Improving peak oxygen uptake (V̇O2peak) and maximal strength are key objectives of rehabilitation for patients with unspecific musculoskeletal disorders (MSDs). Although high-intensity training yield superior outcomes for these factors, patients with MSDs may not tolerate high-intensity due to pain and fear. Therefore, we examined the effect and feasibility of incorporating aerobic high-intensity intervals (HIITs) and maximal strength training (MST) in a standard clinical rehabilitation program for patients with unspecific MSDs. 73 patients (45±10years) with MSDs partaking in a standard, public, and 4-week rehabilitation program were randomized to high-intensity training (HG: 4×4 minutes intervals at ∼90% of maximal heart rate; HRmax, and 4×4 repetitions leg press at ∼90% of 1 repetition maximum; 1RM, with maximal intended velocity) or keep todays treatment of low-to moderate-intensity training (MG: various cycling, walking, and/or running activities at ∼70%-80% of HRmax and 3×8-10 repetitions leg press at ∼75% of 1RM without maximal intended velocity). HG improved V̇O2peak (12±7%) and leg press 1RM (43±34%) more than moderate-intensity group (V̇O2peak; 5±6%, 1RM; 19±18%, both p<0.001). We observed that no adverse events and no between-group differences in dropout rate or self-reported quality of life (both p>0.05). There were positive correlations between improved V̇O2peak and improved physical (p=0.024) and emotional (0.016) role functioning. We conclude that both high-intensity interval training and MST are feasible and improve V̇O2peak and maximal strength more than standard low-to moderate-intensity treatment of patients with unspecific MSDs. Our findings suggest that high-intensity training should be implemented as a part of standard clinical care of this patient population.