A sampling program was initiated in 1986 in the Skidaway River estuary, a tidally dominated subtropical estuary in the southeastern USA. Hydrography, nutrients, particulate organic matter (POM), and microbial and plankton abundance and composition were measured at weekly intervals at high and low tide on the same day at a single site. Hydrographic and nutrient data during 1986–1996 were given in Verity (2002); particulate organic carbon (POC), nitrogen (PON) and chlorophylla (chla) are presented here; plankton data will be presented elsewhere. Chla was fractionated into 8 μm size classes. All classes of POM exhibited distinct seasonal patterns superimposed upon significant long-term increases during the study period. Total chla, 8 μm chla increased 36%, 61%, and 18%, respectively, however the fraction of total biomass attributable to small phytoplankton (<8 μm) increased 25%. The annual amplitude between minimum and maximum stock sizes increased significantly, meaning that bloom events became larger. POC and PON also increased 16% over the decade and, as observed with patterns in chla, exhibited increases in annual amplitude. The C:N ratio was typically 6.4–6.6 (wt:wt) and did not change significantly, while the annual mean C:Chla ratio decreased 19% from 165 to 140. These characteristics indicated highly labile POM composed of significant amounts of detritus, but which became increasingly autotrophic with time. Averaged over the decade, temperature explained 45–50% of the variance in POM. Nutrients were even better predictors of POM, as 60–75% of the variance in chla, POC, and PON were explained by ambient concentrations of DIN, or PO4. Combined with significant increases in NO3, NH4, PO4, Si(OH)4, and DON during 1986–1996, these data strongly suggest that anthropogenic activities contributed to increased loading of dissolved nutrients, which became incorporated into living and nonliving particulate organic matter.