The rotation precision of rotors determines the efficiency and quality of the overall aero-engine, as well as its long-term and reliable operation ability. As the terminal link of aero-engine manufacturing, the assembly is the last guarantee of precision control. Rotor assembly relates to the accurate expression of the connection form and design optimization of the assembly scheme. The existing variation model cannot adequately handle the partial parallel chain problem, ignoring the bayonet circular connector between the rotor parts, and it is still deficient in multistage gyration error control. In this paper, the partial parallel connection and multistage revolving characteristics of rotors were discussed, and a novel modeling and optimizing method for a partial parallel dimension chain was proposed. On the one hand, the variation expression of the connection features for the revolving components considering the partial parallel structure was researched. Contact point-based torsors were represented, and a system for locating points was regarded as an assembly to describe the partial parallel chain. On the other hand, the variation propagation modeling and control for the stacking of the multistage revolving components was researched. A revolution joint was introduced in the unified Jacobian–Torsor model, and a novel assembly technique for concentricity control was proposed. Therefore, a unified variation analysis and control method for rotor assembly has been developed. Experimental results show that through this method, the final concentricity variation is 0.0539 mm, far less than the 0.1595 mm of the traditional model, and is closer to the true value range of 0.030–0.040 mm. Moreover, the optimum installed angles can be calculated as 3.153 rad, 6.025 rad, and 2.590 rad, to obtain the highest concentricity of 0.040 mm, which has strong practical guiding significance.