Microbial Material Research Articles

Direct evidence for microbial-derived soil organic matter formation and its ecophysiological controls.

Soil organic matter (SOM) and the carbon and nutrients therein drive fundamental submicron- to global-scale biogeochemical processes and influence carbon-climate feedbacks. Consensus is emerging that microbial materials are an important constituent of stable SOM, and new conceptual and quantitative SOM models are rapidly incorporating this view. However, direct evidence demonstrating that microbial residues account for the chemistry, stability and abundance of SOM is still lacking. Further, emerging models emphasize the stabilization of microbial-derived SOM by abiotic mechanisms, while the effects of microbial physiology on microbial residue production remain unclear. Here we provide the first direct evidence that soil microbes produce chemically diverse, stable SOM. We show that SOM accumulation is driven by distinct microbial communities more so than clay mineralogy, where microbial-derived SOM accumulation is greatest in soils with higher fungal abundances and more efficient microbial biomass production.

Fungal Species Identification by MALDI-ToF Mass Spectrometry.

MALDI-TOF MS has become the standard method for routine identification of most microbial organisms in clinical laboratories and has largely replaced biochemical assays. Classification relies on extensive well curated databases, ideally covering the full spectrum of microorganisms encountered in the specimens at hands. The protocols for harvesting cells and procuring material suitable for downstream MALDI-TOF MS analyses vary in specific details between the different groups of organisms, e.g., gram-positive or -negative bacteria, mycobacteria, or fungi. With respect to fungi, methods further vary between yeasts and moulds; and even among different mould genera if they do not lyse in a similar fashion. Purification of microbial materials from clinical specimen allows the direct identification of bacteria; however this is not yet fully adapted to fungi. In this chapter, I look into the differences between the underlying methods for yeast and moulds, and for production of samples suitable for MALDI-TOF MS species identification from cultures and different clinical materials.

Characterization of key organic compounds affecting sludge dewaterability during ultrasonication and acidification treatments

This study investigated the mechanism and effects of ultrasonic pretreatment followed by acidification on sludge dewaterability through looking at the changes of extracellular polymeric substances (EPS) content, composition and stratification. The results suggested sludge filterability was closely correlated with quantity of protein (R = 0.94, p < 0.01) and polysaccharide (R = 0.97, p < 0.01) present in loosely bound EPS rather than in soluble and tightly bound EPS. The fractions of polymers, especially tryptophan-like proteins and microbial by-product like material at molecular weight of 106–5 × 107 Da, were the key compounds related to sludge filterability. Ultrasonication may increase biopolymers concentrations that in turn deteriorate sludge filterability as evidenced at high ultrasonic power conditions. However, the subsequent acidification can reduce the concentrations of these organic compounds, reduce negative zeta potential, and increase floc size, thus increase sludge filterability. Combined ultrasonic-acid pretreamtent was more effective than the acidification treatment alone in reducing the concentrations of macromolecular compounds that may deteriorate sludge filterability.

Electromagnetic Attenuation Characteristics of Microbial Materials in the Infrared Band

In this study, seven microbial materials (entomogenous fungi Bb3088 mycelia, entomogenous fungi Bb3088 spores, entomogenous fungi Ma2677 mycelia, entomogenous fungi Ma2677 spores, Bacillus subtilis 8204, Staphylococcus aureus 6725, and Saccharomyces cerevisiae 1025) were used to measure electromagnetic (EM) signal extinction. They were subjected to light absorption and reflection measurements in the range of 4000-400 cm(-1) (2.5-25 µm) using Fourier transform infrared spectroscopy. The specular reflection spectrum method was used to calculate the real (n) and imaginary (k) parts of the complex refractive index. The complex refractive index with real part n and imaginary part k in the infrared band satisfies the following conditions n ≥ 1 and k ≥ 0. The mass extinction coefficient was calculated based on Mie theory. Entomogenous fungi Ma2677 spores and entomogenous fungi Bb3088 spores were selected as EM signal extinction materials in the smoke box test. The transmittances of entomogenous fungi Bb3088 spores and entomogenous fungi Ma2677 spores were 11.63% and 5.42%, and the mass extinction coefficients were 1.8337 m(2)/g and 1.227 m(2)/g. These results showed that entomogenous fungi Bb3088 spores and entomogenous fungi Ma2677 spores have higher extinction characteristics than other microbial materials.

高校家庭科「食品衛生」授業における簡易微生物検出教材の有効性

高校家庭科「食品衛生」授業における簡易微生物検出教材の有効性

Springtime precipitation effects on the abundance of fluorescent biological aerosol particles and HULIS in Beijing.

Bioaerosols and humic-like substances (HULIS) are important components of atmospheric aerosols, which can affect regional climate by acting as cloud condensation nuclei and some of which can damage human health. Up to date, release of bioaerosols and HULIS initiated by precipitation is still poorly understood. Here we present different release processes for bioaerosols, non-bioaerosols and HULIS during a precipitation event in Beijing, China. Large fungal-spore-like aerosols were emitted at the onset and later weak stage of precipitation, the number concentration of which increased by more than two folds, while the number concentration of bacteria-like particles doubled when the precipitation strengthened. Besides, a good correlation between protein-like substances that were measured simultaneously by on-line and off-line fluorescence techniques consolidated their applications to measure bioaerosols. Furthermore, our EEM results suggest that the relative contribution of water-soluble HULIS to microbial materials was enhanced gradually by the rain event.

The role of Cajal cells in chronic prostatitis.

Types of prostatitis can be defined as groups of syndromes in adult men associated with infectious and noninfectious causes characterized frequently by lower abdominal and perineal signs and diverse clinical symptoms and complications. Etiopathogenesis of chronic prostatitis is not well defined. Moreover, its treatment outcomes are not satisfactory. Presence of c-kit positive interstitial cells in human prostate is already known. It has been demonstrated that these cells can be pacemaker cells which trigger spontaneous slow-wave electrical activity in the prostate and can be responsible for the transport of glandular secretion from acinar cells into major and minor prostatic ducts and finally into urethra. In the light of all these data, when presence of a possible inflammatory pathology is thought to involve prostate that secretes and has a reservoir which drains its secretion (for prostate, prostatic urethra), two points are worth mentioning. Impairment of secretion mechanism and collection of secretion within the organ with reflux of the microbial material from its reservoir back into prostate gland. Both of these potential conditions can be explained by ductal neuromuscular mechanism, which induces secretion. We think that in this neuromuscular mechanism interstitial Cajal cells have an important role in chronic prostatitis. Our hypothesis is that curability of prostatitis is correlated with the number of Cajal cells not subjected to apoptosis.

Assimilation of microbial and plant carbon by active prokaryotic and fungal populations in glacial forefields

Microbial communities and soil carbon (C) have been shown to vary in response to increasing vegetation cover during soil development after deglaciation. However, little is known about the ability of microorganisms to utilize various C sources in glacier forefield soils. We supplied ecologically relevant 13C-labeled C sources (Chlorella, Penicillium and Festuca) to three distinct environments (supraglacial sediments, barren soils and vegetated soils) of the Damma glacier area to monitor 13CO2 production. We identified prokaryotic and fungal populations able to utilize these sources by using DNA-stable isotope probing coupled with Illumina MiSeq sequencing of ribosomal markers. A high initial 13CO2 pulse indicated that 13C-labeled microbial and plant material were consumed. The 13C-enriched DNA results indicated that betaproteobacterial taxa affiliated to the families Oxalobacteraceae and Comamonadaceae were important players in C utilization from different sources and present in all environments. In contrast, different fungal taxa played different roles in C degradation depending on the soil environment. Overall, our findings reveal that C utilization is driven by similar prokaryotic populations along a glacier forefield, while the distribution of active fungal populations are more influenced by environmental factors.

PRESERVATION OF FOSSIL MICROBES AND BIOFILM IN CAVE POOL CARBONATES AND COMPARISON TO OTHER MICROBIAL CARBONATE ENVIRONMENTS

AbstractFossil microbes are generally preserved by authigenic minerals, including silica, apatite, iron minerals, clays, and carbonates. An alternative mode of preservation by entombment in calcite, without replacement, has been identified in carbonate cave pool microbialites that were etched and examined in the scanning electron microscope (SEM). Features identified include filaments, threads, and films that show excess carbon in energy dispersive X-ray (EDX) analyses, suggesting preservation of organic matter. Filaments are single smooth or reticulated strands with curving string-like morphology, often hollow, and with a uniform diameter of 0.5 to 1.0 μm. Threads, in contrast, are variable thickness, from several microns down to 0.1 μm, always solid, and commonly branch. Films are thin (&lt; 1 μm) drapes associated with threads. Filaments are interpreted as microbial filaments, while threads and films are interpreted as preserved extracellular polymeric substance (EPS). In addition, microbial filaments and EPS are only revealed via acid etching, suggesting preservation of organic material by entombment, not by replacement with calcite. To determine whether entombed microbes are a common feature of carbonate microbialites that form in different environmental settings, samples of hot spring travertine, caliche soil, and reef microbialite were examined. Whereas the travertine samples were barren, entombed EPS was found in the caliche soil and the reef microbialite; the latter also contained a few entombed filaments. In addition, entombed microbial material has been reported from carbonate cold seep deposits. Such findings indicate that entombment of microbes and EPS in carbonates is not restricted to cave settings, but is more widespread than previously reported. Possible causes for the lack of preservation in travertines include rapid degradation of microbial material either by sunlight due to photolytic degradation, aerobic microbial degradation, detritivore consumption, or elevated temperatures. Rapid carbonate precipitation is ruled out as, somewhat surprisingly, preservation is better in slower growing cave carbonates than in rapidly growing travertines. Potential long-term preservation of organic material entombed in carbonate has implications for the characterization of fossil microbial communities using molecular biomarkers and the search for life on other planets.

Urban waste composts enhance OC and N stocks after long-term amendment but do not alter organic matter composition

Organic matter (OM) amendments, originating from waste materials, could be used to enhance soil organic carbon (SOC) storage and fertility of cropland soils. However, there is a limited understanding about the long-term effect of different urban waste compost amendments on soil organic matter (SOM) formation processes and their impact on SOC storage. Accordingly, the long-term effects of different OM amendments on the amount and composition of particulate and mineral associated SOM were investigated. Surface soils were sampled from a Luvisol under cropping rotation, which received biannually 0.4kg organic carbonm−2 in form of three different urban composts or cattle manure for a period of 15 years.Despite similar C input, different urban waste compost amendments resulted in contrasting C storage. While there were no C stock changes for municipal solid waste compost amended soils, composts from organic waste and green waste and sewage sludge increased SOC stocks in a similar range as conventional farmyard manure. In bulk soils, SOC stocks were increased by approximately 30%, in occluded particulate OM<20μm by 155% (organic waste compost) and 71% (green waste and sewage sludge compost). Carbon storage in clay fractions showed approximately 20% higher values in all treatments. Organic matter amendments result in C–N coupling as for N proportional stock increases were recorded. The high variability of the composition of different amendment types was reflected in the particulate OM fractions but not in the highly uniform composition of the mineral-associated OM. Bulk soil wettability was not affected by the amendments, as only POM fractions showed increased hydrophobicity, but not clay fractions. Clay fractions showed high alkyl/O-alkyl and low C/N ratios, characteristic for microbial material. The OM composition in the clay fraction is determined by the microbial residues that are independent in their composition from the input material. The increased C storage in the clay fractions of the soil amended with organic wastes and green waste and sewage sludge compost and farmyard manure might be promoted by a better microbial use efficiency leading to C sequestration as microbial compounds.

PEPR: pipelines for evaluating prokaryotic references.

The rapid adoption of microbial whole genome sequencing in public health, clinical testing, and forensic laboratories requires the use of validated measurement processes. Well-characterized, homogeneous, and stable microbial genomic reference materials can be used to evaluate measurement processes, improving confidence in microbial whole genome sequencing results. We have developed a reproducible and transparent bioinformatics tool, PEPR, Pipelines for Evaluating Prokaryotic References, for characterizing the reference genome of prokaryotic genomic materials. PEPR evaluates the quality, purity, and homogeneity of the reference material genome, and purity of the genomic material. The quality of the genome is evaluated using high coverage paired-end sequence data; coverage, paired-end read size and direction, as well as soft-clipping rates, are used to identify mis-assemblies. The homogeneity and purity of the material relative to the reference genome are characterized by comparing base calls from replicate datasets generated using multiple sequencing technologies. Genomic purity of the material is assessed by checking for DNA contaminants. We demonstrate the tool and its output using sequencing data while developing a Staphylococcus aureus candidate genomic reference material. PEPR is open source and available at https://github.com/usnistgov/pepr.Electronic supplementary materialThe online version of this article (doi:10.1007/s00216-015-9299-5) contains supplementary material, which is available to authorized users.

Antimicrobial carbon materials incorporating copper nano‐crystallites and their PLA composites

ABSTRACTIn the first stage, carbon materials were manufactured from chitin and chitosan as the main precursor. Chitin and chitosan were impregnated with Cu2+ ions. Using heat treatment, the organic matter (biopolymers) was transformed into a porous carbon matrix, while copper ions were transformed into copper‐based nano‐crystallites containing copper atoms in a +1 and 0 oxidation state. Such synthesized carbons exhibited high contact antifungal activity, e.g., for sample, CH‐ACu0.1_Ox against R. nigricans the inhibition zone is 10.27 mm. In the second stage, composite polymer films were manufactured by mixing polylactide (PLA) and the obtained microbial carbon material (up to 3 wt % Cu‐carbon content). Despite the very low content of carbon material (3 wt %), the composite PLA films exhibited excellent microbial properties for selected bacteria and fungi, e.g., sample CuCM3%/PLA demonstrated high log10 reduction values of 2.17 and 2.66 for the strains of E. coli and S. aureus, respectively. The composite films, and their components, were examined by means of diversified physicochemical methods like low temperature adsorption of nitrogen, SEM, elemental analysis, XRD, cyclic voltammetry, antifungal, and antibacterial analysis. © 2016 Wiley Periodicals, Inc. J. Appl. Polym. Sci. 2016, 133, 43429.

Fossil redox-conditions influence organic matter composition in loess paleosols

The soil memory recorded in paleosols of loess-paleosol sequences is an important contributor to our understanding of past climatic conditions. Molecular proxies based on the organic matter preserved in paleosols form an essential part of this record, but the long-term preservation of SOM is poorly understood, especially for sediment traps and slope profiles. This paper addresses the composition of organic material from the Early Weichselian A-horizons of the Rocourt paleosol, a major paleostratigraphic marker for the Eemian and Early Weichselian in Western Europe. NaOH-extractable organic matter from an exceptionally thick Rocourt profile in the Kesselt Quarry (Belgian Loess Belt) was analyzed by pyrolysis-Gas Chromatography/Mass Spectrometry (pyrolysis-GC/MS) and the results evaluated against paleopedological data. The molecular composition of the organic matter at Kesselt was compared with reference samples from two nearby quarries (including the type locality at Veldwezelt-Hezerwater), and to a sample from the contemporary Nussloch sequence in Germany. The SOM composition found at the four sites indicated a large content of microbial matter and was dominated by carbohydrates and N compounds, many of which were not reported before from SOM pyrolysates. Differences in the molecular composition between samples, both within profiles and between sites, coincided with differences in landscape position (slope-shoulder-plateau) and fossil redox conditions (surface gleys). Samples form drier and more upland situations contained more burnt material, while samples from slope profiles and surface gleys contained even more microbial material, in particular chitin. Results therefore suggest that the admixture of microbial SOM is considerable in loess-paleosols and that differences in edaphic conditions (in particular slope position and soil moisture) and occurrence of wildfires are important for the long-term preservation of SOM. These should therefore be considered when interpreting biogeochemical proxies.

Photoautotrophic microorganisms as a carbon source for temperate soil invertebrates.

We tested experimentally if photoautotrophic microorganisms are a carbon source for invertebrates in temperate soils. We exposed forest or arable soils to a (13)CO2-enriched atmosphere and quantified (13)C assimilation by three common animal groups: earthworms (Oligochaeta), springtails (Hexapoda) and slugs (Gastropoda). Endogeic earthworms (Allolobophora chlorotica) and hemiedaphic springtails (Ceratophysella denticulata) were highly (13)C enriched when incubated under light, deriving up to 3.0 and 17.0%, respectively, of their body carbon from the microbial source in 7 days. Earthworms assimilated more (13)C in undisturbed soil than when the microbial material was mixed into the soil, presumably reflecting selective surface grazing. By contrast, neither adult nor newly hatched terrestrial slugs (Deroceras reticulatum) grazed on algal mats. Non-photosynthetic (13)CO2 fixation in the dark was negligible. We conclude from these preliminary laboratory experiments that, in addition to litter and root-derived carbon from vascular plants, photoautotrophic soil surface microorganisms (cyanobacteria, algae) may be an ecologically important carbon input route for temperate soil animals that are traditionally assigned to the decomposer channel in soil food web models and carbon cycling studies.

Biochemical Changes During Decomposition

The decomposition is the essential process found in the nature; carried out by microorganisms. Plants are no exception to decomposition. There dead remains get decomposed; and the nutrients locked up in the litter as well as a number of new substrates formed in the process of decomposition, pass down to the soil profile, this increase the “ humus” and fertility of soil. The plant material generally made up of lignocellulosic materials. Due to complexities involved in the separation of microbial material synthesized from the unchanged residues, the analysis of biochemical changes further more difficult. Some efforts have been made to develop techniques for the biochemical analysis of decomposing plant litters. It has been observed those water soluble fractions (Amino acid, simple sugars and peptides) are least resistant therefore first to be metabolized by microorganisms and followed by celluloses, hemicelluloses and lignin.

Whole-Genome Sequencing in Microbial Forensic Analysis of Gamma-Irradiated Microbial Materials

Effective microbial forensic analysis of materials used in a potential biological attack requires robust methods of morphological and genetic characterization of the attack materials in order to enable the attribution of the materials to potential sources and to exclude other potential sources. The genetic homogeneity and potential intersample variability of many of the category A to C bioterrorism agents offer a particular challenge to the generation of attributive signatures, potentially requiring whole-genome or proteomic approaches to be utilized. Currently, irradiation of mail is standard practice at several government facilities judged to be at particularly high risk. Thus, initial forensic signatures would need to be recovered from inactivated (nonviable) material. In the study described in this report, we determined the effects of high-dose gamma irradiation on forensic markers of bacterial biothreat agent surrogate organisms with a particular emphasis on the suitability of genomic DNA (gDNA) recovered from such sources as a template for whole-genome analysis. While irradiation of spores and vegetative cells affected the retention of Gram and spore stains and sheared gDNA into small fragments, we found that irradiated material could be utilized to generate accurate whole-genome sequence data on the Illumina and Roche 454 sequencing platforms.

Composition of the organic matter in soils from six pedoclimatic zones of Magdalena (Colombia)

The soils in the NE of the Magdalena province (Colombia) are subject to intense degradation primarily because of the low accumulation rate of soil organic matter (SOM) and its fast turnover. Numerous traditional studies have aimed to mitigate this situation, focusing on the analysis of total SOM contents. The present study aimed to determine SOM quality from six areas under humid and dry tropical forest with different pedoclimatic conditions, using molecular characterization. For each area, sites with different current land use were studied, including forest and cultivated sites. We applied analytical pyrolysis (pyrolysis-GC/MS) to aqueous NaOH-extractable SOM from surface soil samples. One-hundred and ten pyrolysis products were identified and quantified, from the following chemical groups: N-containing compounds (34.1 ± 5.1%), carbohydrate markers (21.1% ± 7.1%), monocyclic aromatic compounds (20.0% ± 4.5%), aliphatic compounds (7.7% ± 1.4%), phenols (7.0% ± 5.0%), polycyclic aromatic compounds (3.6% ± 0.9 %), lignin products (0.3% ± 0.3%) and other compounds (0.2% ± 0.1%). SOM of all studied areas showed a large proportion of N-containing products, indicating a high contribution from microbial material to the SOM. Multivariate statistics allowed for the differentiation between microbial-derived and plant-derived SOM (Factor 1) and the relative proportion of burning residues (Factor 2), and indicated that pedoclimatic conditions exert more influence on SOM composition (cool and humid zones were enriched in microbial SOM while dry zones contained more plant-derived SOM) than land use for the studied soils.

Efecto de Dicamba y de ácido 2,4 diclorofenoxiacético sobre la embriogénesis somática en caña de azúcar

&lt;p&gt;&lt;strong&gt;Título en ingles&lt;/strong&gt;: Efecto de Dicamba y de ácido 2,4 diclorofenoxiacético sobre la embriogénesis somática en caña de azúcar&lt;/p&gt;&lt;p&gt;El cultivo &lt;em&gt;in vitro&lt;/em&gt; de la caña de azúcar ha sido establecido en muchas variedades comerciales con el propósito de producir material libre de enfermedades microbianas, conservar germoplasma, detectar resistencia a enfermedades y plagas, etc. En este sentido, el objetivo de este trabajo fue analizar la efectividad de las auxinas sintéticas ácido 2,4-diclorofenoxiacético (2,4D) y ácido 3,6-dicloro-2-metoxibenzoico (Dicamba), en la inducción del proceso de embriogénesis somática y la regeneración de vitroplántulas de distintas variedades de caña de azúcar (C26670, RB855546, V99245, V756, V781, V0050, CC8592, CC8475). Para esto se cultivaron discos de hojas en fase de macollamiento, de 1 cm de diámetro y 2 mm de grosor, en medio Murashige-Skoog, 1962 (MS) suplementado con 50 ml.l-1 agua de coco, 30 g.l-1 sacarosa y dos tratamientos diferentes: 3 mg.l-1 2,4-D ó 6.63 mg.l-1 Dicamba, ambos en completa oscuridad a 25ºC, durante 1 mes. Los callos obtenidos se colocaron en medio de regeneración, conteniendo ½ sales MS, 200 ml.l-1 agua de coco y 60 g.L-1 sacarosa, incubándose bajo luz continua, 25ºC, por 2 meses. El mayor porcentaje de callo embriogénico se obtuvo en medios suplementados con Dicamba un promedio de 70,83 % de callo embriogénico por variedad ; mientras que en los medios con 2,4D se obtuvo 62,08 % de callo embriogénico por variedad. Se obtuvo un promedio de 89,00 % de plantas regeneradas a partir de los callos obtenidos en medios con Dicamba y 66,12 % de plantas a partir de callos obtenidos en medios con 2,4D. Con el uso de Dicamba se estableció un sistema eficiente de embriogénesis somática para estas variedades de caña de azúcar.&lt;/p&gt;

Passive dust collectors for assessing airborne microbial material.

BackgroundSettled airborne dust is used as a surrogate for airborne exposure in studies that explore indoor microbes. In order to determine whether detecting differences in dust environments would depend on the sampler type, we compared different passive, settled dust sampling approaches with respect to displaying qualitative and quantitative aspects of the bacterial and fungal indoor microbiota.ResultsSettled dust sampling approaches—utilizing plastic petri dishes, TefTex material, and electrostatic dustfall collectors (EDCs)—were evaluated in indoor spaces in the USA and Finland and in an experimental chamber study. The microbial content was analyzed with quantitative PCR (qPCR) to quantify total bacterial and fungal biomass and through high-throughput sequencing to examine bacterial community composition. Bacterial composition and diversity were similar within a sampling environment regardless of the sampler type. The sampling environment was the single largest predictor of microbial community composition within a study, while sampler type was found to have much less predictive power. Quantitative analyses in indoor spaces indicated highest yields using a petri dish approach, followed by sampling with EDCs and TefTex. The highest correlations between duplicate samples were observed for EDC and petri dish approaches, indicating greater experimental repeatability for these sampler types. For the EDC samples, it became apparent that, due to the fibrous nature of the material, a rigorous extraction protocol is crucial to obtain optimal yields and stable, repeatable results.ConclusionsCorrelations between sampler types were strong both in compositional and quantitative terms, and thus, the particular choice of passive settled dust sampler is not likely to strongly alter the overall conclusion of a study that aims to characterize dust across different environments. Microbial cell abundances determined from settled dust varied with the use of different sampling approaches, and thus, consistency in the method is necessary to allow for absolute comparisons within and among studies. Considering practical aspects, petri dishes were found to be an inexpensive, simple, and feasible approach that showed the highest quantitative determinations under typical building conditions, though the choice of sampler will ultimately depend on study logistics and characteristics such as low- or high-exposure settings.Electronic supplementary materialThe online version of this article (doi:10.1186/s40168-015-0112-7) contains supplementary material, which is available to authorized users.

ID: 28: Influenza B virus entry induces RIG-I-dependent rapid interferon gene expression

Macrophages and dendritic cells are equipped with a plethora of pattern recognition receptors which are activated by microbial structural components and genetic material. Many of the receptors sense the presence of viral RNA and DNA and activate signaling cascades leading to the induction of interferons, other cytokines and antiviral proteins. In the present study we have analyzed immediate early activation of innate immunity by influenza B virus infection in human monocyte-derived dendritic cells (moDC) and macrophages. Influenza viruses enter the cell mainly via clathrin-mediated endocytosis followed by the release of the vRNP complexes into the cytoplasm and transport into the nucleus where viral transcription and replication is initiated. We have shown before that influenza A virus induces interferon responses in human moDCs only after replication of the viral genome whereas influenza B virus triggers IFN gene expression prior to any transcription or replication of the virus. Here we show that in human macrophages influenza B virus activates IRF3 phosphorylation and nuclear accumulation after the fusion of the viral membrane with the endosomal membranes in a process where no viral transcription or synthesis of influenza B virus proteins is needed. Experiments with knock-out mouse embryonic fibroblasts lacking RIG-I or/and MDA5 receptors show that influenza B virus-induced early activation of IRF3 is RIG-I dependent. Revealing the molecular mechanisms of influenza virus and host cell interactions may lead to better means to control influenza virus infections in the human host.