Parkinson's disease (PD) is a central nervous system neurodegenerative illness. Its symptoms include poor motor skills, speech, cognition, and memory. The condition is incurable, although evidence shows that early identification and therapy reduce symptoms. A lack of medical facilities and personnel hinders PD identification. PD is a common chronic degenerative neurological dyskinesia that threatens the elderly. Multi-modal data fusion may reveal more about PD pathophysiology. This study aims to contribute to the evaluation of PD by introducing a novel multimodal deep-learning technique for distinguishing individuals with PD from those without PD. This study utilizes resting functional magnetic resonance imaging (rfMRI) and gene data obtained from the Parkinson's Progression Markers Initiative (PPMI) and Alzheimer's Disease Neuroimaging Initiative (ADNI) databases. The primary objective is to predict the specific pathological brain regions and identify the risk genes associated with PD. The authors want to learn more about the genetic components and underlying procedures by analyzing these datasets. Contributing to the development and progression of PD. In this study, we present our findings that demonstrate the superior recital of our proposed multimodal method compared to both unimodal approaches and other existing multimodal methods. Our evaluation is based on an extensive dataset consisting of real patients. Specifically, our proposed method stacked deep learning classifiers (SDLC) achieves an impressive F1-score of 0.99 and an accuracy of 99.4%, surpassing the performance of both unimodal approaches and other multimodal methods. These results highlight the efficiency and potential of our method in enhancing the accuracy and reliability of patient data analysis. In this study, we demonstrate that our proposed method consistently surpasses alternative approaches in terms of performance, as indicated by a higher average increase in F1-score. This finding highlights the advantage of training on multiple modalities, even when a particular modality is absent during inference.