a long time, producing new generations of individuals. The occurrence of populations depends on many environmental parameters, such as temperature, moisture, soil texture, and pH. Extreme temperatures result in a decrease in the survival rate and infectivity of EPNs. Both high humidity and acidic soil pH reduce populations and disrupt the biological activity of EPNs. Nematodes are also exposed to anthropogenic agents, such as heavy metals, oil, gasoline, and even essential oils. These limit their ability to move in the soil, thereby reducing their chances of successfully finding a host. Commonly used fertilizers and chemical pesticides are also a challenge. They reduce the pathogenicity of EPNs and negatively affect their reproduction, which reduces the population size. Biotic factors also influence nematode biology. Fungi and competition limit the reproduction and survival of EPNs in the soil. Host availability enables survival and affects infectivity. Knowledge of the influence of environmental factors on the biology of EPNs will allow more effective use of the insecticidal capacity of these organisms.