Microbial Predators Research Articles

New Lineage of Microbial Predators Adds Complexity to Reconstructing the Evolutionary Origin of Animals

The origin of animals is one of the most intensely studied evolutionary events, and our understanding of this transition was greatly advanced by analyses of unicellular relatives of animals, which have shown many "animal-specific" genes actually arose in protistan ancestors long before the emergence of animals [1-3]. These genes have complex distributions, and the protists have diverse lifestyles, so understanding their evolutionary significance requires both a robust phylogeny of animal relatives and a detailed understanding of their biology [4, 5]. But discoveries of new animal-related lineages are rare and historically biased to bacteriovores and parasites. Here, we characterize the morphology and transcriptome content of a new animal-related lineage, predatory flagellate Tunicaraptor unikontum. Tunicaraptor is an extremely small (3-5μm) and morphologically simple cell superficially resembling some fungal zoospores, but it survives by preying on other eukaryotes, possibly using a dedicated but transient "mouth," which is unique for unicellular opisthokonts. The Tunicaraptor transcriptome encodes a full complement of flagellar genes and the flagella-associated calcium channel, which is only common to predatory animal relatives and missing in microbial parasites and grazers. Tunicaraptor also encodes several major classes of animal cell adhesion molecules, as well as transcription factors and homologs of proteins involved in neurodevelopment that have not been found in other animal-related lineages. Phylogenomics, including Tunicaraptor, challenges the existing framework used to reconstruct the evolution of animal-specific genes and emphasizes that the diversity of animal-related lineages may be better understood only once the smaller, more inconspicuous animal-related lineages are better studied. VIDEO ABSTRACT.

Susceptibility and resilience of the soil ciliate community to high temperatures

ABSTRACT Ciliates play important ecological roles as microbial predators in soil. Although arable soils can experience a wide range of temperatures caused by agricultural land management, the effect of temperature on soil ciliates has been poorly documented, particularly for high temperatures over 30°C. Here, we studied the response of the soil ciliate community to different temperatures in comparison with that of the bacterial and fungal communities. Soils collected from a greenhouse were supplemented with organic fertilizer and incubated at different temperatures (10–60°C). Ciliate trophozoites were detected in the pore water of the soils incubated at 20°C and 10°C, while no trophozoites were observed at temperatures of 30°C and higher. The diversity of the ciliate community represented by fingerprints of denaturing gradient gel electrophoresis (DGGE) also decreased at temperatures higher than 20°C. A few DGGE bands were exclusively dominated at 40°C. The ciliate community composition in the soil incubated at 40°C recovered after subsequent incubation at 20°C, suggesting the resilience of the ciliate community to heat stress. Such recovery was not observed in the soil incubated at 60°C, probably because of the lethal effect on most soil ciliates. The responses of the ciliate community to temperature were similar to those of the fungal community, while the bacterial community showed higher resistance and resilience than the ciliate and fungal communities. The results suggested that temperature is an important factor controlling the ciliate community and affects the structure and functions of the soil microbial food web.

Microbe Profile: Cryptococcus neoformans species complex.

Cryptococcus neoformans is a lethal fungus disguised in a polysaccharide coat. It can remain dormant in the host for decades prior to reactivation, causing systemic cryptococcosis in humans and other mammals. Cryptococcus deploys a multitude of traits to adapt to and survive within the host, including immunosuppression, an ability to replicate intra- and extra-cellularly in phagocytes, changes in morphology and ploidy, a predilection to infect the CNS, and the capacity to utilize neurotransmitters and unique carbon sources available in the brain. These pathogenic strategies displayed by this fungus might have evolved through its interactions with microbial predators in the environment.

Fertilization changes soil microbiome functioning, especially phagotrophic protists

The soil microbiome determines crop production and drives nutrient cycling, functions that are altered by fertilization. Yet, we have only begun to understand the effects of fertilization on taxonomic changes on soil microorganisms, while impacts on functional groups across the microbiome and therefore potential soil functioning have never been assessed. Here, using a range of methods including high-throughput sequencing, we identified 77 functional parameters of the main microbiome groups including bacteria, fungi, and protists in three common agricultural soil types in China (black, fluvo-aquic, and red soil), which were fertilized in the same way over two years. We show that fertilization most strongly and generally throughout soil types reduced the relative abundance of the main microbial predators, phagotrophic protists, by 31%. Ten functional groups within the microbiome showed soil type-specific responses to fertilization. For example, ammonia-oxidizing bacteria, and predatory/exoparasitic bacteria were reduced by fertilization in the acidic black and the red soils, while, no other microbial functional group than phagotrophic protists was suppressed by fertilization in the alkaline fluvo-aquic soil. The significant reductions in microbial functional groups especially in acidic soils could be explained by nitrogen enrichment, increased soil acidification and potential biotic links between the functional groups within the microbiome. Together, we show that the fertilization-induced abiotic changes alter microbial functions that depend on the soil and environmental conditions. Particularly the most profound changes on the group of microbial predators might subsequently affect other soil functions performed by bacteria and fungi.

Natural diversity in the predatory behavior facilitates the establishment of a robust model strain for nematode-trapping fungi

Nematode-trapping fungi (NTF) are a group of specialized microbial predators that consume nematodes when food sources are limited. Predation is initiated when conserved nematode ascaroside pheromones are sensed, followed by the development of complex trapping devices. To gain insights into the coevolution of this interkingdom predator-prey relationship, we investigated natural populations of nematodes and NTF that we found to be ubiquitous in soils. Arthrobotrys species were sympatric with various nematode species and behaved as generalist predators. The ability to sense prey among wild isolates of Arthrobotrys oligospora varied greatly, as determined by the number of traps after exposure to Caenorhabditis elegans While some strains were highly sensitive to C. elegans and the nematode pheromone ascarosides, others responded only weakly. Furthermore, strains that were highly sensitive to the nematode prey also developed traps faster. The polymorphic nature of trap formation correlated with competency in prey killing, as well as with the phylogeny of A. oligospora natural strains, calculated after assembly and annotation of the genomes of 20 isolates. A chromosome-level genome assembly and annotation were established for one of the most sensitive wild isolates, and deletion of the only G-protein β-subunit-encoding gene of A. oligospora nearly abolished trap formation. In summary, our study establishes a highly responsive A. oligospora wild isolate as a model strain for the study of fungus-nematode interactions and demonstrates that trap formation is a fitness character in generalist predators of the nematode-trapping fungus family.

Application of Constructivist Teaching Approach in Introducing New Environmental Concepts to Young Elementary Students in the Philippines: A Small Class Sized Experience from Slime Moulds Modeling

The traditional elementary science education setting in the Philippines mainly focuses on using macro-organisms as a biological model. To introduce the fundamental environmental concepts of microbial predation and other related environmental concepts such as decomposition, nutrient cycling and species interaction to the young elementary Filipino students, an initial pilot study was conducted in a small class-sized setting of one international school in the Philippines. Our goal was to (i) design an activity-based teaching program utilizing the constructivist 5E (engage, explore, explain, elaborate and evaluate) method using solely slime moulds as an example organism and (ii) obtain the impression of the students regarding the activity-based teaching program. A purposive sampling size with a total of 45 number of students aging from 10-12 years old were divided into control (16) and experimental (29) groups. Likert scale survey was also given to the student experimental group to assess their overall impression about the newly developed teaching program. Significant differences on test scores between the control and experimental group and the high priority mean scores given by the experimental group points out the effective facilitation of the program. Hence, innovations in teaching pedagogies for difficult science concepts such as the development of the Slimy Business teaching program improves not only the learning quality of the young learners but as well as their environmental appreciation. Applying such novel teaching approach in the conservative Philippine elementary schools is recommended.

A survey of non-coding RNAs in the social and predatory myxobacterium Myxococcus xanthus DK1622.

Prokaryotic ncRNAs are important regulators of gene expression, and can be involved in complex signalling networks. The myxobacteria are model organisms for studies into multicellular development and microbial predation, being particularly renowned for their large genomes and exceptionally sophisticated signalling networks. However, apart from two specific examples, little is known about their regulatory ncRNAs. Here, we integrate bioinformatic predictions and transcriptome sequence data to provide a comprehensive survey of the ncRNAs made by the exemplar myxobacterium M. xanthus DK1622. M. xanthus RNA-seq data from four experimental conditions was interrogated to identify transcripts mapping outside coding sequences and to known ncRNAs. The resulting 37 ncRNAs were clustered on the genome and most (30/37) were conserved across the myxobacteria. A majority of ncRNAs (22/37) were intergenic, while 13 were at least partially antisense to protein-coding genes. Predicted promoter and terminator sequences explained the start/stop sites of 18 ncRNAs. mRNA targets for the ncRNAs were predicted, including plausible candidates for a known regulatory ncRNA. 22 ncRNAs were differentially expressed by nutrient availability and expression of 25 predicted targets was found to correlate strongly with that of their regulatory ncRNAs. Sharing of predicted mRNA targets by multiple ncRNAs suggests that some ncRNAs might regulate each other within signalling networks. This genomic survey of M. xanthus ncRNA biology provides a starting point for further studies of myxobacterial ncRNAs, which are likely to have important functions in these industrially important and sophisticated organisms.

New Lineage of Microbial Predators Adds Complexity to Reconstructing the Evolutionary Origin of Animals

The origin of animals is one of the most intensely studied evolutionary events, and our understanding of this transition was greatly advanced by analyses of unicellular protist relatives of animals, which have shown many “animal-specific” genes actually arose in protistan ancestors long before the emergence of animals. These genes have sometimes complex distributions and the protists have diverse lifestyles, so understanding their evolutionary significance requires both a robust phylogeny of animal relatives, and a detailed understanding of their biology. But discoveries of new animal-related lineages are rare and biased to bacteriovores and parasites. Here, we characterize the morphology, life cycle and transcriptome content of a new animal-related lineage, represented by the predatory flagellate, Tunicaraptor unikontum. Although it survives by preying on other eukaryotes, Tunicaraptor is an extremely small (3-5 μm) and morphologically simple cell; closely resembling some fungal zoospores. The Tunicaraptor transcriptome encodes a full complement of flagellar genes, which are only common to predatory animal relatives and missing in microbial parasites and grazers. Tunicaraptor also encodes several major classes of animal cell adhesion molecules and transcription factors and proteins involved in neurodevelopment that have not been found in other animal-related lineages. Phylogenomics including Tunicaraptor challenges the existing framework used to reconstruct the evolution of “animal specific” genes, and emphasizes that the diversity of animal-related lineages may be better understood only once the smaller, more inconspicuous animal-related lineages are better studied.

Multiple Independent Origins of Apicomplexan-Like Parasites.

The apicomplexans are a group of obligate animal pathogens that include Plasmodium (malaria), Toxoplasma (toxoplasmosis), and Cryptosporidium (cryptosporidiosis) [1]. They are an extremely diverse andspecious group but are nevertheless united bya distinctive suite of cytoskeletal and secretory structures related to infection, called the apical complex, which is used to recognize and gain entry into animal host cells. The apicomplexans are also known to have evolved from free-living photosyntheticancestors and retain a relict plastid (the apicoplast), whichis non-photosynthetic but houses a number of other essential metabolic pathways [2]. Their closest relatives include a mix of both photosynthetic algae (chromerids) and non-photosynthetic microbial predators (colpodellids) [3]. Genomic analyses of these free-living relatives have revealed a great deal about how the alga-parasite transition may have taken place, as well as origins of parasitismmore generally [4]. Here, we show that, despite the surprisingly complex origin of apicomplexans from algae, this transition actually occurred at least three times independently. Using single-cell genomics and transcriptomics from diverse uncultivated parasites, we find that two genera previously classified within the Apicomplexa, Piridium and Platyproteum, form separately branching lineages in phylogenomic analyses. Both retain cryptic plastids with genomic and metabolic features convergent with apicomplexans. These findings suggest a predilection in this lineage for both the convergent loss of photosynthesis and transition to parasitism, resulting in multiple lineages of superficially similar animal parasites.

Trophic Regulations of the Soil Microbiome.

The soil microbiome regulates vital ecosystem functions ranging from primary production to soil carbon sequestration. Yet, we have only begun to understand the factors regulating the soil microbiome. While the importance of abiotic factors is increasingly recognized, the roles of trophic regulations in driving the structure and function of the soil microbiome remain less explored. Here, we review the current understanding of how and when microbial and top predators of the soil shape the community structure and function of the soil microbiome via both direct and indirect effects. We finally highlight that the structure and function of the soil microbiome depend on the interactive effects among predation, plant inputs, and abiotic variables present in the soil.

Contrasting Controls on Microzooplankton Grazing and Viral Infection of Microbial Prey

The encounter and capture of bacteria and phytoplankton by microbial predators and parasites is fundamental to marine ecosystem organization and activity. Here, we combined biophysical models with published laboratory measurements to infer functional traits, including encounter kernel and capture efficiency, for a wide range of marine viruses and microzooplankton grazers. Despite virus particles being orders of magnitude smaller than microzooplankton grazers, virus encounter kernels and adsorption rates were in many cases comparable in magnitude to grazer encounter kernel and clearance, pointing to Brownian motion as a highly effective method of transport for viruses. Inferred virus adsorption efficiency covered many orders of magnitude, but the median virus adsorption efficiency was between 5 to 25% depending on the assumed host swimming speed. Uncertainty on predator detection area and swimming speed prevented robust inference of grazer capture efficiency, but sensitivity analysis was used to identify bounds on unconstrained processes. These results provide a common functional trait framework for understanding marine host-virus and predator-prey interactions, and highlight the value of theory for interpreting measured life-history traits.

Is "Wolf-Pack" Predation by Antimicrobial Bacteria Cooperative? Cell Behaviour and Predatory Mechanisms Indicate Profound Selfishness, Even when Working Alongside Kin.

For decades, myxobacteria have been spotlighted as exemplars of social "wolf-pack" predation, communally secreting antimicrobial substances into the shared public milieu. This behavior has been described as cooperative, becoming more efficient if performed by more cells. However, laboratory evidence for cooperativity is limited and of little relevance to predation in a natural setting. In contrast, there is accumulating evidence for predatory mechanisms promoting "selfish" behavior during predation, which together with conflicting definitions of cooperativity, casts doubt on whether microbial "wolf-pack" predation really is cooperative. Here, it is hypothesized that public-goods-mediated predation is not cooperative, and it is argued that a holistic model of microbial predation is needed, accounting for predator and prey relatedness, social phenotypes, spatial organization, activity/specificity/transport of secreted toxins, and prey resistance mechanisms. Filling such gaps in our knowledge is vital if the evolutionary benefits of potentially costly microbial behaviors mediated by public goods are to be properly understood.

An Integrated Approach to Lysis-Cryptic Growth (Sludge Ozonation) and Sequencing Batch Reactor Coupled to an Anaerobic Side-Stream Reactor (SBR-ASSR): Performance and Characteristics

ABSTRACTAnaerobic side-stream reactors (ASSR) have been suggested to reduce waste activated sludge volumes benefiting from relatively low capital/operation costs and design simplicity. In this study, an evaluation of the feasibility of combining the ASSR system with the lysis-cryptic growth (ozonation) process was made so that a part of the sludge which passed through the ASSR anaerobic tank would be then treated by ozonation before returned to the aeration tank. The main independent factor was the ozonation flowrate (OFR), which is defined as the percent of return sludge which passed through the both the anaerobic tank and the ozonation unit. Three systems were studied, an ASSR control without ozonation (OFR-0), a combined ASSR with ozonation designated as OFR-2.5 (anaerobic interchange rate [AIR] of 10% per day and 25% of the exchanged sludge being ozonated [ozone interchange rate or OIR]), and OFR-3.1 (AIR = 12.5%, OIR = 25%). The results revealed that the insertion of an ozonation step led to an enhanced total microbial activity, eukaryotic population, and nitrogen removal. The linear relationship between the observed yield and the specific oxygen uptake rate indicated that microbial predation was the major relevant mechanism for the enhanced sludge reduction. The results of measurements of particle size distribution, and sludge dewaterability rates suggest that additional studies are needed to better understand and optimize this system.

PAS Domain Protein Pas3 Interacts with the Chromatin Modifier Bre1 in Regulating Cryptococcal Morphogenesis.

Switching between different morphotypes is an adaptive cellular response in many microbes. In Cryptococcus neoformans, the yeast-to-hypha transition confers resistance to microbial predation in the soil and is an integral part of its life cycle. Morphogenesis is also known to be associated with virulence, with the filamentous form being immune-stimulatory and protective in mammalian models of cryptococcosis. Previous studies identified the transcription factor Znf2 as a master regulator of cryptococcal filamentation. However, the upstream regulators of Znf2 remain largely unknown. PAS domain proteins have long been recognized as transducers of diverse environmental signals. Here, we identified a PAS domain protein Pas3 as an upstream regulator of Znf2. Surprisingly, this small Pas3 protein lacks a nuclear localization signal but is enriched in the nucleus where it regulates the transcript level of ZNF2 and its prominent downstream targets. We discovered that the PAS domain is essential for Pas3's nuclear enrichment and function. Intriguingly, Pas3 interacts with Bre1, which is required for Cryptococcus histone H2B monoubiquitination (H2Bub1) and H3 lysine 4 dimethylation (H3K4me2), two histone modifications known to be associated with active gene transcription. Indeed, Bre1 functions together with Pas3 in regulating cryptococcal filamentation based on loss-of-function, epistasis, and transcriptome analysis. These findings provide the first evidence of a signaling regulator acting with a chromatin modifier to control cryptococcal filamentation.IMPORTANCE For the ubiquitous environmental pathogen Cryptococcus neoformans, the morphological transition from yeast to filament confers resistance to natural predators like soil amoeba and is an integral differentiation event to produce infectious spores. Interestingly, filamentation is immuno-stimulatory and attenuates cryptococcal virulence in a mammalian host. Consistently, the morphogenesis transcription factor Znf2 profoundly shapes cryptococcal interaction with various hosts. Identifying the signaling pathways activating filamentation is thus, conductive to a better understanding of cryptococcal biology. In this study, we identified a PAS domain protein Pas3 that functions upstream of Znf2 in regulating cryptococcal filamentation. Interestingly, Pas3 interacts with the chromatin modifier Bre1 in the nucleus to regulate the transcript level of Znf2 and its prominent downstream targets. This is the first example of a PAS domain signaling regulator interacting with a chromatin modifier to control filamentation through their impact on cryptococcal transcriptome.

DNA extraction from amoebal isolates and genotype determination of Acanthamoeba from tap water in Latvia.

Acanthamoeba are free-living amoebae found in various ecological environments, and they are major microbial predators. Some Acanthamoeba species can cause keratitis, granulomatous amoebic encephalitis, and infections of the organs. This is the first study in Latvia describing Acanthamoeba detection by molecular techniques and genotyping using tap water from different sources. An 18S rRNA gene investigation of the 20 Acanthamoeba isolates suggested that 19 belonged to the hazardous T4 genotype and one sample was T12. The results indicate that tap water in Latvia may be a source of Acanthamoeba that is potentially pathogenic to humans. All obtained sequences were submitted to the GenBank database under the following accession numbers: MG386295-MG386314.

Disruption of cell to cell communication in the aeration unit of a cannibal process: Sludge reduction efficiency and related mechanisms

The Cannibal process is a commercial method for excess sludge reduction in activated sludge plants with small sizes. However, the relatively low efficiency in sludge reduction (up to 50%) for some plants is the main impediment to its more widespread adoption. This study provides a biological method for upgrading Cannibal process. The suggested method includes disruption of cell to cell communication between bacterial communities in aerobic flocs in order to increase endogenous respiration. A quorum quenching (QQ) agent is applied in the aerobic tank in order to increase the free bacteria population, which leads to enhanced microbial predation and a decrease in extracellular polymeric substances. The sludge production yield (Yobs) of three pilots including a control sequencing batch reactor (SBR), a Cannibal system, and a QQ-Cannibal system was 0.5, 0.38, and 0.29, respectively. The results of a respirometery study also indicated that enhanced endogenous respiration caused sludge reduction in the QQ-Cannibal pilot system.

Preliminary investigation of quorum quenching effects on sludge quantity and quality of activated sludge process

The Quorum Sensing (QS) system has attracted the interest of researchers as a cell-cell communication system. In activated sludge processes, the production of extracellular polymeric substances (EPS), biofilms and floc formation are regulated by the QS system. Hence, disruption of the QS system, called Quorum Quenching (QQ), could have a significant effect on the quality and quantity of excess sludge. In the present research, the quorum quenching bacteria, Rhodococcus sp. BH4 was used as a quorum quencher and was entrapped in an alginate structure (QQ beads). Three separate sequential batch reactors (SBR) were constructed and operated as a control reactor, a Low-QQ reactor (containing 150 QQ beads), and a High-QQ reactor (containing 600 QQ beads). Results indicated that the presence of QQ beads in the aeration reactor leads to a decrease in EPS content and mean floc particle size in the both Low-QQ and High-QQ reactors. The eukaryotic community was changed significantly so that the QS disruption caused an enhancement in microbial predation. The presence of QQ beads also led to a 16 and a 26% decrease in the Yobs coefficient within the Low-QQ and High-QQ reactors, respectively. Findings of this research revealed a new application of the QQ system in the activated sludge process, but additional studies are needed.

Predator-prey mass ratio drives microbial activity under dry conditions in Sphagnum peatlands.

Mid‐ to high‐latitude peatlands are a major terrestrial carbon stock but become carbon sources during droughts, which are increasingly frequent as a result of climate warming. A critical question within this context is the sensitivity to drought of peatland microbial food webs. Microbiota drive key ecological and biogeochemical processes, but their response to drought is likely to impact these processes. Peatland food webs have, however, been little studied, especially the response of microbial predators. We studied the response of microbial predators (testate amoebae, ciliates, rotifers, and nematodes) living in Sphagnum moss carpet to droughts, and their influence on lower trophic levels and on related microbial enzyme activity. We assessed the impact of reduced water availability on microbial predators in two peatlands using experimental (Linje mire, Poland) and natural (Forbonnet mire, France) water level gradients, reflecting a sudden change in moisture regime (Linje), and a typically drier environment (Forbonnet). The sensitivity of different microbial groups to drought was size dependent; large sized microbiota such as testate amoebae declined most under dry conditions (−41% in Forbonnet and −80% in Linje). These shifts caused a decrease in the predator–prey mass ratio (PPMR). We related microbial enzymatic activity to PPMR; we found that a decrease in PPMR can have divergent effects on microbial enzymatic activity. In a community adapted to drier conditions, decreasing PPMR stimulated microbial enzyme activity, while in extreme drought experiment, it reduced microbial activity. These results suggest that microbial enzymatic activity resulting from food web structure is optimal only within a certain range of PPMR, and that different trophic mechanisms are involved in the response of peatlands to droughts. Our findings confirm the importance of large microbial consumers living at the surface of peatlands on the functioning of peatlands, and illustrate their value as early warning indicators of change.

Foraging association between myxomycetes and fungal communities on coarse woody debris

Myxomycetes are one of the major microbial predator groups found in detrital food webs within terrestrial ecosystems. They are typical inhabitants of coarse woody debris (CWD). However, the association between fungal communities and the foraging habits of myxomycetes has not been explored sufficiently in the field. Our study aimed to find community relationships between myxomycetes and fungi, a potential prey, on CWD, and the trophic status of saproxylic myxomycetes using stable isotope analysis of their sporocarps. Records of sporocarps present on 184 Pinus densiflora logs during a 3-year period listed 37 species of myxomycetes and 45 species of fungi. Ordination analysis using occurrence data of 34 dominant species (17 myxomycetes and 17 fungi) revealed their dynamic succession during log decay. Fungal dominants were clearly divided into two groups—earlier and later— and the majority of myxomycetes occurred during the middle stages of log decay between the first and second groups of fungal dominants. Species level associations between fungal and myxomycetes communities were rare. Isotopic nitrogen (δ15N) values of myxomycetes were significantly higher than those of wood-decay fungi, but few myxomycetes showed δ15N values higher than those of ectomycorrhizal fungi. Isotopic carbon (δ13C) values of myxomycetes were not significantly different from those of fungi. δ15N values of myxomycetes and fungi and δ13C of myxomycetes significantly increased with an increase in wood decay. However, these positive correlations between stable isotope profiles and wood decay disappeared after the values were calibrated by subtracting the δ15N and δ13C values of sapwood from those of myxomycetes and fungi. While saproxylic myxomycetes have long been assumed to be bacterivous, the results of this study suggest that wood-decay fungi could be an important part of their diet, and their foraging associations might be non-species specific.

The Role of Bacterial Natural Products in Predator Defense

Bacterially produced natural products, i.e., low molecular weight metabolites, or derivatives thereof, constitute most of the commercially available antibiotics as well as a large proportion of anticancer drugs. While indispensable as therapeutically active compounds, the ecological roles of many of these bacterial natural products remain poorly understood. Here, we discuss these metabolites in light of ­microbial predator defense: soil bacteria are constantly threatened by a variety of predators and the secretion of low molecular weight toxins enables the producing bacteria to kill or deter the predator. Conversely, a deeper understanding of these microbial predator–prey interactions can lead to the discovery of novel compounds, which in turn can be of therapeutic use.