Microbial Volatile Organic Compounds Research Articles

Elucidating the biosynthetic pathways of volatile organic compounds in Mycobacterium tuberculosis through a computational approach.

Microbial volatile organic compounds (VOCs) have gained prominence in the recent past for their potential use as disease markers. The discovery of microbial VOCs has benefited 'difficult to detect' diseases such as tuberculosis (TB). Few of the identified VOCs of Mycobacterium tuberculosis (Mtb) are currently being explored for their diagnostic potential. However, very little is known about the biosynthesis of these small lipophilic molecules. Here, we propose putative biosynthetic pathways in Mycobacterium tuberculosis for three VOCs, namely methyl nicotinate, methyl phenylacetate and methyl p-anisate, using computational approaches. In particular, we identify S-adenosyl methionine (SAM) transferases that play a crucial role in esterification of the acids to the final product. Our results provide important insights into the specificity of these pathways to Mtb species.

Application of solid-phase microextraction with gas chromatography and mass spectrometry for the early detection of active moulds on historical woollen objects.

The goal of this work was to determine the microbial volatile organic compounds emitted by moulds growing on wool in search of particular volatiles mentioned in the literature as indicators of active mould growth. The keratinolytically active fungi were inoculated on two types of media: (1) samples of wool placed on broths, and (2) on broths containing amino acids that are elements of the structure of keratin. All samples were prepared inside 20 mL vials (closed system). In the first case (1) the broths did not contain any sources of organic carbon, nitrogen, or sulfur, i.e. wool was the only nutrient for the moulds. A third type of sample was historical wool prepared in a Petri dish without a broth and inoculated with a keratinolytically active mould (open system). The microbial volatiles emitted by moulds were sampled with the headspace solid-phase microextraction method. Volatiles extracted on solid-phase microextraction fibers were analyzed in a gas chromatography with mass spectrometry system. Qualitative and quantitative analyses of chromatograms were carried out in search of indicators of metabolic activity. The results showed that there are three groups of volatiles that can be used for the detection of active forms of moulds on woollen objects.

Identification of endophytic Bacillus velezensis ZSY-1 strain and antifungal activity of its volatile compounds against Alternaria solani and Botrytis cinerea

Soil microbes can release volatile organic compounds (VOCs) that influence plant growth and pathogen resistance. Screening these microbial VOCs for their antifungal activity is a new strategy for developing biopesticides. However, the ability of endophytic bacteria to synthesize VOCs is understudied. Here, we characterized VOCs produced by Bacillus velezensis ZSY-1, and tested their antifungal activity against plant pathogenic fungi. Strain ZSY-1, isolated from Chinese catalpa, was identified as B. velezensis, based on sequences of its 16S rRNA, gyrA, and gyrB genes. Bioassay of VOCs from ZSY-1 was conducted using the two-sealed base-plates method. Volatile organic compounds from ZSY-1 exhibited significant antifungal activity against Alternaria solani, Botrytis cinerea, Valsa mali, Monilinia fructicola, Fusarium oxysporum f. sp. capsicum, and Colletotrichum lindemuthianum; the inhibition rates were 81.1%, 93.8%, 83.2%, 80.9%, 76.7%, and 70.6%, respectively. Gas chromatography–mass spectrometry of solid phase microextraction samples (SPME-GC–MS) revealed 29 unique VOCs released by strain ZSY-1. Among these compounds, 2-tridecanone, pyrazine (2,5-dimethyl), benzothiazole, and phenol (4-chloro-3-methyl) had much higher peak areas than the main compound types. However, the most common VOC types were ketones (seven unique compounds), alcohols (six), and alkanes (six). Pyrazine (2,5-dimethyl), benzothiazole, 4-chloro-3-methyl, and phenol-2,4-bis (1,1-dimethylethyl) had significant antifungal activity against A. solani and B. cinerea. In fact, we report for the first time that phenol (4-chloro-3-methyl) synthesized by B. velezensis can inhibit the growth of plant pathogenic fungi. Based on our study of antifungal activity, pyrazine (2,5-dimethyl), benzothiazole, phenol (4-chloro-3-methyl), and phenol-2,4-bis (1,1-dimethylethyl) are promising bioagents for controlling tomato fungal diseases such as early blight and grey mold.

Volatile organic compounds of possible microbial origin and their risks on childhood asthma and allergies within damp homes

BackgroundRisk of indoor exposure to volatile organic compounds of purported microbial origin on childhood symptoms of wheezing, rhinitis, and/or eczema, and doctor-diagnosed asthma, rhinitis, and eczema, respectively, remain unclear. ObjectiveTo test hypotheses that total sum of 28 microbial volatile organic compounds (Σ26 MVOCs): 1) poses independent risk on doctor-diagnosed asthma, rhinitis, and eczema, respectively, as well as multiple symptom presentation with a minimum of the two of the above conditions (i.e. case); 2) is associated with significant interaction with absolute humidity (AH) on additive scale. MethodsIn a case-control investigation, 198 cases and 202 controls were examined during November 2001 – March 2002 period through home indoor air sampling, air quality inspection, and health outcome ascertainment. ResultsNot only the Σ28 MVOCs but also the global MVOC index were significantly higher within the homes of the cases with a high AH, compared to the controls with a low AH (all Ps<0.001). Only the cases, but not the controls, were associated with a dose-dependent increase in the exposure variables of interest (Σ28 MVOCs) per quartile increase in AH (P<0.0001 for the cases; P=0.780 for the controls). Only among the children who live in a high AH homes, a natural log (ln)-unit of Σ 28 MVOCs was associated with 2.5-times greater odds of the case status (95% CI, 1.0–6.2; P=0.046), compared to 0.7-times the odds (95% CI, 0.4–1.0; P=0.074) of the same outcome among the low AH homes. Specifically, joint exposure to a high MVOCs and high AH was associated with 2.6-times greater odds of the doctor-diagnosed asthma status (95% CI, 0.7–8.91; P=0.137). ConclusionJoint occurrence of high Σ28 MVOCs and AH was associated with a significant increase in the case status and asthma risks in an additive scale.

The methylerythritol 4-phosphate pathway as a metabolic crossroad for microbial and plant volatile organic compounds.

This article comments on: Volatile compounds emitted by diverse phytopathogenic microorganisms promote plant growth and flowering through cytokinin action.

Volatile organic compounds emitted by Trichoderma species mediate plant growth.

BackgroundMany Trichoderma species are applied as biofungicides and biofertilizers to agricultural soils to enhance crop growth. These filamentous fungi have the ability to reduce plant diseases and promote plant growth and productivity through overlapping modes of action including induced systemic resistance, antibiosis, enhanced nutrient efficiency, and myco-parasitism. Trichoderma species are prolific producers of many small metabolites with antifungal, antibacterial, and anticancer properties. Volatile metabolites of Trichoderma also have the ability to induce resistance to plant pathogens leading to improved plant health. In this study, Arabidopsis plants were exposed to mixtures of volatile organic compounds (VOCs) emitted by growing cultures of Trichoderma from 20 strains, representing 11 different Trichoderma species.ResultsWe identified nine Trichoderma strains that produced plant growth promoting VOCs. Exposure to mixtures of VOCs emitted by these strains increased plant biomass (37.1–41.6 %) and chlorophyll content (82.5–89.3 %). Trichoderma volatile-mediated changes in plant growth were strain- and species-specific. VOCs emitted by T. pseudokoningii (CBS 130756) were associated with the greatest Arabidopsis growth promotion. One strain, T. atroviride (CBS 01-209), in our screen decreased growth (50.5 %) and chlorophyll production (13.1 %). Similarly, tomatoes exposed to VOCs from T. viride (BBA 70239) showed a significant increase in plant biomass (>99 %), larger plant size, and significant development of lateral roots. We also observed that the tomato plant growths were dependent on the duration of the volatile exposure. A GC–MS analysis of VOCs from Trichoderma strains identified more than 141 unique compounds including several unknown sesquiterpenes, diterpenes, and tetraterpenes.ConclusionsPlants grown in the presence of fungal VOCs emitted by different species and strains of Trichoderma exhibited a range of effects. This study demonstrates that the blend of volatiles produced by actively growing fungi and volatile exposure time in plant development both influence the outcome of volatile-mediated interactions. Only some of our growth promoting strains produced microbial VOCs known to enhance plant growth. Compounds such as 6-pentyl-2H-pyran-2-one were not common to all promoting strains. We found that biostimulatory strains tended to have a larger number of complex terpenes which may explain the variation in growth induced by different Trichoderma strains.

Analysis of Plant Growth-Promoting Effects of Fluorescent Pseudomonas Strains Isolated from Mentha piperita Rhizosphere and Effects of Their Volatile Organic Compounds on Essential Oil Composition.

Many species or strains of the genus Pseudomonas have been characterized as plant growth promoting rhizobacteria (PGPR). We used a combination of phenotypic and genotypic techniques to analyze the community of fluorescent Pseudomonas strains in the rhizosphere of commercially grown Mentha piperita (peppermint). Biochemical techniques, Amplified rDNA Restriction Analysis (ARDRA), and 16S rRNA gene sequence analysis revealed that the majority of the isolated native fluorescent strains were P. putida. Use of two Repetitive Sequence-based PCR (rep-PCR) techniques, BOX-PCR and ERIC-PCR, allowed us to evaluate diversity among the native strains and to more effectively distinguish among them. PGPR activity was tested for the native strains and reference strain P. fluorescens WCS417r. Micropropagated M. piperita plantlets were exposed to microbial volatile organic compounds (mVOCs) emitted by the bacterial strains, and plant biomass parameters and production of essential oils (EOs) were measured. mVOCs from 11 of the native strains caused an increase in shoot fresh weight. mVOCs from three native strains (SJ04, SJ25, SJ48) induced changes in M. pierita EO composition. The mVOCs caused a reduction of metabolites in the monoterpene pathway, for example menthofuran, and an increase in menthol production. Menthol production is the primary indicator of EO quality. The mVOCs produced by native strains SJ04, SJ25, SJ48, and strain WCS417r were analyzed. The obtained mVOC chromatographic profiles were unique for each of the three native strains analyzed, containing varying hydrocarbon, aromatic, and alogenic compounds. The differential effects of the strains were most likely due to the specific mixtures of mVOCs emitted by each strain, suggesting a synergistic effect occurs among the compounds present.

Detection of volatile metabolites of moulds isolated from a contaminated library

The principal fungal species isolated from a contaminated library environment were tested for their microbial volatile organic compound (MVOC) production ability. Aspergillus creber, A. penicillioides, Cladosporium cladosporioides, Eurotium chevalieri, E. halophilicum, Penicillium brevicompactum and P. chrysogenum were cultivated on suitable culture media inside sample bottles specifically designed and created for direct MVOC injection to a GC–MS instrument. The fungal emissions were monitored over several weeks to detect changes with the aging of the colonies, monitored also by respirometric tests. A total of 55 different MVOCs were detected and isopropyl alcohol, 3-methyl-1-butanol and 2-butanone were the principal compounds in common between the selected fungal species. Moreover, 2,4-dimethylheptane, 1,4-pentadiene, styrene, ethanol, 2-methyl-1-butanol, acetone, furan and 2-methylfuran were the most detected compounds. For the first time, the MVOC production for particular fungal species was detected. The species A. creber, which belongs to the recently revised group Aspergillus section Versicolores, was characterized by the production of ethanol, furan and 1,4-pentadiene. For the xerophilic fungus E. halophilicum, specific production of acetone, 2-butanone and 1,4-pentadiene was detected, supported also by respirometric data. The results demonstrated the potential use of this method for the detection of fungal contamination phenomena inside Cultural Heritage's preservation environments.

Decay control in the postharvest system: Role of microbial and plant volatile organic compounds

Significant postharvest losses occur during the supply chain of fresh produce. Postharvest decay is one of the main factors that determines losses and compromises the quality of fruit and vegetables. Traditionally postharvest decay control is achieved using chemical fungicides; however, the important concerns relating to environmental and human health require the development of novel methods for the control of postharvest decay. Furthermore, the consumer demand and the purchasing power are higher for fresh produce that are free from pesticide application. This review highlights the research literature based information on the application of microbial and plant volatile organic compounds (VOCs) to control postharvest decay, their practical applications in postharvest systems and the future perspectives. The volatile nature of VOCs could be potentially employed with success as gaseous treatments in a process defined ‘biofumigation’. Plant-produced volatiles including among others, aldehydes such as acetaldehyde, 2-E-hexenal and benzaldehyde, alcohols such as ethanol and acetic acid, essential oils (EOs) and isothiocyanates (ITCs) and microbial volatile organic compounds have been recognised as potential substances in preventing pathogenic infections in many horticultural commodities. However, some issues have to be well elucidated in order to admit these substances in a large-scale application to improve the competitiveness of the fresh produce at the quality stringent EU, USA, and the Japanese markets. The main concern are related to the registration process, but also VOCs degradation and residues in fruit, formulation and organoleptic impact, are aspects that have to be thoroughly considered prior to commercialisation of the selected VOC. Furthermore, VOCs could have an effective role for an eco-chemical approach in postharvest disease control since these biobased products, if compared to conventional ones, can offer clear environmental benefits due to their renewability, biodegradability and hypotoxicity.

Effects of Growth Parameters on the Analysis of Aspergillus flavus Volatile Metabolites

Aspergillus flavus produces dangerous secondary metabolites known as aflatoxins, which are toxic and carcinogenic, and their contamination of agricultural products results in health issues and economic hardships in the U.S. and around the world. Early identification of aflatoxigenic isolates of A. flavus is the key in the management of these fungi. An emerging detection method for specific fungi identification involves the analysis of microbial volatile organic compounds (MVOCs) released by the fungi. Complicating this approach is the understanding that many factors influence metabolic production, including growth parameters, such as growth media, temperature, spore counts and oxidation stress. In addition, analytical and data analysis methods can also influence the results. Several growth and analysis methods were evaluated and optimized in order to better understand the effect of the methods on fungi MVOC signatures. The results indicate that carboxen/polydimethylsiloxane (CAR/PDMS) has the best extraction efficiency for the MVOCs emitted by A. flavus. Both chemical defined agar (CDA) and chemical defined liquid (CDL) are suitable growth media for MVOC emission studies. The highest MVOC production was found at 30 °C. Log transformation was considered one of the best data pretreatment methods when analyzing MVOC data and resulted in the best principal component analysis (PCA) clustering in the experiments with different growth media. This study aims to elucidate fungal volatile organic compounds (VOCs) differences due to variations in growth parameters as a first step in the development of an analytical method for the monitoring of aflatoxigenic A. flavus contamination in crop storage facilities.

Non-microbial sources of microbial volatile organic compounds

BackgroundThe question regarding the true sources of the purported microbial volatile organic compounds (MVOCs) remains unanswered. ObjectiveTo identify microbial, as well as non-microbial sources of 28 compounds, which are commonly accepted as microbial VOCs (i.e. primary outcome of interest is Σ 28 VOCs). MethodsIn a cross-sectional investigation of 390 homes, six building inspectors assessed water/mold damage, took air and dust samples, and measured environmental conditions (i.e., absolute humidity (AH, g/m3), temperature (°C), ventilation rate (ACH)). The air sample was analyzed for volatile organic compounds (μg/m3) and; dust samples were analyzed for total viable fungal concentration (CFU/g) and six phthalates (mg/g dust). Four benchmark variables of the underlying sources were defined as highest quartile categories of: 1) the total concentration of 17 propylene glycol and propylene glycol ethers (Σ17 PGEs) in the air sample; 2) 2,2,4-trimethyl-1,3-pentanediol monoisobutyrate (TMPD-MIB) in the air sample; 3) semi-quantitative mold index; and 4) total fungal load (CFU/g). ResultsWithin severely damp homes, co-occurrence of the highest quartile concentration of either Σ17 PGEs or TMPD-MIB were respectively associated with a significantly higher median concentration of Σ 28 VOCs (8.05 and 13.38μg/m3, respectively) compared to the reference homes (4.30 and 4.86μg/m3, respectively, both Ps ≤0.002). Furthermore, the homes within the highest quartile range for Σ fungal load as well as AH were associated with a significantly increased median Σ 28 VOCs compared to the reference group (8.74 vs. 4.32μg/m3, P=0.001). Within the final model of multiple indoor sources on Σ 28 VOCs, one natural log-unit increase in summed concentration of Σ17 PGEs, plus TMPD-MIB (Σ 17 PGEs + TMPD-MIB) was associated with 1.8-times (95% CI, 1.3–2.5), greater likelihood of having a highest quartile of Σ 28 VOCs, after adjusting for absolute humidity, history of repainting at least one room, ventilation rate, and mold index (P-value =0.001). Homes deemed severely mold damaged (i.e., mold index =1) were associated with 1.7-times (95% CI, 0.8—3.6), greater likelihood of having a highest quartile of Σ 28 VOCs, even though such likelihood was not significant (P-value =0.164). In addition, absolute humidity appeared to positively interact with mold index to significantly elevate the prevalence of the highest quartile category of Σ 28 VOCs. ConclusionThe indoor concentration of Σ 28 VOCs, which are widely accepted as MVOCs, are significantly associated with the markers of synthetic (i.e. Σ17 PGEs and TMPD-MIB), and to less extent, microbial (i.e., mold index) sources.

Discrimination of mushroom disease‐related mould species based solely on unprocessed chromatograms

AbstractAgaricus bisporus A15 species (bisporic button mushroom) and its two main mould diseases (Mycogone perniciosa and Trichoderma aggressivum) were analysed using headspace solid‐phase microextraction sampling coupled with gas chromatograpy–mass spectrometry analysis. The presence or absence of mushroom disease‐related moulds can easily be detected and monitored in the air by headspace solid‐phase microextraction gas chromatograpy–mass spectrometry via their emitted microbial volatile organic compounds. Detrended fluctuation analysis (DFA) was first applied to distinguish different mould samples based on their unprocessed total ion chromatograms, which describe the air polluted by microbial volatile organic compounds. A two‐dimensional plot, generated from the results of DFA, visualizes the relationship of the analysed samples. The pattern found by DFA was compared with the pattern found by the traditionally applied principal component analysis. Cluster analysis (using Euclidean distance and Ward's method) of the principal component analysis scores and DFA coefficients showed characteristic groupings. A methodology is introduced, which uses the unprocessed chromatogram, without any time‐consuming feature extraction and can indicate the presence of infected samples. The proposed methodology is able to give a support to the mushroom growers to indicate different mushroom disease‐related infection via air monitoring. Additionally, DFA is a sample‐independent and universal method. Hence, it can be also applied to distinguish unprocessed chromatograms produced by any other analytical equipment. Copyright © 2016 John Wiley &amp; Sons, Ltd.

Release and characteristics of fungal fragments in various conditions

Intact spores and submicrometer size fragments are released from moldy building materials during growth and sporulation. It is unclear whether all fragments originate from fungal growth or if small pieces of building materials are also aerosolized as a result of microbial decomposition. In addition, particles may be formed through nucleation from secondary metabolites of fungi, such as microbial volatile organic compounds (MVOCs). In this study, we used the elemental composition of particles to characterize the origin of submicrometer fragments released from materials contaminated by fungi.Particles from three fungal species (Aspergillus versicolor, Cladosporium cladosporioides and Penicillium brevicompactum), grown on agar, wood and gypsum board were aerosolized using the Fungal Spore Source Strength Tester (FSSST) at three air velocities (5, 16 and 27m/s). Released spores (optical size, dp≥0.8μm) and fragments (dp≤0.8μm) were counted using direct-reading optical aerosol instruments. Particles were also collected on filters, and their morphology and elemental composition analyzed using scanning electron microscopes (SEMs) coupled with an Energy-Dispersive X-ray spectroscopy (EDX).Among the studied factors, air velocity resulted in the most consistent trends in the release of fungal particles. Total concentrations of both fragments and spores increased with an increase in air velocity for all species whereas fragment–spore (F/S) ratios decreased. EDX analysis showed common elements, such as C, O, Mg and Ca, for blank material samples and fungal growth. However, N and P were exclusive to the fungal growth, and therefore were used to differentiate biological fragments from non-biological ones. Our results indicated that majority of fragments contained N and P.Because we observed increased release of fragments with increased air velocities, nucleation of MVOCs was likely not a relevant process in the formation of fungal fragments. Based on elemental composition, most fragments originated from fungi, but also fragments from growth material were detected.

Study of Viability of Solid-Phase Microextraction, in vivo, in the Extraction of Microbial Volatile Organic Compounds Associated to the Pigment Production Process by the Monascus Fungus, in Submerged Fermentation

Microbial volatile organic compounds (MVOCs) are present in several production processes in biotechnology. In this study it is evaluated the viability of use of a method involving solidphase microextraction (SPME), in vivo SPME, in the extraction of MVOCs, associated with the pigment production process by the Monascus fungus. PDMS/Car/DVB (50/30 μm) fiber in the headspace mode (HS-SPME) and gas chromatography-mass spectrometry (GC-MS) were used to fermentation broth study. Seventeen compounds were found associated with the presence of the fungus, being the main ones ethanol, 2-methyl-propanol, 3-methyl-butanol, 2-methyl-butanol and 2-phenyl-ethanol. These compounds have maximum concentration of 313.87, 5.51, 2.37, 0.95 and 0.70 mg L −1 . The values of biomass and red pigment found for fermentation for ten days were 4.03 ± 0.21 g L −1 and 3.96 ± 0.17 (UA480). Regular MVOC productions were observed in this study, which were useful in the prediction and control of fermentation by Monascus fungus.

真菌類に由来する揮発性有機化合物の木材保存への可能性

真菌類に由来する揮発性有機化合物の木材保存への可能性

Ocena możliwości zastosowania analizy lotnych związków organicznych do detekcji aktywności mikrobiologicznej na przykładzie badań przeprowadzonych w Muzeum Narodowym w Krakowie

An evaluation of the viability of using volatile organic compound (VOC) measurements to detect mould was part of a VOC analysis carried out on the indoor air in selected rooms at the National Museum in Cracow. The simple assumption in this method is that moulds can be detected in any given place based on the identification of microbial volatile organic compounds (MVOCs) that they emit into their surroundings. This mould detection procedure provides an alternative to the much more time-consuming traditional microbiological tests. Combining the results of VOC and microbial analysis with data from the literature shows that, in the rooms investigated, there is a correlation between the mould species identified and MVOCs. This suggests that the use of MVOC measurements to detect mould is possible but the method still needs to be developed, especially for museums and historical buildings.

Optimization of headspace solid phase microextraction for the analysis of microbial volatile organic compounds emitted by fungi: Application to historical objects

The main goal of this work was to optimize the SPME sampling method for measuring microbial volatile organic compounds (MVOCs) emitted by active molds that may deteriorate historical objects. A series of artificially aged model materials that resemble those found in historical objects was prepared and evaluated after exposure to four different types of fungi. The investigated pairs consisted of: Alternaria alternata on silk, Aspergillus niger on parchment, Chaetomium globosum on paper and wool, and Cladosporium herbarum on paper. First of all, a selection of the most efficient SPME fibers was carried out as there are six different types of fibers commercially available. It was important to find a fiber that absorbs the biggest number and the highest amount of MVOCs. The results allowed establishing and selecting the DVB/CAR/PDMS fiber as the most effective SPME fiber for this kind of an analysis. Another task was to optimize the time of MVOCs extraction on the fiber. It was recognized that a time between 12 and 24h is adequate for absorbing a high enough amount of MVOCs. In the last step the temperature of MVOCs desorption in the GC injection port was optimized. It was found that desorption at a temperature of 250°C allowed obtaining chromatograms with the highest abundances of compounds. To the best of our knowledge this work constitutes the first attempt of the SPME method optimization for sampling MVOCs emitted by molds growing on historical objects.

Analysis of microbial volatile organic compounds produced by wood-decay fungi.

Microbial volatile organic compounds (MVOCs) produced by the brown-rot fungus Fomitopsis palustris and white-rot fungus Trametes versicolor grown on wood chip and potato dextrose agar were analyzed by GC-MS. In total, 110 organic compounds were identified as MVOCs. Among them, only 23 were MVOCs commonly observed in both types of fungi, indicating that the fungi have differential MVOC expression profiles. In addition, F. palustris and T. versicolor produced 38 and 22 MVOCs, respectively, which were detected only after cultivation on wood chip. This suggests that the fungi specifically released these MVOCs when degrading the cell-wall structure of the wood. Time course analysis of MVOC emission showed that both types of fungi produced the majority of MVOCs during the active phase of wood degradation. As both fungi produced specific MVOCs in the course of wood degradation indicates the possibility of the application of MVOCs as detection markers for wood-decay fungus existing in woody materials.

Microbiological spoilage and volatiles production of gutted European sea bass stored under air and commercial modified atmosphere package at 2 °C

Microbiological, sensory, TVB-N and TMA-N changes and Volatile Organic Compounds (VOCs) detection using the SPME/GC–MS technique, were performed to evaluate potential chemical spoilage indices (CSI) of gutted sea bass (Dicentrarchus labrax) stored at 2 °C under air and in modified atmosphere packaging (MAP CO2: 60%, O2: 10%, N2: 30%). Shelf-life, determined by sensory evaluation, of gutted sea bass stored at 2 °C under air and MAP was 9 and 13 d respectively. Pseudomonas and H2S producing bacteria were among the dominant spoilage microorganisms under both storage conditions, while Lactic Acid Bacteria (LAB) and Brochothrix thermosphacta were co-dominant with Pseudomonas and H2S producing bacteria under MAP. The traditional CSIs such as TVB-N and TMA-N were increased substantially only at the late stages of storage or after rejection of the products, making them unsuitable for freshness/spoilage monitoring throughout storage. A substantial number of VOCs attributed to microbiological action or chemical activity, were detected including alcohols, aldehydes, ketones, organic acids and esters. The level of microbial origin VOCs such as ethanol, 2-ethyl-1-hexanol, 3-methyl-1-butanol, 2-methyl-1-butanol, 3-methylbutanal, 2-methylbutanal and some ethyl esters increased during storage, suggesting their potential as CSIs.

Age matters: the effects of volatile organic compounds emitted by Trichoderma atroviride on plant growth.

Studying the effects of microbial volatile organic compounds (VOCs) on plant growth is challenging because the production of volatiles depends on many environmental factors. Adding to this complexity, the method of volatile exposure itself can lead to different responses in plants and may account for some of the contrasting results. In this work, we present an improved experimental design, a plate-within-a-plate method, to study the effects of VOCs produced by filamentous fungi. We demonstrate that the plant growth response to VOCs is dependent on the age of the plant and fungal cultures. Plants exposed to volatiles emitted by 5-day-old Trichoderma atroviride for 14 days exhibited inhibition, while plants exposed to other exposure conditions had growth promotion or no significant change. Using GC-MS, we compared fungal volatile emission of 5-day-old and 14-day-old T. atroviride. As the fungi aged, a few compounds were no longer detected, but 24 new compounds were discovered.