Mapping Of Sites Research Articles

Побудова твердотілої моделі історичного об’єкту: на прикладі форту «Марушка Ліс»

Purpose of this work is to use terrestrial laser scanning for analysis and construction of a digital model of the fort “Marushka Lis” focusing on the process of data collection, processing, and their further use, particularly for web mapping of post-military sites. In the modern world, the preservation and restoration of historical structures is an important task that requires the application of advanced technologies. Methodology. Terrestrial laser scanning serves as an indispensable tool in this process, providing accurate and detailed spatial data. A technological scheme for creating a digital model of a historical object has been proposed. The study of historical objects using various methods of information collection was considered, namely: topographic surveying, terrestrial digital photogrammetry, terrestrial laser scanning, ground-penetrating radar studies, tachymetric surveying, GNSS. The methodology for creating a digital model of a historical object and the presented technological scheme, which includes data collection, processing of the obtained results, and output data, are described. Results. A comprehensive approach was applied to create the model, which included studying the history of the object, terrestrial laser scanning, terrestrial digital photogrammetry, and conducting geodetic measurements. A key aspect was the accurate and detailed reproduction of all architectural and structural elements of the fort. The use of software such as Leica Cyclone REGISTER 360, Autodesk ReCap, and Autodesk Revit allowed the integration of collected data into one accurate and detailed model. The sequential execution of work according to the proposed methodology enabled the creation of a digital model of the fort “Marushka Lis.” Scientific novelty and practical significance. The scientific novelty lies in the use of terrestrial laser scanning and 3D modeling for the reconstruction of a destroyed post-military object. The obtained digital model of the fort “Marushka Lis” will be used in web mapping of post-military sites in Lviv region.

Three-Dimensional Visualization of Adsorption Distribution in a Single Crystalline Particle of a Metal-Organic Framework.

Many unique adsorption properties of metal-organic frameworks (MOFs) have been revealed by diffraction crystallography, visualizing their vacant and guest-loaded crystal structures at the molecular scale. However, it has been challenging to see the spatial distribution of the adsorption behaviors throughout a single MOF particle in a transient equilibrium state. Here, we report three-dimensional (3D) visualization of molecular adsorption behaviors in a single crystalline particle of a MOF by in situ X-ray absorption fine structure spectroscopy combined with computed tomography for the first time. The 3D maps of water-coordinated Co sites in a 100 μm-scale MOF-74-Co crystal were obtained with 1 μm spatial resolution under several water vapor pressures. Through the visualization of the water vapor adsorption process, 3D spectroimaging revealed the mechanism and spatial heterogeneity of guest adsorption inside a single particle of a crystalline MOF.

Abstract 5639: TIP60-independent mechanism of BRD8 is involved in colorectal tumorigenesis

Abstract Modifications of histone tails control chromatin structure, and the acetylation is generally associated with euchromatin and transcriptional activation. Acetylated lysine residues are recognized by bromodomains, which serve as acetyl-lysine binding modules and participate in transcriptional regulation. Bromodomain-containing protein 8 (BRD8) is a subunit of the NuA4/TIP60-histone acetyltransferase complex. Although BRD8 has been considered to act as a co-activator of the complex, its biological role remains to be unclear. In this study, we revealed that BRD8 accumulates in colorectal cancer cells through the inhibition of ubiquitin-dependent protein degradation by the interaction with MRG domain binding protein (MRGBP). RNA-seq analysis coupled with genome-wide mapping of BRD8-binding sites disclosed that BRD8 transactivates a set of genes independently of TIP60, a catalytic subunit of NuA4 complex, and that BRD8 regulates the expression of multiple subunits of the pre-replicative complex (pre-RC) in concert with the activator protein-1 (AP-1) transcription factor. Depletion of BRD8 induced cell-cycle arrest at the G1 phase and suppressed proliferation of colorectal cancer cells. We have also shown that the bromodomain of BRD8 is indispensable for not only the interaction with histone H4 or transcriptional regulation but also its own protein stability. These findings provide a new insight into the roles played by BRD8 in human colorectal carcinogenesis and will contribute to the development of new chemotherapeutic agents targeting the bromodomain of BRD8. Citation Format: Kiyoshi Yamaguchi, Saya Nakagawa, Rui Yamaguchi, Paul Sheridan, Kiyoko Takane, Tsuneo Ikenoue, Satoru Nagatoishi, Hiroko Kozuka-Hata, Masaaki Oyama, Susumu Aikou, Yuka Ahiko, Dai Shida, Kouhei Tsumoto, Satoru Miyano, Seiya Imoto, Yoichi Furukawa. TIP60-independent mechanism of BRD8 is involved in colorectal tumorigenesis [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2024; Part 1 (Regular Abstracts); 2024 Apr 5-10; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2024;84(6_Suppl):Abstract nr 5639.

Abstract 5741: siteDAR, complete antibody drug conjugate, ADC characterization

Abstract Antibody drug conjugate characterization currently extends to the global determination of the drug -to- antibody ratio (DAR). However, there can be confounding batch variability in pharmacological outcome from ADCs of the same drug, antibody, and DAR. Previously, DAR was obtained by quantifying the extent of modification of the intact antibody or its protein subunits. The coupling chemistry is used to infer which type of amino acids were modified but generally no specific sites of modification are identified and if identification is obtained, it is not quantitative. Borrowing the rigorously reproducible proteolytic digestion methods from multi-atribute mapping (MAM) used in monoclonal antibody manufacture, and compiling a comprehensive quantitative assignment of every abundant peptide in the ADC digest we can both calculate a DAR from the ion volume ratios and a quantitative map of the specific modified sites. This method, termed “siteDAR”, is applied here to both commercial Kadcyla® (ado-trastuzumab emtansine) and in-house preparations of ado-trastuzumab emtansine. We show that preparations of Kadcyla® with the same DAR can have significantly different quantitative maps of modification sites. We use siteDAR analysis in our ADC design cycle to characterize an ADC, and have developed an ADC synthesis method that was quantitatively verified, and had increased biosimilarity with commercially available Kadcyla®. siteDAR for commercial Kadcyla siteDAR for initial in-house Kadcyla Initial biosimilarity Citation Format: Warham L. Martin, Michael Senseney, Bhaskar Kusuma, Julien Dugal-Tessier, Nareshkumar Jain. siteDAR, complete antibody drug conjugate, ADC characterization [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2024; Part 1 (Regular Abstracts); 2024 Apr 5-10; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2024;84(6_Suppl):Abstract nr 5741.

Abstract 5776: Target identification, selectivity profiling and binding site mapping of small molecule and peptide drugs by LiP-MS

Abstract Target identification in the cellular context is a critical step for both target-based and phenotypic drug discovery. Limited proteolysis coupled with mass spectrometry (LiP-MS) has emerged as a powerful technique for target deconvolution of small molecules or peptides in cell lysate without compound modification or genetic manipulation of cell lines [1,2,3,4]. Utilizing a non-specific protease under well-controlled conditions, LiP-MS exploits drug-induced structural alteration or steric hindrance on protein targets and utilizes quantitative mass spectrometry to probe over 250’000 peptides covering more than 9000 proteins in the proteome. To aid target ID, this workflow incorporates a 7-concentration dose response experiment and a machine-learning framework [1] to compute a LiP-score to rank identified target proteins, as well as predict potential binding site. In this study, we present target deconvolution results on four small molecule compounds and one peptide compound with very distinct pharmacological profile: 1) staurosporine, a broad-specific kinase inhibitor; 2) roniciclib, a failed clinical-stage pan-CDK inhibitor; 3) selumetinib, an allosteric, non-ATP-competitive MEK 1 and 2 inhibitor; 4) NST-628, a newly developed non-degradating molecular glue inhibiting the RAS/MAPK pathway; and 5) Acetyl-calpastatin, a 24 amino-acid polypeptide inhibitor of calpain 1 and 2. Target ID experiment with staurosporine and roniciclib yielded > 150 and 68 kinase targets were identified respectively. For the pan-kinase inhibitor roniciclib, both cell-cycle CDKs (CDK1/cyclin B, CDK2/cyclin E, CDK4 cyclin D) and transcriptional CDK9 were among the targets. For Selumetinib, LiP-score ranking identified MEK1 and MEK2 as the top two targets, and only kinases among a total of 23 targets. Furthermore, mapping the LiP-peptides from this experiment onto MEK1 showed that they are in close proximity to the selumetinib allosteric binding site on co-crystal structure. Last but not least, we assessed the target landscape of NST-628, a novel non-degrading molecular glue and identified MEK1 and MEK2 clearly as the primary targets. This finding is in line with orthogonal data obtained from X-ray crystallography [5]. Collectively, this data demonstrates that LiP-MS can be deployed to effectively identify protein drug targets and predict binding sites in complex cellular millieu independent of the compound’s mechanism of action and without compound modification or labeling. These capabilities make LiP-MS a powerful addition to the target deconvolution toolbox. [1] Piazza and Beaton et al. Nature Comm 2020 [2] Hendricks and Beaton et al. ACS Chem Bio 2021 [3] AACR 2022 [4] AACR 2023 [5] AACR-NCI-EORTC 2023 Citation Format: Fabio Sabino, Martin Soste, Dominique Kamber, Maria Stella Ritorto, Klaus Hoeflich, Michael Hale, Bradley Quade, Xin Huang, Nigel Beaton, Roland Bruderer, Yuehan Feng, Lukas Reiter. Target identification, selectivity profiling and binding site mapping of small molecule and peptide drugs by LiP-MS [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2024; Part 1 (Regular Abstracts); 2024 Apr 5-10; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2024;84(6_Suppl):Abstract nr 5776.

Early real-world implant experience with a helix-fixation ventricular leadless pacemaker.

Roughly one in six patients receiving conventional transvenous pacemaker systems experience significant complications within 1year of implant, mainly due to the transvenous lead and subcutaneous pocket. A new helix-fixation single-chamber ventricular leadless pacemaker (LP) system capable of pre-deployment exploratory electrical mapping is commercially available. Such an LP may mitigate complications while streamlining the implantation. In this study, the initial real-world implant experience of the helix-fixation LP was evaluated following its commercial release. In patients indicated for single-chamber right ventricular pacing, helix-fixation Aveir VR LPs (Abbott, Abbott Park, IL) were implanted using the dedicated loading tool, introducer, and delivery catheter. Implant procedural characteristics, electrical parameters, and any 30-day procedure-related adverse events of consecutive implant attempts were retrospectively evaluated. A total of 167 patients with Class I indication for permanent pacing received implants in four North American centers (57% male, 70years old). Pre-fixation electrical mapping of potential sites allowed repositioning to be avoided in 95.7% of patients. Median [interquartile range] LP procedure and fluoroscopy durations were 25.5min [20.0, 35.0] and 5.7min [4.0, 9.2], respectively. Pacing capture threshold, sensed R-wave amplitude, and impedance were 0.8V [0.5, 1.3], 9.0mV [6.0, 12.0], and 705 Ω [550, 910], respectively. Implantation was successful in 98.8% of patients, with 98.2% free from acute adverse events. The initial, real-world experience of the helix-fixation ventricular leadless pacemaker demonstrated safe and efficient implantation with minimal repositioning, viable electrical metrics, and limited acute complications.

Understanding the Spatial Distribution of Ecotourism in Indonesia and Its Relevance to the Protected Landscape

Ecotourism, a dynamic force in global tourism, holds promise for conserving the environment while ensuring benefits for local economies. In this study, we developed an ecotourism distribution map of Indonesia. We utilized location-based social networks (LSBNs) data derived from Google Maps API to map 172 ecotourism sites in Indonesia. Furthermore, we investigated the distribution patterns of ecotourism within Indonesia’s protected landscapes and ecoregions. The factors that influenced ecotourism distribution in the region were analyzed using the MaxEnt model (because of its application for presence-only data). The key findings revealed that ecotourism sites are predominantly distributed across national parks and protected forest areas, and generally consist of mountainous and hilly terrain according to the ecoregion types. The MaxEnt model results indicated that population density was the most influential factor in ecotourism distribution. The significance of our study lies in its methodologies and results, which offered novel approaches to nationwide mapping and addressed the lack of an ecotourism site map of Indonesia. Notably, the proposed model can be customized for other regions with limited ecotourism data; thus, our study can serve as a foundation for future interdisciplinary studies on ecotourism, sustainability, and landscape planning.

Comprehensive map of ribosomal 2'-O-methylation and C/D box snoRNAs in Drosophila melanogaster.

During their maturation, ribosomal RNAs (rRNAs) are decorated by hundreds of chemical modifications that participate in proper folding of rRNA secondary structures and therefore in ribosomal function. Along with pseudouridine, methylation of the 2'-hydroxyl ribose moiety (Nm) is the most abundant modification of rRNAs. The majority of Nm modifications in eukaryotes are placed by Fibrillarin, a conserved methyltransferase belonging to a ribonucleoprotein complex guided by C/D box small nucleolar RNAs (C/D box snoRNAs). These modifications impact interactions between rRNAs, tRNAs and mRNAs, and some are known to fine tune translation rates and efficiency. In this study, we built the first comprehensive map of Nm sites in Drosophila melanogaster rRNAs using two complementary approaches (RiboMethSeq and Nanopore direct RNA sequencing) and identified their corresponding C/D box snoRNAs by whole-transcriptome sequencing. We de novo identified 61 Nm sites, from which 55 are supported by both sequencing methods, we validated the expression of 106 C/D box snoRNAs and we predicted new or alternative rRNA Nm targets for 31 of them. Comparison of methylation level upon different stresses show only slight but specific variations, indicating that this modification is relatively stable in D. melanogaster. This study paves the way to investigate the impact of snoRNA-mediated 2'-O-methylation on translation and proteostasis in a whole organism.

The protein phosphorylation landscape in photosystem I of the desert algae Chlorella sp.

The phosphorylation of photosystem II (PSII) and its antenna (LHCII) proteins has been studied, and its involvement in state transitions and PSII repair is known. Yet, little is known about the phosphorylation of photosystem I (PSI) and its antenna (LHCI) proteins. Here, we applied proteomics analysis to generate a map of the phosphorylation sites of the PSI-LHCI proteins in Chlorella ohadii cells that were grown under low or extreme high-light intensities (LL and HL). Furthermore, we analyzed the content of oxidized tryptophans and PSI-LHCI protein degradation products in these cells, to estimate the light-induced damage to PSI-LHCI. Our work revealed the phosphorylation of 17 of 22 PSI-LHCI subunits. The analyses detected the extensive phosphorylation of the LHCI subunits Lhca6 and Lhca7, which is modulated by growth light intensity. Other PSI-LHCI subunits were phosphorylated to a lesser extent, including PsaE, where molecular dynamic simulation proposed that a phosphoserine stabilizes ferredoxin binding. Additionally, we show that HL-grown cells accumulate less oxidative damage and degradation products of PSI-LHCI proteins, compared with LL-grown cells. The significant phosphorylation of Lhca6 and Lhca7 at the interface with other LHCI subunits suggests a physiological role during photosynthesis, possibly by altering light-harvesting characteristics and binding of other subunits.

Case report: Para Hisian Atrial Tachycardia

Case report: Para Hisian Atrial Tachycardia

Mapping m6A Sites on HIV-1 RNA Using Oligonucleotide LC-MS/MS.

The biological significance of chemical modifications to the ribonucleic acid (RNA) of human immunodeficiency virus type-1 (HIV-1) has been recognized. However, our understanding of the site-specific and context-dependent roles of these chemical modifications remains limited, primarily due to the absence of nucleotide-resolution mapping of modification sites. In this study, we present a method for achieving nucleotide-resolution mapping of chemical modification sites on HIV-1 RNA using liquid chromatography and tandem mass spectrometry (LC-MS/MS). LC-MS/MS, a powerful tool capable of directly analyzing native RNAs, has proven effective for mapping RNA modifications in small RNA molecules, including ribosomal RNA and transfer RNA. However, longer RNAs have posed challenges, such as the 9 Kb HIV-1 virion RNA, due to the complexity of and ambiguity in mass differences among RNase T1-cleaved RNA fragments in LC-MS/MS data. Here, we introduce a new target RNA enrichment method to isolate small local RNA fragments of HIV-1 RNA that potentially harbor site-specific N6-methyladenosine (m6A) modifications. In our initial trial, we used target-specific DNA probes only and encountered insufficient RNA fragmentation due to inefficient S1 digestion near the target site. Recognizing that inefficient S1 digestion by HIV-1 RNA is likely due to the formation of secondary structures in proximity to the target site, we designed multiple DNA probes annealing to various sites of HIV-1 RNA to better control the structures of RNA substrates for S1 digestion. The use of these non-target DNA probes significantly improved the isolation of more homogeneous target RNA fragments of approximately 50 bases in length. Oligonucleotide LC-MS/MS analysis of these isolated target RNA fragments successfully separated and detected both m6A-methylated and non-methylated oligomers at the two m6A-predicted sites. The principle of this new target enrichment strategy holds promise and should be broadly applicable to the analysis of any lengthy RNA that was previously deemed infeasible for investigation using oligonucleotide LC-MS/MS.

Enhanced mapping of small-molecule binding sites in cells.

Photoaffinity probes are routinely utilized to identify proteins that interact with small molecules. However, despite this common usage, resolving the specific sites of these interactions remains a challenge. Here we developed a chemoproteomic workflow to determine precise protein binding sites of photoaffinity probes in cells. Deconvolution of features unique to probe-modified peptides, such as their tendency to produce chimeric spectra, facilitated the development of predictive models to confidently determine labeled sites. This yielded an expansive map of small-molecule binding sites on endogenous proteins and enabled the integration with multiplexed quantitation, increasing the throughput and dimensionality of experiments. Finally, using structural information, we characterized diverse binding sites across the proteome, providing direct evidence of their tractability to small molecules. Together, our findings reveal new knowledge for the analysis of photoaffinity probes and provide a robust method for high-resolution mapping of reversible small-molecule interactions en masse in native systems.

Enhanced bovine genome annotation through integration of transcriptomics and epi-transcriptomics datasets facilitates genomic biology.

The accurate identification of the functional elements in the bovine genome is a fundamental requirement for high-quality analysis of data informing both genome biology and genomic selection. Functional annotation of the bovine genome was performed to identify a more complete catalog of transcript isoforms across bovine tissues. A total of 160,820 unique transcripts (50% protein coding) representing 34,882 unique genes (60% protein coding) were identified across tissues. Among them, 118,563 transcripts (73% of the total) were structurally validated by independent datasets (PacBio isoform sequencing data, Oxford Nanopore Technologies sequencing data, de novo assembled transcripts from RNA sequencing data) and comparison with Ensembl and NCBI gene sets. In addition, all transcripts were supported by extensive data from different technologies such as whole transcriptome termini site sequencing, RNA Annotation and Mapping of Promoters for the Analysis of Gene Expression, chromatin immunoprecipitation sequencing, and assay for transposase-accessible chromatin using sequencing. A large proportion of identified transcripts (69%) were unannotated, of which 86% were produced by annotated genes and 14% by unannotated genes. A median of two 5' untranslated regions were expressed per gene. Around 50% of protein-coding genes in each tissue were bifunctional and transcribed both coding and noncoding isoforms. Furthermore, we identified 3,744 genes that functioned as noncoding genes in fetal tissues but as protein-coding genes in adult tissues. Our new bovine genome annotation extended more than 11,000 annotated gene borders compared to Ensembl or NCBI annotations. The resulting bovine transcriptome was integrated with publicly available quantitative trait loci data to study tissue-tissue interconnection involved in different traits and construct the first bovine trait similarity network. These validated results show significant improvement over current bovine genome annotations.

Simultaneous and site-specific profiling of heterogeneity and turnover in protein S-acylation by intact S-acylated peptide analysis with a cleavable bioorthogonal tag.

Protein S-acylation is an important lipid modification characteristic for heterogeneity in the acyl chain and dynamicity in the acylation/deacylation cycle. Most S-acylproteomic research has been limited by indirect identification of modified proteins/peptides without attached fatty acids, resulting in the failure to precisely characterize S-acylated sites with attached fatty acids. The study of S-acylation turnover is still limited at the protein level. Herein, aiming to site-specifically profile both the heterogeneity and the turnover of S-acylation, we first developed a site-specific strategy for intact S-acylated peptide analysis by introducing an acid cleavable bioorthogonal tag into a metabolic labelling method (ssMLCC). The cleavable bioorthogonal tag allowed for the selective enrichment and efficient MS analysis of intact S-acylated peptides so that S-acylated sites and their attached fatty acids could be directly analysed, enabling the precise mapping of S-acylated sites, as well as circumventing false positives from previous studies. Moreover, 606 S-palmitoylated (C16:0) sites of 441 proteins in HeLa cells were identified. All types of S-acylated peptides were further characterized by an open search, providing site-specific profiling of acyl chain heterogeneity, including S-myristoylation, S-palmitoylation, S-palmitoleylation, and S-oleylation. Furthermore, site-specific monitoring of S-palmitoylation turnover was achieved by coupling with pulse-chase methods, facilitating the detailed observation of the dynamic event at each site in multi-palmitoylated proteins, and 85 rapidly cycling palmitoylated sites in 79 proteins were identified. This study provided a strategy for the precise and comprehensive analysis of protein S-acylation based on intact S-acylated peptide analysis, contributing to the further understanding of its complexity and biological functions.

Impact assessment of the effects of the former uncontrolled landfill of Sidi Yahya Oujda (Morocco) on groundwater using physicochemical, geological and electrical triple approaches

This study is part of the geophysical mapping of the former site of the uncontrolled Sidi Yahya Oujda landfill. It also aims to show the contribution of the integrated interpretation of geological and geophysical data in the diagnosis of illegal dump sites. The application was made on the rehabilitated site of the former uncontrolled Oujda landfill located in Sidi-Yahya, which was closed in 2005. Geological and geophysical studies by electrical resistivity tomography (TRE) were carried out at the site level. Nine 475 m long TRE profiles with an investigation depth of up to 110 m were generated to image the subsoil. Analysis of the physicochemical and metallic composition of the leachate from this site and the groundwater taken from 3 nearby wells revealed significant pollution of the leachate with a COD of 12780 mg. O2/L and a BOD5 of 525.34 mg. O2/L. The groundwater had high electrical conductivity (average of 3.9 mS/cm), chloride content (710 mg/L average) and nitrate content (74.62 mg/L average). The metal concentrations in the leachate and groundwater far exceeded the Moroccan standards, with high average values for zinc (619.22 μg/L), copper (318.12 μg/L), nickel (233.76 μg/L), chromium (169.16 μg/L), L) and iron (12940 μg/L). Geologically, a context was highlighted with lateral lithological variations and the presence of faults. The waste/leachate layer has low resistivity values (<10 Ω m) and a thickness of up to 25 m. It rests on terrains of different geological natures. In the southern part of the site, there is a layer of red clay with a thickness of up to 50 m and low resistivities (<10 Ω m), which overlies a layer of limestone with high resistivity values (>100 Ω m). In the northern part, we encounter a discontinuous and thin layer of fractured dolomites with resistivities greater than 50 Ω m. This layer of dolomite rests on a layer of clays.

Design Science Research for Developing Risk Tourism Mapping Based on Visitor Sentiment Review

Real-time monitoring and assessment procedures at tourism sites are crucial. The lack of it may caused an operational incident. Therefore, this study aims to develop a design science research (DSR) methodology to produce an artifact in the form of a risk mapping system that can display a map of tourism sites in an urban area based on their risk group. The DSR approach has five stages to develop artifacts: explicate problem, define requirements, design and develop artifacts, demonstrate it, and evaluate it. The findings of this study propose suitable research strategies to develop artifacts based on relevant knowledge bases. It also discusses in depth the implementation of the explicate problem stage, which involves observing the root causes of operational accidents at tourism sites. It also finds that real-time monitoring of tourism sites can prevent accidents, and proposes utilizing reviews from visitors on Google Review, which can be categorized through text mining to identify risk factors based on Sapta Pesona's framework. This study provides valuable insights for developing monitoring systems in the field of tourism risk management using visitor review texts as an open-source resource.

Exploring glycated sites in human serum albumin: impact of sample processing techniques on detection and analysis.

Glycation and the subsequent formation of advanced glycation end products (AGEs) disrupt and impair the physiological functions of proteins. This study presents a comprehensive glycation site mapping of human serum albumin (HSA) utilizing liquid chromatography-tandem mass spectrometry (LC-MS/MS). Both in vitro glycation experiments and patient samples were investigated, exploring various enzymes, processing techniques, and their impacts on glycation site detection. A pilot study was conducted, analyzing sixteen serum samples, which spanned from healthy individuals to severe diabetic patients (with HbA1c values ranging from 5.7% to 18.1%). The aim was to comprehend the progression of glycation on various sites of HSA with increasing levels of glycation. Their glycated albumin levels (GA) spanned from 19.7% to 62.3%. Trypsin-mediated proteolytic digestion unveiled 12 glycation sites through direct in-solution digestion of whole serum. However, isolating albumin from serum enabled the identification of a higher number of glycation sites in each sample compared to direct serum digestion. Boronate affinity chromatography facilitated the segregation of less glycated albumin (LGA) from the more glycated albumin (MGA) fraction. Subsequent proteolytic digestion of both LGA and MGA samples revealed similar glycation sites. The MGA fraction exhibited a greater number of identified glycation sites, thereby elucidating which sites are particularly prone to glycation in highly glycated albumin samples. Changes in relative glycation levels were noted in the tryptic digests of albumin samples following the sample enrichment steps, as opposed to direct in-solution digestion of whole serum. Two enzymes, trypsin and Glu-C, were evaluated for efficacy in sequence coverage and glycation site analysis of HSA, with trypsin demonstrating superior efficiency over Glu-C.

Наскальные рисунки местонахождения Идрисовская II. Методы цифрового картографирования и документирования

Petroglyphs at Idrisovskaya II are located on the left (Western) bank of the Yuryuzan River in Salavatsky District, the Republic of Bashkortostan. The Petroglyphs at Idrisovskaya II are hardly preserved. Therefore, the 1900s researchers faced significant challenges in defining and copying these images. In 2022-2023 a team of authors undertook to study Idrisovskaya II location to mainly adapt the method of comprehensive mapping and record creation for the location of petroglyphs specifically for the Southern Urals conditions. The approach to the record creation was in the first place based reflection relations between heterogeneous data that describe particular surfaces with paintings on them and their landscape context. Mapping of the landscape context and surfaces with petroglyphs was made with 3D modelling and a wide use with satellite geodesic technologies. The outcomes of the landscape context mapping of the petroglyphs location allowed to precisely determine coordinates of the surface and, as a consequence, to guarantee further rediscovery of the images, including non-figurative ones. At the same time, the site mapping results allowed re-indexation of the petroglyph-bearing surfaces. Records of the painted surfaces were also made using 3D modelling. It allowed to correctly reproduce the geometry of the images and avoid angle distortions, Such distortions are unavoidable in photography. Furthermore, 3D modelling allows to avoid damage to the images which often happens due to contact copying methods. Traces of mineral paints were determined through conversion of 3D model bitmap rendering with the decorrelation stretch algorithm. The study used 3 to 5 renders calculated with different methods. The extracted pixels were joined; the obtained image was assigned the pigment colour determined by the active sensor (spectral colorimeter) and classified with according to the Munsell scale. The data obtained in this manner were applied to the 3D model colourless render to form an image. This image s compatible with polygraphic and electronic publication. A complex of above-mentioned inter-related methods and techniques for mapping, record creation, systematization, data analysis and reproduction allow to create a complete digital image of the location of petroglyphs and to obtain the new data of the drawings. Further this digital image becomes the foundation both for publication of the petroglyphs and for comparative research of petroglyphs in different locations based on the reliable basic data.

이동보조기기 수리서비스 플랫폼 구축에 관한 연구

Objective : This study was conducted to investigate the components necessary to build a mobility devices repair service platform to provide various information related to mobility devices repair and to support rapid repair.
 Methods : In order to analyze the current status and requirements for repairing mobility devices, we conducted focus group interviews with people with disabilities who use mobility devices in October 2022, and analyzed the navigation structure and UI through the platform site maps of five organizations providing repair services in Korea and abroad. Results : In the focus group interviews, there was a demand for quick and convenient repair support services and various information provision. As a result of analyzing the repair service platform, we derived principles such as UI/UX design to make the platform more accessible, a repair service structure that can provide emergency dispatch services quickly, and a structure that can provide various information, and based on these, we prepared a plan for building the platform. Conclusion : In order to meet the various needs for mobility devices repair services, a quick and convenient repair service platform should be built based on PC or App, and a specific system should be established to ensure the right to mobility of people with disabilities.

From Perpetual Wetness to Soil Chemistry: Enumerating Environmental and Physicochemical Factors Favoring Oncomelania hupensis quadrasi Snail Presence in the Municipality of Gonzaga, Cagayan, Philippines.

Snail control to complement mass drug administration is being promoted by the World Health Organization for schistosomiasis control. Oncomelania hupensis quadrasi, the snail intermediate host of Schistosoma japonicum in the Philippines, has a very focal distribution; thus, scrutinizing baseline data and parameters affecting this distribution is very crucial. In this study in Gonzaga, Cagayan, Philippines, snail habitats were surveyed, and the various factors affecting the existence of the snails were determined. Malacological surveys and the mapping of sites of perpetual wetness in five endemic and five neighboring non-endemic barangays were conducted. Environmental and physicochemical factors were also examined. Maps of both snail and non-snail sites were generated. Of the fifty sites surveyed, O. h. quadrasi were found in twelve sites, and two sites yielded snails that were infected with S. japonicum cercariae. Factors such as silty loam soil, proximity to a snail site, water ammonia, and soil attributes (organic matter, iron, and pH) are all significantly associated with the presence of snails. In contrast, types of habitats, temperatures, and soil aggregation have no established association with the existence of snails. Mapping snail sites and determining factors favoring snail presence are vital to eliminating snails. These approaches will significantly maximize control impact and minimize wasted efforts and resources, especially in resource-limited schistosomiasis endemic areas.