A novel numerical method, energy element method (EEM), is proposed for the three-dimensional (3D) buckling analysis of stiffened plates with complex geometries. The problem is formulated in a cuboidal domain, and any complex geometric stiffened plate is modeled by assigning cutouts within the cuboidal domain. The stiffened plate is considered as an energy body and is discretized using Gauss points with variable stiffness properties to simulate its energy distribution. Incorporating the extended interval integration, Gauss quadrature, variable stiffness properties, and Chebyshev polynomials, the strain energy of stiffened plates with complex geometries can be numerically simulated by putting the stiffness and thickness of Gauss points in the cutouts to zero in the cuboidal domain. Using the principle of minimum potential energy and Ritz solution procedure, the deformation and buckling behaviors of stiffened plates with complex geometries can be captured. As a result of the new formulations in EEM, new standard energy functionals and solving procedures have been developed. In addition, Gauss points are generated within the energy elements accounting for the geometric boundaries of the stiffened plate, which are characterized by level set functions. EEM is employed to investigate complex-shaped stiffened plates with straight or curvilinear stiffeners, and the results are compared to those obtained using FEM or mesh-free method. The precision, generalization, and stability of EEM are demonstrated.