Abstract The evaluation of the spatial and temporal distribution of groundwater recharge is required to develop the regional groundwater model for more precise simulations of various management scenarios. WetSpass-M (Water and Energy Transfer between Soil, Plants, and Atmosphere under Steady-State Conditions), which is a GIS-based spatially distributed water balance model, is deployed to evaluate monthly groundwater recharge, surface runoff, and actual evapotranspiration in the Low Folded Zone from 2000 to 2019. ArcGIS software prepares the essential relevant input data for the Wetspass-M model as grid maps. They include monthly climatological measurements (precipitation, temperature, and wind speed), land cover distribution, soil map, groundwater depth, topography, and slope. The mean annual groundwater recharge, evapotranspiration, and runoff were found to be 128, 131, and 72 mm, respectively. Accordingly, recharge accounts for 39% of the precipitation, while the rest, 40 and 21%, become evapotranspiration and surface runoff, respectively. WetSpass-M model results are meant to enable integrated groundwater modeling. The study of simulation data demonstrates that the WetSpass-M model accurately simulates the hydrological water budget components of the Low Folded Zone. In addition, a better understanding of the simulated spatial and temporal distribution of water balance components is beneficial for managing and planning the available water resources of the Low Folded Zone in Iraq, which faces water scarcity threats.