Aluminum hulls, which are preferred in the marine industry due to their durability, corrosion resistance, and lightweight properties, face serious challenges due to thermal deformation during welding. This study aims to predict and minimize transverse deformations due to welding sequences for a transverse model in the lower part of an aluminum hull. To predict deformations, heat source dimensions obtained from actual weld beads were used as simulation conditions, and various welding sequence conditions were simulated through the developed finite element method (FEM). The simulation results were compared with actual deformation measurements to verify their reliability, and the optimal welding sequence which minimized deformation was derived. The simulation results show that by changing the welding sequence conditions, the maximum displacement can be reduced from a maximum of 52.1% to a minimum of 39.1%, and the effective plastic strain can be reduced from a maximum of 19.6% to a minimum of 4.8%. These results show that adjusting the welding sequence conditions can significantly improve structural integrity by minimizing deformation. The results of this study suggest that the control of the welding sequence can be used to reduce the deformation of aluminum hulls and promote a more sustainable marine industry with improved quality.