Fecal Microorganisms Research Articles

Evaluating Slurry Broadcasting and Injection to Ley for Phosphorus Losses and Fecal Microorganisms in Surface Runoff

The recent growth in the size of dairy cattle farms and the concentration of farms into smaller areas in Finland may increase local water pollution due to increased manure production and slurry application to grass. Therefore, a field study was conducted to monitor losses of total phosphorus (TP), dissolved reactive phosphorus (DRP), and fecal microorganisms in surface runoff from a perennial ley. Cattle slurry was added once a year in June 1996-1997 (Study I) and biannually in June and October 1998-2000 (Study II). The slurry was surface broadcast or injected into the clay soil. The field had a slope of 0.9 to 1.7%. Mineral fertilizer was applied on control plots. Biannual slurry broadcasting increased DRP (p < 0.001) and TP losses (p < 0.001) and numbers of fecal microorganisms in surface runoff waters. The highest losses of TP (2.7 kg ha(-1) yr(-1)) and DRP (2.2 kg ha(-1) yr(-1)) and the highest numbers of fecal coliforms (880 colony-forming units [CFU] per 100 mL) and somatic coliphages (2700 plaque-forming units [PFU] per 100 mL) were measured after broadcasting slurry to wet soil followed by rainfall in fall 1998. Injection reduced the TP and DRP losses in surface runoff by 79 and 86%, respectively, compared with broadcasting (17 Oct. 1998-27 Oct. 1999). Corresponding numbers for fecal coliforms were 350 CFU (100 mL)(-1) and for somatic coliphages were 110 PFU (100 mL)(-1) in surface runoff after injection in October 1998. Slurry injection should be favored when spreading slurry amendments to grassland to avoid losses of P and fecal microorganisms in runoff to surface waters.

Investigation of Bioaerosols Released from Swine Farms using Conventional and Alternative Waste Treatment and Management Technologies

Microbial air pollution from concentrated animal feeding operations (CAFOs) has raised concerns about potential public health and environmental impacts. We investigated the levels of bioaerosols released from two swine farms using conventional lagoon-sprayfield technology and ten farms using alternative waste treatment and management technologies in the United States. In total, 424 microbial air samples taken at the 12 CAFOs were analyzed for several indicator and pathogenic microorganisms, including culturable bacteria and fungi, fecal coliform, Escherichia coli, Clostridium perfringens, bacteriophage, and Salmonella. At all of the investigated farms, bacterial concentrations at the downwind boundary were higher than those at the upwind boundary, suggesting that the farms are sources of microbial air contamination. In addition, fecal indicator microorganisms were found more frequently near barns and treatmenttechnology sites than upwind or downwind of the farms. Approximately 4.5% (19/424), 1.2% (5/424), 22.2% (94/424), and 12.3% (53/424) of samples were positive for fecal coliform, E. coli, Clostridium, and total coliphage, respectively. Based on statistical comparison of airborne fecal indicator concentrations at alternative treatment technology farms compared to control farms with conventional technology, three alternative waste treatment technologies appear to perform better at reducing the airborne release of fecal indicator microorganisms during on-farm treatment and management processes. These results demonstrate that airborne microbial contaminants are released from swine farms and pose possible exposure risks to farm workers and nearby neighbors. However, the release of airborne microorganisms appears to decrease significantly through the use of certain alternative waste management and treatment technologies.

The impact of sunlight on inactivation of indicator microorganisms both in river water and benthic biofilms

A detailed knowledge on decay or inactivation kinetics of faecal indicator microorganism in rivers is essential for control of bathing water quality. Both reliable inactivation rate coefficients for such kinetics and the knowledge on pathogen accumulation in benthic biofilms are needed for the assessment of river self purification capability and for being able to make decisions for an optimized water management. Therefore, the inactivation kinetics for main indicator microorganisms like faecal coliforms and intestinal Enterococci in water and on stones of the river Isar (Germany) were measured at artificial sunlight radiation. A flume was built, containing Isar water and sediment. By adding a pulse of pre-treated sewage water, the subsequently change of indicator bacteria levels in the bulk and biofilm phase is measured. Bacterial inactivation was mainly dependent on sunlight intensity. Mean inactivation rate coefficients in the experimental set up with river water obtained for a radiation intensity comparable to average midday sunlight in June in 50° north latitude ( I (290–390 nm) = 40.0 W/m 2) were found to be 21.4 d −1 for faecal coliforms and 20.0 d −1 for intestinal Enterococci. For a radiation intensity conform with the annual mean radiation in Germany ( I (290–390 nm) = 8.0 W/m 2) inactivation rate coefficients were 12.7 d −1 for faecal coliforms and 9.3 d −1 for intestinal Enterococci. A measurement without direct artificial sunlight ( I (290–390 nm) = 0.08 W/m 2) yields inactivation rate coefficients of 3.4 d −1 for faecal coliforms and 1.7 d −1 for intestinal Enterococci, which were similar to those found in wastewater treatment ponds. Due to re-growth and better environmental conditions the concentrations of faecal coliforms and intestinal Enterococci within the biofilm were 10 2 to 10 4 fold higher compared to the bulk water depending on the exposure time.

Isolamento de coliformes, estafilococos e enterococos de leite cru provenientes de tanques de refrigeração por expansão comunitários: identificação, ação lipolítica e proteolítica

Isolation and identification of microorganisms in raw milk is interesting from the viewpoint of public health, since, depending on the species isolated, directed actions may be taken to improve milk quality. Milk deterioration is mainly the result of the growth of psychrotrophic microorganisms that produce heat-resistant lipases and proteases which are not denatured during pasteurization, conferring rancid and sour flavors, respectively. Thus, this work aimed at isolating and identifying the main genera of bacteria belonging to the Enterobacteriaceae family, oxidase-positive Gram-negative, Staphylococcus and Enterococcus genera, as well as determining lipase and protease activity in 16 rural farms in Boa Esperanca-MG, Brazil. The Gram-negative bacteria were isolated in Eosin Methylene Blue (EMB) and Hektoen Enteric agar media. Staphylococci were isolated in Baird-Parker agar and Enterococcus in KF agar. Colonies of interest were collected and submitted to Gram stain and to catalase and oxidase tests. Following these procedures, the isolates selected were identified using Bactray I, II and III; Api 20 Strep and tests suggested by Bergey's Manual of Determinative Bacteriology. Sorological identification of Enterococcus was carried out using Prolex. Milk from the 16 rural properties contained strains of fecal microorganisms, such as Escherichia coli and Enterococcus from the Lancefield D group. Oxidase-positive Gram-negative bacteria were identified in five farms. Staphylococcus was found in 10 farms. Milk collected from the farms investigated contained microorganisms that compromise its quality. All the microorganism groups tested showed lipase and protease activities.

지표미생물을 이용한 시화호 유입수의 수질평가

Lake Shiwha, an artificial lake located near metropolitan Seoul, offers a unique water environment and has been suspected to have high levels of chemical and microbiological contaminations. Lake Shiwha was originally connected to the sea but currently has four major surface water inputs from agricultural, municipal, industrial areas and in addition an occasional inflow from the sea. The objectives of this study are to investigate the relative contribution of microbial contaminants from each of the inflowing surface waters and to identify appropriate microbial indicator organisms in this unique water environment. We measured the levels of microbial contaminations in the four inflowing surface waters. A number of microbial indicator organisms including total coliform (TC), fecal coliform (FC), E. coli, Enterococci, somatic and male-specific coliphages were analyzed. Bacterial indicator microorganisms were detected and quantified by the <TEX>$Colilert^{(R)},\;Enterolert^{(R)}$</TEX> kit. Surface water (50 l) was sampled by <TEX>$ViroCap^{TM}\;5"$</TEX> cartridge filters and analyzed by the single agar layer method for detecting coliphages. The concentrations of TC, FC, E. coli, and Enterococci were 1543 CFU/100 ml<TEX>${\sim}1.99{\times}10^6$</TEX> CFU/100 ml, 0 CFU/100 ml<TEX>${\sim}202$</TEX> CFU/100ml, 0 CFU/100 ml<TEX>${\sim}1.80{\sim}10^5$</TEX> CFU/100ml, 74 CFU/100 ml<TEX>${\sim}3408$</TEX> CFU/100 ml, respectively. The male-specific and somatic coliphages were detected in three different inflowing surface waters. Isolated E. coli and Enterococci strains were further analyzed by 16s rDNA amplification and subsequent phylogenetic analysis from Jungwang-chun, Ansan-chun, Banwol-chun and penstock of inflowing surface water. Our results indicated that the concentrations of different fecal indicator microorganisms might not be highly correlated with each other. Multiple microbial indicator organisms should be used for monitoring microbial contamination and microbial source tracking methods.

Frequent occurrence of the human‐specific Bacteroides fecal marker at an open coast marine beach: relationship to waves, tides and traditional indicators

Molecular genetic markers, such as those from fecal Bacteroides microorganisms, can link microbial pollution with its source, and have been used successfully in studies of sheltered aquatic environments. Their applicability to wave-driven, open coast environments has not been tested. We assessed the contribution of a tidal outlet to surf zone water quality in coastal Orange County, California, USA by measuring three traditional culture-based fecal indicator bacteria (FIB) as well as the human-specific Bacteroides molecular marker (HF marker) at four shoreline locations. We found that total and fecal coliform levels were higher during low tides than high tides at two of the four stations, and that this effect was strongest at the mouth of the tidal lagoon and decayed with distance from the outlet. The HF marker was detected in 23% and 47% of samples from the tidal outlet and 26% and 41% of samples from an adjacent recreational beach in 2005 and 2006 respectively. Surprisingly, the station farthest from the tidal outlet had the highest occurrence of the HF marker. We found no relationship between FIB abundance and occurrence of the HF marker for individual samples, but that when the data were considered together by year, higher FIB abundance was correlated with a higher incidence of the HF marker. DNA sequences of the HF marker recovered from this site were > 99% similar to those recovered from other states and countries, suggesting low global diversity of this marker. These data provide strong support for the idea that multiple time points and physical conditions should be considered when assessing coastal water quality.

Phenanthrene release from natural organic matter surrogates under simulated human gastrointestinal conditions

The aliphatic region of natural organic matter (NOM) can retain polycyclic aromatic hydrocarbons (PAH) due to the presence of non-polar binding sites. Thus NOM may act as a vehicle for entry of PAH into the gastrointestinal system in man and animals. In this study, the release of phenanthrene from the aliphatic NOM surrogates cutin and cutan was measured under simulated human gastrointestinal formulations using three treatments designed to simulate the biological and chemical conditions of the gastrointestinal environment. The three experimental treatments were composed of fecal microorganisms, chyme, and chyme+fecal microorganisms. Water was used as a control treatment. Phenanthrene laden biopolymer and a C18 membrane were immersed in each treatment. Phenanthrene was extracted from each membrane and measured with HPLC. Membrane-associated phenanthrene was taken to represent the fraction that had desorbed from the biopolymer. Cutin was found to yield an average phenanthrene release 55% higher than cutan (94% vs. 39%). A significant decrease ( p < 0.05 ) in phenanthrene release was observed in both the chyme and chyme+fecal microorganism treatments as compared to the water treatment (control). The presence of enteric microorganisms did not significantly influence phenanthrene release and did not reduce phenanthrene bioaccessibility in gastrointestinal chyme. Over 80% of the phenanthrene in cutin was recovered in the C18 matrix and its relative amount was uninfluenced by the treatments. For cutan, only 25–50% of the phenanthrene was recovered, suggesting that cutin-associated phenanthrene was more loosely bound. These data demonstrate that the fractions of NOM retained phenanthrene to a varying extent and thus the predictions of phenanthrene bioavailability should also be assessed on the basis of the constituents of the NOM matrix.

Fecal bacteria in the rivers of the Seine drainage network (France): Sources, fate and modelling

The Seine river watershed (France) is a deeply anthropogenically impacted area, due to the high population density, intense industrial activities and intensive agriculture. The water quality and ecological functioning of the different rivers of the Seine drainage network have been extensively studied during the last fifteen years within the framework of a large French multidisciplinary scientific program (PIREN Seine program). This paper presents a synthesis of the main data gained in the scope of this program concerning the microbiological water contamination of the rivers of the Seine drainage network. The more common indicator of fecal contamination (fecal coliforms) was mainly used; some complementary works used E. coli and intestinal enterococci as alternative fecal indicators. Point sources (outfall of wastewater treatment plants) and non point sources (surface runoff and soil leaching) of fecal pollution to the rivers of the watershed were quantified. Results showed that, at the scale of a large urbanised watershed as the Seine basin, the input of fecal micro-organisms by non-point sources is much lower than the inputs by point sources. However, the local impact of diffuse non-human sources (especially surface runoff of pastured fields) can be of major importance on the microbiological quality of small headwater rivers. Fecal contamination of the main rivers of the Seine watershed (Seine, Marne, Oise rivers) was studied showing high level of microbiological pollution when compared to European guidelines for bathing waters. The strong negative impact of treated wastewater effluents outfall on the microbiological quality of receiving rivers was observed in different areas of the watershed. Once released in rivers, culturable fecal bacteria disappeared relatively rapidly due to mortality (protozoan grazing, lysis) or loss of culturability induced by stress conditions (sunlight effect, nutrient concentration, temperature). Mortality rates of E. coli were studied in different types of rivers within the watershed showing, in summer conditions, no major difference in the mortality rates in small and large rivers. As a result of these studies, a module describing the dynamics of fecal bacteria has been developed and embedded within a hydro-ecological model describing the functioning of the rivers of the whole watershed (the SENEQUE model). Once validated, such a model can be used for testing predictive scenarios and thus can be a very useful tool for the management of microbiological water quality at the scale of the whole basin.

Influence of genotype and diet on steer performance, manure odor, and carriage of pathogenic and other fecal bacteria. III. Odorous compound production1,2

Three beef cattle diets were assessed for their potential to produce odorous compounds from cattle feces excreted during the growing and finishing periods. Eight pens containing 51 steers of varying proportions of Brahman and MARC III genotypes were fed either a chopped bromegrass hay diet or a corn silage diet for a 119-d growing period. After the growing period, all steers were switched to the same high-corn finishing diet (high corn) and fed to a target weight of 560 kg (finishing period). Fecal slurries were prepared from a composite of fresh fecal pats collected in each pen during both periods and incubated anaerobically. In additional flasks, starch, protein, or cellulose was added to the composite fecal subsamples to determine the preferred substrates for fermentation and odorous compound production. The content and composition of the fermentation products varied both initially and during the incubation, depending on the diet fed to the steers. The corn silage and high corn feces had the greater initial content of VFA (381.0 and 524.4 micromol/g of DM, respectively) compared with the bromegrass feces (139.3 micromol/g of DM) and accumulated more VFA than the bromegrass feces during the incubation. l-Lactic acid and VFA accumulation in the high corn and corn silage feces was at the expense of starch, based on starch loss and the production of straight-chain VFA. In the bromegrass feces, accumulation of branched-chain VFA and aromatic compounds and the low starch availability indicated that the protein in the feces was the primary source for odorous compound production. Substrate additions confirmed these conclusions. We conclude that starch availability was the primary factor determining accumulation and composition of malodorous fermentation products, and when starch was unavailable, fecal microorganisms utilized protein.

MODELING BACTERIA FATE AND TRANSPORT IN WATERSHEDS TO SUPPORT TMDLS

Fecal contamination of surface waters is a critical water-quality issue, leading to human illnesses and deaths. Total Maximum Daily Loads (TMDLs), which set pollutant limits, are being developed to address fecal bacteria impairments. Watershed models are widely used to support TMDLs, although their use for simulating in-stream fecal bacteria concentrations is somewhat rudimentary. This article provides an overview of fecal microorganism fate and transport within watersheds, describes current watershed models used to simulate microbial transport, and presents case studies demonstrating model use. Bacterial modeling capabilities and limitations for setting TMDL limits are described for two widely used watershed models (HSPF and SWAT) and for the load-duration method. Both HSPF and SWAT permit the user to discretize a watershed spatially and bacteria loads temporally. However, the options and flexibilities are limited. The models are also limited in their ability to describe bacterial life cycles and in their ability to adequately simulate bacteria concentrations during extreme climatic conditions. The load-duration method for developing TMDLs provides a good representation of overall water quality and needed water quality improvement, but intra-watershed contributions must be determined through supplemental sampling or through subsequent modeling that relates land use and hydrologic response to bacterial concentrations. Identified research needs include improved bacteria source characterization procedures, data to support such procedures, and modeling advances including better representation of bacteria life cycles, inclusion of more appropriate fate and transport processes, improved simulation of catastrophic conditions, and creation of a decision support tool to aid users in selecting an appropriate model or method for TMDL development.

Screening for Tannin Degradation by Rumen and Faecal Samples of Wild and Domestic Animals in Ethiopia

Tannins limit the use of fodder trees as feed for ruminants. Removal of the effects of tannins would thus improve the nutritional quality of these trees. This prompted the study to evaluate the effect of rumen or faecal mixed cultures from different animals on tannin degradation. Tannin extracts, tannic acid and gallic acid were used to enrich media to assess if rumen or faecal mixed cultures could degrade the phenolic compounds. Rumen fluid of Acacia-adapted sheep, sheep fed on wheat bran, bush duikers (Sylvicapra grimmia) and goats fed on Leucaena pallida and Sesbania goetzei were separately inoculated into Growth Study Medium (GSM) and incubated for 5-15 days. Faecal samples from dikdik (Madoqua guentheri), camel (Camelus dromedarius), zebra (Equus quagga), Grant’s gazelle (Gazella granti) and hartebeest (Alcelaphus buselaphus) were also separately inoculated into GSM media and incubated from 3-5 days. TLC results showed that mixed cultures from rumen fluids of Acacia-adapted sheep, sheep on wheat bran, goats on Leucaena pallida and Sesbania goetzei partially hydrolysed tannic acid to pyrogallol. Complete degradation of the heterocyclic ring in tannic acid and gallic acid was achieved by the mixed cultures from the faecal samples of dikdik and this was confirmed by HPLC. Mixed cultures from faecal samples of camel hydrolysed gallic acid to phloroglucinol. This study has demonstrated that faecal microorganisms of Ethiopian dikdik could completely degrade hydrolysable tannin.

Microbial Indicators of Faecal Contamination in Water: A Current Perspective

It is well documented that faecal contamination of drinking water has caused numerous disease outbreaks. Because the risks of disease outbreaks correlate with the incidence of faecal contamination, faecal bacteria are used as indicators of faecal contamination and hence, the possible presence of disease-causing organisms. However, different microbiological faecal indicators are used in different countries and jurisdictions. Therefore, it is important to understand the potentials and limitations of these indicator organisms before realistically implementing guidelines and regulations to safeguard our water resources. This review considers the history of indicator organisms, the evolution of the analytical methodologies (biochemical and molecular) and addresses the advantages and limitations of current faecal indicator microorganisms.

Sterols and fecal indicator microorganisms in sediments from Admiralty Bay, Antarctica

Sediments from the proximity of Ferraz station outfall, located in Admiralty Bay, Antarctica, were analyzed for fecal indicator microorganisms and sterols during the austral summer of 1999/2000 in order to assess human sewage input. Concentrations of total sterols and coprostanol ranged from 0.09 to 19.6 ¼g.g-1 and &lt; 0.01 and 14.0 ¼g.g-1 dry weight (dw), respectively. Our analyses indicated that only sites within to 400m of the sewage outfall exhibited a sterol signal characteristic of human sewage input. Low levels of coprostanol and high levels of cholesterol in distant sites could be attributed to natural sources such as marine mammals and planktonic organisms. Fecal indicator microorganisms (E. coli, fecal streptococci and Clostridium perfringens) were non-detectable beyond 50m from outfall. Both indicators (sterols and fecal indicator microorganisms) produced consistent data and fecal sterol parameters have sho wn themselves to be efficient in the evaluation of trace amounts of fecal material. This study concluded that sewage contamination is limited to the immediate vicinity of the sewage outfall. In general, the concentration of fecal sterols and microbiological indicators were lower than in other Antarctic areas.

β‐lactam antibiotic resistance in aerobic commensal fecal flora of newborns

The purpose of the present paper was to prospectively determine the rate of beta-lactam antibiotic resistance in commensal fecal flora of newborns and the risk factors leading to this colonization. One hundred and eighteen newborns in the neonatal intensive care unit (NICU) group (n = 38), the neonatal ward group (n = 36), and the control group (n = 44) were enrolled. Three or four stool samples were obtained from each infant, 15 days apart. Bacterial growth in Eozin Methylene Blue (EMB) agar + 10 microg ampicillin/mL was considered to be ampicillin-resistant bacteria, and antibiotic susceptibility and extended spectrum beta-lactamases (ESBL) production was investigated in those bacteria. Colonization with ampicillin-resistant commensal fecal flora microorganisms was determined in 75.2% of 367 stool samples. Klebsiella spp. and Escherichia coli were identified in 59% and 41% of the samples, respectively. The lowest rate of ampicillin-resistant bacterial colonization was determined in the NICU group. Microorganisms producing ESBL were identified in 33.7% of 367 stool samples. Fifty-one and 73 of ampicillin-resistant E. coli and Klebsiella spp. isolates were determined to produce ESBL, respectively. There was no difference with respect to colonization with ESBL-producing microorganisms between the three groups. When risk factors related to colonization with ESBL-producing microorganisms in stool samples were evaluated through the whole study period, very low birthweight, vaginal delivery, infant antibiotic usage, maternal antibiotic usage, male sex and premature rupture of membranes were determined as risk factors, while feeding with nasogastric tube was identified as a protective factor. When the risk factors related to colonization with ESBL-producing bacteria in stool samples after discharge from the hospital were evaluated, failure to feed breast milk was determined as the only risk factor. To decrease mortality and morbidity due to infection caused by resistant microorganisms colonized in the intestine flora of the infant, protection of normal non-pathogenic bacterial colonization is important. This can be provided by feeding neonates with breast milk, application of infection control measures efficiently, and limitation of antibiotic usage only to strict clinical indications.

Dietary fiber decreases ammonia levels in patients with cirrhosis

No abstract.

Gas production technique in the evaluation of horse feeds using equine faeces and rumen liquid as inoculum source 1. Fermentation kinetics

The in vitro gas production is a widely used technique for the evaluation of feeds for ruminant animals. Although it measures rate and extension of gas production during feed fermentation in culture medium, rumen inoculum from operated animals (fistulae) is required. Faecal microorganisms function similarly to those in the rumen; they decompose feed and do not require operated animals. The objective of the present experiment was to compare rumen liquor and equine faeces as source of inoculum in the gas production technique.

Gas production technique in the evaluation of horse feeds using equine faeces and rumen liquid as inoculum source 2. In vitro digestibility

In vitro and in situ techniques for research on ruminants are currently much in focus. Since they have good correlations with in vivo data, they are feasible alternatives to predict the nutrition rates of feeds and may be applied in equine research on in vivo apparent digestibility. On the other hand, the disadvantage of these methods is due to the fact that fistulated animals are required to obtain the inoculum. Theodorou et al., (1994) developed an extremely promising gas production technique to assess feeds for ruminants, but still require rumen inoculum obtained from operated animals. Faecal microorganisms function similarly to those in the rumen and in the large intestine of equines. The objective this experiment was to compare rumen liquor and equine faeces as inoculum to determine in vitro digestibility of equine feeds.

Use of reflectors to enhance the synergistic effects of solar heating and solar wavelengths to disinfect drinking water sources

Aluminum reflectors were added to solar units designed to inactivate faecal microorganisms (faecal coliform, E. coli, enterococci, FRNA coliphage, C. perfringens) in stream water and diluted sewage by the two mechanisms (solar heat, solar UV) known to inactivate microorganisms. During sunny conditions, solar units with and without reflectors inactivated E. coli to <1 CFU/100 ml to meet drinking water standards. Solar units with reflectors disinfected the water sooner by increasing the water temperature by 8-10 degrees C to 64-75 degrees C. However, FRNA coliphages were still detected in these samples, indicating that this treatment may not inactivate pathogenic human enteric viruses. During cloudy conditions, reflectors only increased the water temperature by 3-4 degrees C to a maximum of 43-49 degrees C and E. coli was not completely inactivated. Under sunny and cloudy conditions, the UV wavelengths of sunlight worked synergistically with increasing water temperatures and were able to disinfect microorganisms at temperatures (45-56 degrees C), which were not effective in inactivating microorganisms. Relative resistance to the solar disinfecting effects were C. perfringens > FRNA coliphages > enterococci > E. coli > faecal coliform.

Differences in microbial activity of digesta from three sections of the porcine large intestine according to in vitro fermentation of carbohydrate‐rich substrates

AbstractTo determine whether faecal microorganisms can represent the entire large intestinal population, samples from caecum, mid‐colon and rectum of three adult pigs were used for the in vitro fermentation of fructo‐oligosaccharide (FOS), potato starch, wheat bran and oat hulls. The cumulative gas production technique measured fermentation kinetics and end‐products such as total gas, NH3 and volatile fatty acids (VFA). There were significant differences in the fermentability of substrates, in terms of both kinetics and end‐products. More relevant to this study, there were also differences between pigs in respect of total gas production, the rate of gas production (RM) and VFA production. For large intestine sections, there were more VFA from mid‐colon and rectal inocula compared with that from the caecum (p &lt; 0.0001). Total gas, RM and NH3 were highest for rectal, intermediate for mid‐colon and lowest for caecal inocula (p &lt; 0.0001). It was concluded that, while faecal sampling might overestimate caecal fermentation, its use is valid for in vitro assessment of large intestinal fermentation. However, differences between pigs indicate that a mix of samples from several animals remains important. Copyright © 2004 Society of Chemical Industry

Long-term survival of human faecal microorganisms on the Antarctic Peninsula

Human faecal waste has been discarded at inland Antarctic sites for over 100 years, but little is known about the long-term survival of faecal microorganisms in the Antarctic terrestrial environment or the environmental impact. This study identified viable faecal microorganisms in 30–40 year old human faeces sampled from the waste dump at Fossil Bluff Field Station, Alexander Island, Antarctic Peninsula. Viable aerobic and anaerobic bacteria were predominantly spore-forming varieties (Bacillus and Clostridium spp.). Faecal coliform bacteria were not detected, indicating that they are less able to survive Antarctic environmental conditions than spore-forming bacteria. In recent years, regional warming around the Antarctic Peninsula has caused a decrease in permanent snow cover around nunataks and coastal regions. As a result, previously buried toilet pits, depots and food dumps are now melting out and Antarctic Treaty Parties face the legacy of waste dumped in the Antarctic terrestrial environment by earlier expeditions. Previous faecal waste disposal on land may now start to produce detectable environmental pollution as well as potential health and scientific problems.