Microbial Reduction Research Articles

Arsenic distribution characteristics and release mechanisms in aquaculture lake sediments

It is well known that aquaculture can alter the microenvironments of lakes at sediment-water interface (SWI). However, the main mechanisms underlying the effects of aquaculture activities on arsenic (As) transformations are still unclear. In this context, the present study aims to investigate the variations in the sediment As contents in Yangcheng Lake, as well as to assess its chemical transformations, release fluxes, and release mechanisms. The results showed substantial spatial differences in the dissolved As concentrations in the sediment pore water. The As release fluxes at the SWI ranged from 1.32 to 112.09 μg/L, with an average value of 33.68 μg/L. In addition, the highest As fluxes were observed in the aquaculture areas. The transformation of crystalline hydrous Fe oxide-bound As to adsorbed-As in the aquaculture lake sediments increased the ability of As release. The Partial least squares path modeling results demonstrated the great contributions of organic matter (OM) to the As transformations by influencing the sediment microbial communities and Fe/Mn minerals. The changes in the As fractionation and competing adsorption increased the dissolved As concentrations in the 0–10 mm surface sediment. Non-specifically and specifically adsorbed As were the major sources of dissolved As in the sediments. Specifically, microbial reduction of As[V] and dissolution of Fe oxides increased the dissolved As concentrations at the SWI (20 to −20 mm). The results of the current study highlight the positive enhancement effects of aquaculture on As release from sediments.

Applications of cold plasma technique to enhance the safety and quality of different food products

Cold plasma (CP) has emerged as a novel technology for food processing. Its uses have been expanded into the food industry globally as an effective non-thermal processing technique with various applications. CP treatment uses reactive species for microbial inactivation, mycotoxin degradation, enzyme inactivation, protein modification and hydrogenation. CP treatment improves the physiochemical properties of different food products and the antimicrobial properties of packaging films. This review article demonstrates the applications of CP treatment in different food industries. It also explains the mechanism of microbial reduction in food components by using CP. The plasma source and impact of CP on food quality and safety have been discussed. CP is a key technology to increase the shelf life of food products while enhancing their safety with minimal impact on their bioactive compounds.

Manganese reduction and associated microbial communities in Antarctic surface sediments.

The polar regions are the fastest warming places on earth. Accelerated glacial melting causes increased supply of nutrients such as metal oxides (i.e., iron and manganese oxides) into the surrounding environment, such as the marine sediments of Potter Cove, King George Island/Isla 25 de Mayo (West Antarctic Peninsula). Microbial manganese oxide reduction and the associated microbial communities are poorly understood in Antarctic sediments. Here, we investigated this process by geochemical measurements of in situ sediment pore water and by slurry incubation experiments which were accompanied by 16S rRNA sequencing. Members of the genus Desulfuromusa were the main responder to manganese oxide and acetate amendment in the incubations. Other organisms identified in relation to manganese and/or acetate utilization included Desulfuromonas, Sva1033 (family of Desulfuromonadales) and unclassified Arcobacteraceae. Our data show that distinct members of Desulfuromonadales are most active in organotrophic manganese reduction, thus providing strong evidence of their relevance in manganese reduction in permanently cold Antarctic sediments.

Microbial anabolic and catabolic utilization of hydrocarbons in deep subseafloor sediments of Guaymas Basin.

Guaymas Basin, located in the Gulf of California, is a hydrothermally active marginal basin. Due to steep geothermal gradients and localized heating by sill intrusions, microbial substrates like short-chain fatty acids and hydrocarbons are abiotically produced from sedimentary organic matter at comparatively shallow depths. We analyzed the effect of hydrocarbons on uptake of hydrocarbons by microorganisms via nano-scale secondary ion mass spectrometry (NanoSIMS) and microbial sulfate reduction rates (SRR), using samples from two drill sites sampled by IODP Expedition 385 (U1545C and U1546D). These sites are in close proximity of each other (ca. 1km) and have very similar sedimentology. Site U1546D experienced the intrusion of a sill that has since then thermally equilibrated with the surrounding sediment. Both sites currently have an identical geothermal gradient, despite their different thermal history. The localized heating by the sill led to thermal cracking of sedimentary organic matter and formation of potentially bioavailable organic substrates. There were low levels of hydrocarbon and nitrogen uptake in some samples from both sites, mostly in surficial samples. Hydrocarbon and methane additions stimulated SRR in near-seafloor samples from Site U1545C, while samples from Site U1546D reacted positively only on methane. Our data indicate the potential of microorganisms to metabolize hydrocarbons even in the deep subsurface of Guaymas Basin.

The Effect of Irradiation on Meat Products.

The effects of irradiation on meat constituents including water, proteins, and lipids are multifaceted. Irradiation leads to the decomposition of water molecules, resulting in the formation of free radicals that can have both positive and negative effects on meat quality and storage. Although irradiation reduces the number of microorganisms and extends the shelf life of meat by damaging microbial DNA and cell membranes, it can also accelerate the oxidation of lipids and proteins, particularly sulfur-containing amino acids and unsaturated fatty acids. With regard to proteins, irradiation affects both myofibrillar and sarcoplasmic proteins. Myofibrillar proteins, such as actin and myosin, can undergo depolymerization and fragmentation, thereby altering protein solubility and structure. Sarcoplasmic proteins, including myoglobin, undergo structural changes that can alter meat color. Collagen, which is crucial for meat toughness, can undergo an increase in solubility owing to irradiation-induced degradation. The lipid content and composition are also influenced by irradiation, with unsaturated fatty acids being particularly vulnerable to oxidation. This process can lead to changes in the lipid quality and the production of off-odors. However, the effects of irradiation on lipid oxidation may vary depending on factors such as irradiation dose and packaging method. In summary, while irradiation can have beneficial effects, such as microbial reduction and shelf-life extension, it can also lead to changes in meat properties that need to be carefully managed to maintain quality and consumer acceptability.

Exploration of plasma‐activated water (PAW) as a cleaning‐in‐place (CIP) solution for fouling removal and microbial reduction

AbstractThe rapid fouling and bacterial contamination of equipment, heat exchangers, and pipelines are major concerns in food manufacturing plants. The process of cleaning‐in‐place (CIP) in the food manufacturing industry involves hazardous chemicals such as sulfuric acid, chlorine, sodium hydroxide, and potassium hydroxide. This study aims to investigate the cleaning efficiency of a novel environment‐friendly solution, plasma‐activated water (PAW), for removing dairy and plant‐based fouling and for biofilm reduction. PAW was produced by exposing water to plasma, which is a partially ionized gas generated by applying electricity to air. PAW prepared in this study had a pH, electrical conductivity (EC), and oxidation–reduction potential (ORP) of 2.5 ± 0.1, 1170. 1 ± 202.2 μS/cm, and 589.0 ± 2.4 mV, respectively. Holding PAW at different temperatures (20–75°C) did not change pH, ORP, and EC significantly, while nitrite and nitrate concentrations in PAW did not show a consistent trend with temperature. The treatment time and temperature of PAW were optimized for cleaning fouled coupons (stainless‐steel type 304 and 316) using model fouling fluids (MFF) with dairy (whey) and plant‐based (oat) proteins using full‐factorial design. The optimized PAW combinations (15 min/75°C and 5 min/75°C) were found to be as effective for fouling removal as compared to CIP controls (conventional caustic and acid solutions). Optimized PAW also showed significant biofilm reduction of Listeria innocua on stainless‐steel coupons with/without fouling, with at least 4.4 log and 4.0 log reductions in L. innocua biofilms when attached to MFF‐whey and MFF‐oat, respectively.Practical applicationsPlasma‐activated water (PAW) can inactivate a wide spectrum of microorganisms on various food and food contact surfaces. We propose the use of environment‐friendly plasma‐activated water (PAW), which can be prepared on‐site and on‐demand for cleaning‐in‐place (CIP) operations in the food industry. The results of this study suggest the potential of PAW as a promising CIP alternative for cleaning and sanitizing surfaces soiled by fouling deposits in dairy and plant‐based industries.

Comparative Evaluation of Disinfection Protocols for Dental Impressions in Prosthodontics.

In prosthodontics, dental impressions are essential for creating precise dental restorations. However, these impressions are susceptible to microbial contamination, which can pose a risk of infection to patients. Consequently, effective disinfection methods are crucial to prevent postoperative infections. This study aims to evaluate the effectiveness of various disinfection techniques for dental impressions used in prosthodontics. A total of 148 poured dental impressions were randomized into three disinfection groups: immersed in 0.5% sodium hypochlorite, 2% glutaraldehyde, or 0.2% chlorhexidine solution. The bacterial contamination was evaluated by direct colony-forming unit (CFU) counting, while the dimensional accuracy and surface detail duplication of each resin sample were determined as physical properties. Data were analyzed using SPSSversion 23.0 (IBM Corp., Armonk, NY). Either analysis of variance (ANOVA) with the option for post-hoc or non-parametric tests was used to investigate and compare the efficacy of the better disinfection protocols where the p-value was considered significant if less than 0.05. Glutaraldehyde showed the lowest mean CFU count (2.5 log10 CFUs), followed by sodium hypochlorite (3.2 log10 CFUs) and chlorhexidine (3.5 log10 CFUs). All disinfection protocols were able to significantly reduce microbial contamination when compared with the control group (p < 0.05). The results of the physical property assessment demonstrated acceptable dimensional accuracy in all tested protocols, with slight differences recorded between them regarding the reproduction of surface detail. More specifically, the mean dimensional deviation was in the range between 0.02 and 0.04 mm, while scores for surface detail reproduction ranged from 2 to 4. The ANOVA results revealed significant differences in microbial contamination levels (F(2, 145) = 5.72, p = 0.007) and dimensional accuracy (F(2, 145) = 3.45, p = 0.032) between the various disinfection protocols. This study enlightens the effective sterilization protocol to be adopted in prosthodontics for dental impressions. Glutaraldehyde was most effective in microbial reduction, while sodium hypochlorite and chlorhexidine were equally effective. Therefore, clinicians must be vigilant in assessing the type of microbial flora that can be encountered during prosthodontic procedures while choosing disinfection protocols for patient safety and quality of impressions.

Exploring Efficacy and Safety: Comparative Evaluation of Different Irrigation Solutions in Root Canal Therapy at a Tertiary Care Setting.

In order to completely remove bacteria and debris from the root canal system, root canal treatment (RCT) calls for efficient irrigation methods. There is still a lack of research on the relative safety and efficacy of various irrigation systems in tertiary care settings. Patients receiving RCT at a tertiary care endodontic clinic were included in a prospective comparison research of 150 subjects. One of four irrigation solutions-sodium hypochlorite, chlorhexidine, ethylenediaminetetraacetic acid (EDTA), or a combination of the three-was given to patients at random. Following surgery, microbial decrease and patient-reported pain levels were evaluated. The analysis showed that there were significant differences (P < 0.05) in microbial decrease between the irrigation solution groups. EDTA, sodium hypochlorite, and chlorhexidine were the next three groups with the biggest mean log decrease in microbial counts, after the combination group. Nonetheless, there were no appreciable variations in the groups' patient-reported pain levels (P > 0.05). Our results imply that microbial reduction in RCT is highly influenced by the irrigation solution selection. Without having an impact on the pain sensations reported by the patients, the combination of irrigation solutions showed higher efficacy in microbial control. These findings highlight how crucial it is to choose an irrigation solution carefully in order to maximize endodontic outcomes in tertiary care settings.

Pyritic stromatolites from the Paleoarchean Dresser Formation, Pilbara Craton: Resolving biogenicity and hydrothermally influenced ecosystem dynamics.

This study investigates the paleobiological significance of pyritic stromatolites from the 3.48 billion-year-old Dresser Formation, Pilbara Craton. By combining paleoenvironmental analyses with observations from well-preserved stromatolites in newly obtained drill cores, the research reveals stratiform and columnar to domal pyritic structures with wavy to wrinkly laminations and crest thickening, hosted within facies variably influenced by syn-depositional hydrothermal activity. The columnar and domal stromatolites occur in strata with clearly distinguishable primary depositional textures. Mineralogical variability and fine-scale interference textures between the microbialites and the enclosing sediment highlight interplays between microbial and depositional processes. The stromatolites consist of organomineralization - nanoporous pyrite and microspherulitic barite - hosting significant thermally mature organic matter (OM). This includes filamentous organic microstructures encased within nanoporous pyrite, resembling the extracellular polymeric substance (EPS) of microbes. These findings imply biogenicity and support the activity of microbial life in a volcano-sedimentary environment with hydrothermal activity and evaporative cycles. Coupled changes in stromatolite morphology and host facies suggest growth in diverse niches, from dynamic, hydrothermally influenced shallow-water environments to restricted brine pools strongly enriched in from seawater and hydrothermal activity. These observations, along with S stable isotope data indicating influence by S metabolisms, and accumulations of biologically significant metals and metalloids (Ni and As) within the microbialites, help constrain microbial processes. Columnar to domal stromatolites in dynamic, hydrothermally influenced shallow water deposits likely formed by microbial communities dominated by phototrophs. Stratiform pyritic structures within barite-rich strata may reflect the prevalence of chemotrophs near hydrothermal venting, where hydrothermal activity and microbial processes influenced barite precipitation. Rapid pyrite precipitation, a putative taphonomic process for preserving microbial remnants, is attributed to microbial sulfate reduction and reduced S sourced from hydrothermal activity. In conclusion, this research underscores the biogenicity of the Dresser stromatolites and advances our understanding of microbial ecosystems in Earth's early history.

Sustained Microbial Burden Reduction and Impact on Covid19 Cases in Long-Term Care Facility through Advanced Photocatalysis

Background: COVID19 remains deadly to Americans over 75 years old despite vaccination and additional infection control practices in long term care (LTC). The evolution of more transmissible COVID19 variants and continued viral aerosols result in persistent COVID19 outbreaks in LTC during high community levels of COVID19. Despite the end of pandemic Federal support and the continued vulnerability of elderly to the virus, LTC facilities remain dedicated to protecting this vulnerable population. The study hypothesized that utilization of continuous, facility-wide, advanced photocatalysis (AP) disinfection technology will reduce microbial burden in air and on surfaces, demonstrating a decrease in infectious aerosols and subsequent COVID19 cases among residents and workers. Methods: A prospective facility controlled experimental study was performed in skilled nursing facilities in Pennsylvania and New Jersey from January 2023 to April 2023 to surveil aerobic bacterial and fungal colony forming units (CFUs) in air, and Methicillin-resistant Staphylococcus aureus (MRSA) and fungal CFUs on surfaces and floors prior to and post AP technology installation. Impacts on resident COVID19 cases were recorded and compared to the same extended observation period (February-July 2023) one year prior (2022) with similar year over year community COVID19 rates. In addition, two matched control centers in regional proximity to the intervention facility were also prospectively studied. A one-way analysis of variance (ANOVA) was used to analyze mean microbial burdens after each post activation period (significance p &lt;.05). Results: From baseline to final testing, the intervention facility surface testing showed a 93% reduction in mean aerobic bacterial CFUs (p=.002); 96% reduction in mean fungal CFUs (p&lt;.001); 97% reduction in mean MRSA CFUs (p&lt;.001). Floor testing also showed reductions in mean CFUs for aerobic bacteria by 92% (p&lt;.001); 96% for fungi (p&lt;.001); 99% for MRSA (p&lt;.001). Air testing showed reductions in mean CFUs for aerobic bacteria by 87% (p=.005); 36% for fungal (p=.005). The intervention facility observed a 94% reduction in resident COVID19 cases compared to the matched control facilities that increased 46% during the 2023 time period (Figure 1). Conclusion: This study is on the pioneering edge of demonstrating that continuous and persistent disinfection technology reduces contaminant reservoirs on surfaces, floors, and air and clearly decreases infectious aerosols and improves resident outcomes by dramatically reducing COVID19 transmission in LTC facilities.

Dual clumped isotopes (Δ47 and Δ48) reveal non-equilibrium formation of freshwater cements

Low-Mg calcite, precipitating from meteoric fluids, is a common mineral that forms in a variety of near-surface diagenetic environments. However, recent studies, based on a combination of analyses of δ18O and Δ47 values, have suggested that this mineral might form in disequilibrium and consequently yield kinetic bias in Δ47-derived temperatures and fluid δ18O values. Here, we use dual clumped isotope proxies (Δ47 and Δ48) to investigate the influence of kinetic isotope effects within different meteoric diagenetic zones of Holocene and Pleistocene carbonates from the southern Florida and the Dominican Republic. In the Miami Oolite, the primary aragonite ooids and secondary low-Mg calcite cements in the bulk sample were separated from each other and their isotopic compositions (δ13C, δ18O, Δ47 and Δ48 values) were measured. The Δ47 and Δ48 values of the separated aragonite are consistent with the modern ooid sediments and in approximate equilibrium with the surface seawater. In contrast, the low-Mg calcite cement shows the higher Δ48 and lower Δ47 values, than expected, with the disequilibrium arising as a result of CO2 degassing in the vadose zone. Such deviations of Δ47 and Δ48 values are also observed in low-Mg calcite vadose cements in the Dominican Republic. While low-Mg calcites formed in the lower freshwater phreatic zone in the Dominican Republic have the Δ47- and Δ48-derived temperatures close to expected, the same mineral forming near the water-table and upper phreatic zone shows much higher Δ48-derived temperatures (up to ∼ 90 °C). The possible origin of such elevated temperatures can be attributed to non-equilibrium processes caused by changes in pH and pCO2, mediated by microbial sulfate reduction. Such differential kinetic behavior of Δ48 values between vadose and phreatic zones could be used as a proxy marker for the presence and the location of a water-table. This study demonstrates the great potential of dual clumped isotopes in the investigation of meteoric diagenesis and will help understand the alteration of ancient sequences and the interpretation of stable C isotope trends that they contain.

Microbial Sulfate Reduction and Its Role in Carbon Sequestration in Marine Sediments

Microbial Sulfate Reduction and Its Role in Carbon Sequestration in Marine Sediments

Using Mercury Stable Isotopes to Quantify Directional Soil-Atmosphere Hg(0) Exchanges in Rice Paddy Ecosystems: Implications for Hg(0) Emissions to the Atmosphere from Land Surfaces.

Gaseous elemental mercury [Hg(0)] emissions from soils constitute a large fraction of global total Hg(0) emissions. Existing studies do not distinguish biotic- and abiotic-mediated emissions and focus only on photoreduction mediated emissions, resulting in an underestimation of soil Hg(0) emissions into the atmosphere. In this study, directional mercury (Hg) reduction pathways in paddy soils were identified using Hg isotopes. Results showed significantly different isotopic compositions of Hg(0) between those produced from photoreduction (δ202Hg = -0.80 ± 0.67‰, Δ199Hg = -0.38 ± 0.18‰), microbial reduction (δ202Hg = -2.18 ± 0.25‰, Δ199Hg = 0.29 ± 0.38‰), and abiotic dark reduction (δ202Hg = -2.31 ± 0.25‰, Δ199Hg = 0.50 ± 0.22‰). Hg(0) exchange fluxes between the atmosphere and the paddy soils were dominated by emissions, with the average flux ranging from 2.2 ± 5.7 to 16.8 ± 21.7 ng m-2 h-1 during different sampling periods. Using an isotopic signature-based ternary mixing model, we revealed that photoreduction is the most important contributor to Hg(0) emissions from paddy soils. Albeit lower, microbial and abiotic dark reduction contributed up to 36 ± 22 and 25 ± 15%, respectively, to Hg(0) emissions on the 110th day. These novel findings can help improve future estimation of soil Hg(0) emissions from rice paddy ecosystems, which involve complex biotic-, abiotic-, and photoreduction processes.

Sulfidation of Cd-Sch during the microbial sulfate reduction: Nanoscale redistribution of Cd

Schwertmannite (Sch) is found in environments abundant in iron and sulfate. Microorganisms that utilize iron or sulfate can induce the phase transition of Schwertmannite, consequently leading to the redistribution of coexisting pollutants. However, the impact of the molar ratio of sulfate to iron (S/Fe) on the microbial-mediated transformation of Schwertmannite and its implications for the fate of cadmium (Cd) have not been elucidated. In this study, we examined how S/Fe influenced mineral transformation and the fate of Cd during microbial reduction of Cd-loaded Schwertmannite by Desulfovibrio vulgaris. Our findings revealed that an increase in the S/Fe ratio facilitated sulfate-reducing bacteria (SRB) in mitigating the toxicity of Cd, thereby expediting the generation of sulfide (S(-II)) and subsequently triggering mineral phase transformation. As the S/Fe ratio increased, the predominant minerals in the system transitioned from prismatic-cluster vivianite to rose-shaped mackinawite. The Cd phase and distribution underwent corresponding alterations. Cd primarily existed in its oxidizable state, with its distribution being directly linked not only to FeS content but also showing a robust correlation with phosphorus. The coexistence of vivianite and FeS minerals proved to be more favorable for Cd immobilization. These findings have significant implications for understanding the biogeochemistry of iron (oxyhydr)oxides and Cd fate in anaerobic environments.

The pH-dependent role of different manganese oxides in the fate of arsenic during microbial reduction of arsenate-bearing goethite

Manganese oxides reduce arsenic (As) toxicity by promoting aqueous-phase As(III) oxidation and immobilization in natural aquatic ecosystems. In anaerobic water-sediment systems, arsenic exists both in a free state in the liquid phase and in an adsorbed state on iron (Fe) minerals. However, the influence of different manganese oxides on the fate of As in this system remains unclear. Therefore, in this study, we constructed an anaerobic microbial As(V) reduction environment and investigated the effects of three different manganese oxides on the fate of both aqueous-phase and goethite-adsorbed As under different pH conditions. The results showed that δ-MnO2 had a superior As(III) oxidation ability in both aqueous and solid phase due not only to the higher SSA, but also to its wrinkled crystalline morphology, less favorable structure for bacterial reduction, structure conducive to ion exchange, and less interference caused by the formation of secondary Fe-minerals compared to α-MnO2 and γ-MnO2. Regarding aqueous-phase As, δ-MnO2, α-MnO2, and γ-MnO2 required an alkaline condition (pH 9) to exhibit their strongest As(III) oxidation and immobilization capability. For goethite-adsorbed As, under microbial-reducing conditions, all manganese oxides had the highest As immobilization effect in neutral pH environments and the strongest As oxidation effect in alkaline environments. This was because at pH 7, Fe(II) and Mn(II) formed hydrated complexes, which was more favorable for As adsorption. At pH 9, the negatively charged state of goethite hindered As adsorption but promoted the adsorption and oxidation of As by the manganese oxides. Our research offers new insights for optimizing As removal from water using various manganese oxides and for controlling the mobilization of As in water-sediment system under different pH conditions.

Plasma-Activated Tap Water with Oxidative Potential Has an Inactivating Effect on Microbiological Contaminants in Aqueous Suspensions.

Plasma-activated water (PAW) generated from tap water has gained attention as a disinfectant when used directly in its pure form. Little is known about the application of PAW for bacterial inactivation in aqueous environments because its use in fluids results in dilutions. We investigated the effect of PAW in aqueous suspensions simulating such dilutions, and we focused on the minimal addition of PAW volumes to bacterial aqueous suspensions still resulting in high inactivation rates. The antimicrobial effect was highly dependent on the activation of PAW. An increase in activation power from 90 to 100 W resulted in a greater microbial reduction with an identical 10 min activation time. The susceptibility to PAW dilutions was analyzed in detail regarding nine Gram-negative species out of Enterobacterales and other waterborne microorganisms as well as four Gram-positive species present in two different matrices, in saline and in tap water, at high concentrations simulating massive contamination situations. For this purpose, the PAW activation setting of 90 W and 30 min was defined in order to be able to differentiate the limitations of inactivation in individual bacterial species. The Gram-negatives in saline demonstrated susceptibility when one volume unit of PAW was added. However, twice the PAW volume was necessary for inactivation when bacteria were present in tap water. Gram-positive microorganisms were more robust, indicated by prolonged contact times before inactivation. Our results indicate that PAW can be used for bacterial decontamination processes in aqueous environments when added in surplus. Optimized activation settings such as electric power to generate PAW and the contact times to the samples increase the effect of the inactivation a wide range of bacteria, regardless of their resistance profiles.

Organic fertilization reduces nitrous oxide emission by altering nitrogen cycling microbial guilds favouring complete denitrification at soil aggregate scale

Agricultural management practices can induce changes in soil aggregation structure that alter the microbial nitrous oxide (N2O) production and reduction processes occurring at the microscale, leading to large-scale consequences for N2O emissions. However, the mechanistic understanding of how organic fertilization affects these context-dependent small-scale N2O emissions and associated key nitrogen (N) cycling microbial communities is lacking. Here, denitrification gas (N2O, N2) and potential denitrification capacity N2O/(N2O + N2) were assessed by automated gas chromatography in different soil aggregates (>2 mm, 2–0.25 and <0.25 mm), while associated microbial communities were assessed by sequencing and qPCR of N2O-producing (nirK and nirS) and reducing (nosZ clade I and II) genes. The results indicated that organic fertilization reduced N2O emissions by enhancing the conversion of N2O to N2 in all aggregate sizes. Moreover, potential N2O production and reduction hotspots occurred in smaller soil aggregates, with the degree depending on organic fertilizer type and application rate. Further, significantly higher abundance and diversity of nosZ clades relative to nirK and nirS revealed complete denitrification promoted through selection of denitrifying communities at microscales favouring N2O reduction. Communities associated with high and low emission treatments form modules with specific sequence types which may be diagnostic of emission levels. Taken together, these findings suggest that organic fertilizers reduced N2O emissions through influencing soil factors and patterns of niche partitioning between N2O-producing and reducing communities within soil aggregates, and selection for communities that overall are more likely to consume than emit N2O. These findings are helpful in strengthening the ability to predict N2O emissions from agricultural soils under organic fertilization as well as contributing to the development of net-zero carbon strategies for sustainable agriculture.

UV-C light-activated gallic acid and ultrasound: A novel approach for reducing enteropathogens inoculated in lettuce (Lactuca sativa L.)

The effect of UV-C light-activated gallic acid (AGA) alone or combined with ultrasound (US) on the inactivation of E. coli and S. Typhimurium inoculated in aqueous solution and lettuce was studied. The contact time (0–30 min) and AGA concentration (0.05–0.25 M) were evaluated against microorganisms inoculated in aqueous solutions. At selected conditions, the combined effect of AGA and US process was evaluated against microorganisms inoculated in lettuce leaves; samples were taken from washing peptone water and the surface of lettuce using a cotton swab. The microbial inactivation of AGA in lettuce was described using the Monod model, which adequately reproduces the inactivation kinetics (R > 0.96). In aqueous solutions, 10 min of contact time and 0.15 M and 0.25 M of AGA were required to reduce more than 5 log reduction of S. Typhimurium and E. coli, respectively. In lettuce, the E. coli showed higher resistance than S. Typhimurium to the AGA treatment, obtaining a maximum microbial reduction (4.33 ± 0.17 log reduction) using washing peptone water as a sampling method and AGA plus US process. Moreover, the AGA treatment combined with the US process presented a higher microbial inactivation compared to a common disinfectant (colloidal silver). Therefore, it is possible to indicate that AGA combined with the US may be an adequate alternative to reduce enteropathogens in lettuce.

Tracing the evolution of the world's first mined bauxite from palaeotopography to pyritization: Insights from Minjera deposits, Istria, Croatia

The Minjera bauxites are the first analysed and mined bauxites in the world. They are a group of pyritised bauxites situated in northern Istria, developed during the subaerial exposure phase which marked a major part of the Late Cretaceous and Palaeocene in northern Istria. In this study, the morphology, petrography, mineralogy, geochemistry as well as stable sulphur isotopes of the D-1 and D-15 deposits from Minjera were studied, as well as the evolution of their bedrock and cover. This study found that those two deposits differ in morphology, mineralogy and geochemistry as a consequence of their different palaeotopographical positions, with the D-1 deposit located at a higher position at the time of its formation compared to D-15, which led to the higher degree of leaching and desilicification in the D-1 deposit. The pyritisation in the studied deposits was a multi-phase process, which began with the deposition of framboidal pyrite and micrometre-sized anhedral pyrite, over which colloform pyrite was precipitated. This indicates that the solutions were initially supersaturated with iron sulphide, saturation of which subsequently changed, as finally euhedral, dendritic and acicular pyrite were deposited, indicating undersaturated conditions. The final stage was marked by deposition of pyrite veins. This formational sequence of pyrites is also supported by stable sulphur isotopes, as the δ34S values exhibit a wide range from -40.86 to 2.32 ‰, where lower values indicate an open system with an unrestricted sulphate supply in which supersaturated conditions could have been achieved, while the higher values indicate a change towards a closed system with limited sulphate supply. The organic matter necessary for microbial sulphate reduction was derived from the marshy environment established atop of the bauxite. The initial flooding started in the Palaeocene, with the first part of the sequence being deposited under lacustrine conditions, which changed towards fully marine with the deposition of Foraminiferal limestones.

Mechanisms behind high N2O emissions from livestock enclosures in Kenya revealed by dual-isotope and functional gene analyses

Livestock manure contributes to global warming due to greenhouse gas (GHG) emissions, especially nitrous oxide (N2O) and methane (CH4). In the arid and semi-arid lands of Sub-Saharan Africa (SSA), extensive pastoral grazing systems are common, with cattle grazing in the savanna during the day and kept in enclosures (called bomas in Kenya) during the night. Manure is usually not removed from bomas but left to accumulate, leading to excessive local nitrogen loads, making these bomas an overlooked N2O emission hotspot in SSA that is currently not accounted for in national and regional GHG budgets. Here, we present the first in-situ isotope measurements of N2O fluxes from 37 cattle bomas along an age gradient ranging from 0 to 5 years after boma abandonment in Kenya along with functional gene analysis of soil and manure samples. The isotopic composition of the emitted N2O from bomas suggests that on average 91 ± 8% N2O was produced via bacterial denitrification and/or nitrifier denitrification, with little variation across boma age class. We also found high levels of N2O reduction to N2 across all sample sites (81 ± 9%), indicating high levels of N2O consumption. The abundances of denitrification-related genes (nirK and narG) were significantly higher than those of nitrification-related genes (amoA: AOA and AOB) in the cattle manure samples taken from the bomas, corroborating N2O emissions largely being attributed to denitrification. Significant abundance of the reduction-related gene (nosZ) also corroborated the high potential for microbial N2O reduction in bomas. Thus, by combining dual-isotope and functional gene analysis, we were able to identify source processes that govern N2O emissions from these systems. More generally, making use of the manure by spreading it in the vicinity of the bomas or on dedicated forage plots could provide a win-win by enhancing savanna productivity while simultaneously mitigating GHG emissions.