Major Species Research Articles

Exploring the Differences in Tree Species Classification between Typical Forest Regions in Northern and Southern China

Focusing on the trend of continuously seeking high-precision tree species classification results in small areas from the perspectives of sensors and classification algorithms. This study aimed to explore the effects of data sources, classifiers, and seasons on classification accuracy in regions with significant environmental variation, examining patterns of tree species classification to enhance the transferability of classification. Considering two typical forest distribution regions in the north and south of China, this study utilized the revisitation cycle and open-source advantages of Sentinel-2 and Landsat-8. Leveraging the Google Earth Engine (GEE) platform, this study captured spectral features, vegetation indices, and texture features for single seasonal and seasonal combination images. With the assistance of Sentinel-1A and SRTM (Shuttle Radar Topography Mission) DEM (Digital Elevation Model), backscattering coefficient features and topographical features were extracted and input with features captured from Sentinel-2 and Landsat-8 into three types of classifiers: random forest (RF), support vector machine (SVM), and gradient tree boosting (GTB) for major tree species classification. In this research, we discovered that the best classification for single season in the northern study area was spring, whereas, for the southern study area, it was winter. Seasonal combination images effectively improved the classification accuracy of single seasonal images, with Sentinel-2 imagery displaying better classification performance compared to Landsat-8, and the optimal classifier differing between the north and the south. The inclusion of topographical or backscattering coefficient features in the four-season combination imagery contributed to improvements in classification accuracy, with topographical features significantly enhancing the classification performance in the topographically varied southern study area. The evaluation of feature importance indicated that elevation was the most critical feature for classification, while spectral features and vegetation indices were also significant. In the southern study area with large topographical discrepancies, subdividing into different terrain units led to improved tree species classification accuracy in medium-altitude, gentle slope areas. These findings provide insights into the regularity of enhancing tree species classification accuracy in environmentally diverse areas through the use of multi-source remote sensing data and multi-seasonal imagery. Consequently, the results offer a reference for the identification of tree species across large areas and the creation of spatial distribution maps.

Detection and Antimicrobial Susceptibility of Candida Species Isolated from the Urine of Patients in a Tertiary Health Facility, Southwest Nigeria

Aims: This study aimed to identify and determine the antimicrobial susceptibility profiles of Candida species causing UTI among patients attending a tertiary Teaching Hospital, in southwest Nigeria. Study Design: Comparative cross-sectional study. Place and Duration of Study: Lagos State University Teaching Hospital, Ikeja, Nigeria between June 2017 and February, 2018. Methodology: A total of 250 participants whose provisional diagnosis was candiduria were recruited for this study. Urine samples were collected from consenting participants early in the morning into sterile wide mouth universal containers. These samples were cultured aerobically on Blood agar, Cystine-Lactose-Electrolyte Deficient (CLED) agar and Sabouraud dextrose agar (SAB) at 370C within 1 to 2 days. The isolates were profiled into species level using microscopic, biochemical test, chromogenic media (Chrom agar Candida) and Analytical Profile Index (API) 32C examination analysis. Results: An overall rate for Candidiasis in this study was 12.8% (32/250). The rate was higher in female 17.5% compared to 6.5% in their male counterparts (p=0.014). Highest rate of infections peaked at 28.6% among age group 83-92 years and lowest (6.7%) in age group 23-32 years. A total of 11 (4.4%) urine culture from participants produced C. albicans pure fungi isolates. However, by gender, this was statistically significant (p=0.003). A total of 81 bacterial (32.4%) and fungal isolates 32 (12.8%) were isolated and profiled. Distribution of Candida species indicated highest incidence in age range 31-40 years, followed by 21-30years and age 61-70 years age brackets. The isolated species were Candida albicans 11(34.4%), C. tropicalis 8(25%), C. parapsilopsis 6(19%), C. krusei 2(6.3%) and C. hellenica 1(3.1%). Sixty to seventy percent of fungal isolates were susceptible to ketoconazole and fluconazole while the susceptibility pattern of Candida species to itraconazole, terbinafine and nystatin varied between moderately susceptible to resistance. All the Candida isolates were resistant to griseofulvin. However, C. albicans was found to be the major Candida species causing Candidal urinary tract infection. The only C. hellenica isolated was resistant to all the antifungal drugs were approved except nystatin. Conclusion: High profile of Candida isolates and related UTI microbes were found in this study. There is need for advocacy for the use of API and Chrom agar Candida for routine diagnosis for Candida identification. Nevertheless, the Candida isolates were mostly susceptible to ketoconazole and Fluconazole but only the isolates were griseofulvin resistant.

Secreted dengue virus NS1 from infection is predominantly dimeric and in complex with high-density lipoprotein

Severe dengue infections are characterized by endothelial dysfunction shown to be associated with the secreted nonstructural protein 1 (sNS1), making it an attractive vaccine antigen and biotherapeutic target. To uncover the biologically relevant structure of sNS1, we obtained infection-derived sNS1 (isNS1) from dengue virus (DENV)-infected Vero cells through immunoaffinity purification instead of recombinant sNS1 (rsNS1) overexpressed in insect or mammalian cell lines. We found that isNS1 appeared as an approximately 250 kDa complex of NS1 and ApoA1 and further determined the cryoEM structures of isNS1 and its complex with a monoclonal antibody/Fab. Indeed, we found that the major species of isNS1 is a complex of the NS1 dimer partially embedded in a high-density lipoprotein (HDL) particle. Crosslinking mass spectrometry studies confirmed that the isNS1 interacts with the major HDL component ApoA1 through interactions that map to the NS1 wing and hydrophobic domains. Furthermore, our studies demonstrated that the sNS1 in sera from DENV-infected mice and a human patient form a similar complex as isNS1. Our results report the molecular architecture of a biological form of sNS1, which may have implications for the molecular pathogenesis of dengue.

Identification of main variables in forest management for recovery of endemic species habitat in burned areas of southern Chile

Wildfires are among the most serious disturbances that affect forest biodiversity, damaging both flora and fauna. In some burned areas, vegetation recovery is a long and complex process that requires the support of restorative actions. This study evaluated changes in forest structural features after a fire that affect habitat suitability for Rhinocryptids, an endemic group of bird species that are indicators of biodiversity in the temperate forests of South America. The study area was the Malleco National Reserve, Chile, where the main ecosystems are temperate forests. Four species from the Rhinocryptidae family of birds were used as bioindicator species. This group of species is endemic to temperate forests in South America. After fires occurred in 2002 and 2015, affecting temperate forests dominated by several Nothofagus species, two field inventories were carried out in 2016 and 2018. These inventories recorded the presence of Rhinocryptids and some forests structural features. Differences between the two stages of forest regeneration were assessed using statistical tests (T-test and Wilcoxon–Mann–Whitney test) and a classification model was proposed to determine the presence of Rhinocryptidae species. The statistical analysis of forest structural features showed that the variables more relevant in the habitat recuperation are vertical stratification (p-value < 0.001) and understory cover (p-value = 0.053). The trained decision tree to predict the presence of Rhinocryptidae species had an accuracy of 65.22%. This model showed that the coexistence of more than one Rhinocryptidae species occurs when vertical stratification is not mono-stratified and the density is lower than 335 trees ha−1. Our results can help forest managers to consider forest structure as a suitable habitat for certain major wildlife species when implementing post-fire recovery plans.

The anesthesiologist's guide to swine trauma physiology research: a report of two decades of experience from the experimental traumatology laboratory.

Swine are one of the major animal species used in translational research, with unique advantages given the similar anatomic and physiologic characteristics as man, but the investigator needs to be familiar with important differences. This article targets clinical anesthesiologists who are proficient in human monitoring. We summarize our experience during the last two decades, with the aim to facilitate for clinical and non-clinical researchers to improve in porcine research. This was a retrospective review of 337 swine with a mean (SD) weight 60 (4.2) kg at the Experimental Traumatology laboratory at Södersjukhuset (Stockholm south general hospital) between 2003 and 2023, including laboratory parameters and six CT-angiography examinations. Swine may be ventilated through the snout using a size 2 neonatal mask. Intubate using a 35cm miller laryngoscope and an intubating introducer. Swine are prone to alveolar atelectasis and often require alveolar recruitment. Insert PA-catheters through a cut-down technique in the internal jugular vein, and catheters in arteries and veins using combined cut-down and Seldinger techniques. Cardiopulmonary resuscitation is possible and lateral chest compressions are most effective. Swine are prone to lethal ventricular arrhythmias, which may be reversed by defibrillation. Most vital parameters are similar to man, with the exception of a higher core temperature, higher buffer bases and increased coagulation. Anesthesia methods are similar to man, but swine require five times the dose of ketamine. Swine share anatomical and physiological features with man, which allows for seamless utilization of clinical monitoring equipment, medication, and physiological considerations.

Analysis of Distribution and Drug Susceptibility Test Results of Pathogenic Bacteria in Diabetic Foot Ulcers.

This study aimed to determine the pathogen distribution and drug susceptibility of diabetic foot wound secretions in a tertiary hospital in a coastal area of southeastern China to guide clinical antibiotic selection. A retrospective analysis was conducted on 212 patients with diabetic foot hospitalized at Xiamen Third Hospital from 2018 to 2023, and foot wound secretions were collected for microbial culture and drug susceptibility testing. Among 212 cases of patients with diabetic foot wound secretions, 163 cases (76.9%) were cultured with pathogenic bacteria, and a total of 207 strains of pathogenic bacteria were cultured, including 75 strains (36.23%) of Gram-positive (G+) bacteria, 118 strains of Gram-negative (G-) bacteria (57.00%), 14 strains of fungi (6.76%), 120 cases of single microorganism infection (73.62%), 43 cases of mixed infection (26.38%), and 15 strains of multidrug-resistant bacteria (7.25%). The top three pathogenic bacteria were Staphylococcus aureus, Klebsiella pneumoniae, and Pseudomonas aeruginosa. G+ bacteria were dominated by S.aureus. Drug susceptibility results showed that G+ bacteria were highly susceptible to vancomycin, linezolid, tigecycline, quinupristin/dalfopristin, rifampicin, and furotoxin, and somewhat resistant to penicillin, erythromycin, clindamycin, and cefoxitin. Among G- bacterial infections, Klebsiella pneumoniae, Pseudomonas aeruginosa, Escherichia coli, and Proteus were the major species. Drug susceptibility testing indicated that carbapenems such as imipenem and ertapenem were the most effective antibacterial drugs against G- strains, followed by amikacin, piperacillin, and tazabactams to which these bacteria were also relatively sensitive, while resistance to penicillins and first-generation cephalosporins increased significantly. We isolated one strain of pathogenic bacteria from a Wagner grade1 ulcer, which was G+ bacteria. In Wagner grade2 ulcers, the distribution of pathogenic bacteria was mainly G+ bacteria. In Wagner grade3 and 4 ulcers, the distribution of pathogenic bacteria was mainly G- bacteria, and the increased rate of mixed infection was mainly due to mixed infection of G+ and G-. Two strains of pathogenic bacteria were isolated at Wagner grade5, which were mixed infections of G+ and G-. Pathogenic bacteria in diabetic foot wounds are predominantly G- bacteria, followed by G+ bacteria. As the Wagner ulcer grade increases, the distribution of pathogenic bacteria changes from G+ bacteria to G- bacteria, and the mixed infection rate increases. G+ bacteria are highly susceptible to vancomycin, linezolid, tigecycline, quinupristin/dalfopristin, rifampicin, and furotoxin, and somewhat resistant to penicillin, erythromycin, clindamycin, and cefoxitin. G- bacteria are more sensitive to the antimicrobial drugs ertapenem, imipenem, amikacin, piperacillin tazobactam, and have high resistance to penicillin and first-generation cephalosporins.

Experimental Combustion and Flame Characterization of a Chemical Looping-Based Oxidative Dehydrogenation Byproduct Fuel Mixture Containing High CO2 Dilution

Abstract This study investigates the combustion performance of a CO2-rich fuel mixture containing ethane and methane as active species using a constant volume combustion chamber. This fuel is obtained as a byproduct of a chemical looping-based oxidative dehydrogenation (Cl-ODH) process ethylene production. The byproduct gas mixture has 40.79% CO2, 39.49% ethane, and 4.88% methane by weight with other minor compounds. Using this fuel for energy extraction would improve the process efficiency of the ethane to ethylene conversion. After initial combustion modeling, the gas fuel mixture was reduced to just the major species: CO2, ethane, and methane. The mixture was then tested for flammability limits and combustion performance under spark-ignition conditions. Effects of ambient conditions like temperatures between 300 and 400 K with initial pressures from 1 to 10 bar were tested. The effects of stoichiometry were tested to understand flame velocities and heat release. The fuel mixture showed an overall reduced flame velocity compared to gasoline. Instability in combustion was believed to be caused by the dissociation of ethane under elevated conditions. At higher pressures, the flame produces lower cumulative heat release. Simulations were also performed using a model tuned to replicate the operations of the combustion chamber used in the experiments. Heat release and unburnt fuel mass data were calculated to identify the discrepancies in the combustion completeness at elevated pressures. The effects of CO2 quenching the flame coupled with the increased dissociation of the fuel species can lead to up to more than 75% of the fuel mixture being unburnt. Data from this study were used to modify a small-scale spark-ignition engine to use this fuel and produce usable energy.

13C-Stable isotope resolved metabolomics uncovers dynamic biochemical landscape of gut microbiome-host organ communications in mice

BackgroundGut microbiome metabolites are important modulators of host health and disease. However, the overall metabolic potential of the gut microbiome and interactions with the host organs have been underexplored.ResultsUsing stable isotope resolved metabolomics (SIRM) in mice orally gavaged with 13C-inulin (a tracer), we first observed dynamic enrichment of 13C-metabolites in cecum contents in the amino acids and short-chain fatty acid metabolism pathways. 13C labeled metabolites were subsequently profiled comparatively in plasma, liver, brain, and skeletal muscle collected at 6, 12, and 24 h after the tracer administration. Organ-specific and time-dependent 13C metabolite enrichments were observed. Carbons from the gut microbiome were preferably incorporated into choline metabolism and the glutamine-glutamate/GABA cycle in the liver and brain, respectively. A sex difference in 13C-lactate enrichment was observed in skeletal muscle, which highlights the sex effect on the interplay between gut microbiome and host organs. Choline was identified as an interorgan metabolite derived from the gut microbiome and fed the lipogenesis of phosphatidylcholine and lysophosphatidylcholine in host organs. In vitro and in silico studies revealed the de novo synthesis of choline in the human gut microbiome via the ethanolamine pathway, and Enterococcus faecalis was identified as a major choline synthesis species. These results revealed a previously underappreciated role for gut microorganisms in choline biosynthesis.ConclusionsMulticompartmental SIRM analyses provided new insights into the current understanding of dynamic interorgan metabolite transport between the gut microbiome and host at the whole-body level in mice. Moreover, this study singled out microbiota-derived metabolites that are potentially involved in the gut-liver, gut-brain, and gut-skeletal muscle axes.1fG1mJvQp124HCbb2HZFdqVideo

EXPLORING THE IN‐SITU DEVELOPMENT OF A 1D/2D GADOLINIUM IRON OXIDE/TUNGSTEN DISULFIDE PHOTOCATALYST TO IMPROVE TETRACYCLINE DEGRADATION MEDIATED BY VISIBLE LIGHT

In the field of photocatalysis, heterojunction photocatalysts have garnered a lot of attention due to their high‐efficiency interfacial charge‐transfer property and their nanoarchitecture. Herein, GdFeO3/WS2is successfully synthesized by the in‐situ growth method and holds significant catalytic properties and efficient degradation for tetracycline. Using WS2 as a co‐catalyst could reduce e‐ and h+ recombination, improving GdFeO3's photocatalytic performance. The GdFeO3/WS2 possesses a bandgap of 1.9 eV, 178.9 m2 g−1 specific surface area, 0.2 nm pore size, and a lifespan of 6 ns. The optimal GdFeO3/WS2 photocatalyst exhibits a maximum removal of 96.2% at a tetracycline concentration of 10 mg/L, a pH of 3, and 40 mg of photocatalyst in an irradiation time of 90 min. Tetracycline has a higher photocatalytic efficiency in visible light (96.2%) than in sunlight (72.6%). Trapping tests revealed that the major reactive species for tetracycline removal in an aqueous solution are •OH, and •O2‐. The recycle experiment shows no deactivation of the GdFeO3/WS2 photocatalyst after 5 recycles. This study sheds light on the rational design of the GdFeO3/WS2 photocatalyst as a potential material for treating wastewater.

Small ruminant quality assurance (SRQA) – considerations and practices

There are multiple quality assurance programs in existence for livestock industries in the United States. This includes the Beef Quality Assurance program and Pork Quality Assurance Program. Although technically a Sheep Safety and Quality As­surance program does exist through the American Sheep In­dustry Association, it is not as nationally known or recognized compared to programs featuring major food animal species. No formal quality assurance programs exist for goats in the United States. This proceeding will discuss aspects of small ruminant (sheep and goat) management, preventive medicine and medi­cal treatment that influences quality assurance..

The first high-quality genome assembly and annotation of Lantana camara, an important ornamental plant and a major invasive species

This study presents the first annotated, haplotype-resolved, chromosome-scale genome of Lantana camara, a flowering shrub native to Central America and known for its dual role as an ornamental plant and an invasive species. Despite its widespread cultivation and ecological impact, the lack of a high-quality genome has hindered the investigation of traits of both ornamental and invasive. This research bridges the gap in genomic resources for L. camara, which is crucial for both ornamental breeding programs and invasive species management. Whole-genome and transcriptome sequencing were utilized to elucidate the genetic complexity of a diploid L. camara breeding line UF-T48. The genome was assembled de novo using HiFi and Hi-C reads, resulting in two phased genome assemblies with high Benchmarking Universal Single-Copy Orthologs (BUSCO) scores of 97.7%, indicating their quality. All 22 chromosomes were assembled with pseudochromosomes averaging 117 Mb. The assemblies revealed 29 telomeres and an extensive presence of repetitive sequences, primarily long terminal repeat transposable elements. The genome annotation identified 83,775 protein-coding genes, with 83% functionally annotated. In particular, the study mapped 42 anthocyanin and carotenoid candidate gene clusters and 12 herbicide target genes to the assembly, identifying 38 genes spread across the genome that are integral to flower color development and 53 genes for herbicide targeting in L. camara. This comprehensive genomic study not only enhances the understanding of L. camara’s genetic makeup but also sets a precedent for genomic research in the Verbenaceae family, offering a foundation for future studies in plant genetics, conservation, and breeding.

Conjugating HA bundles with ZIF-8 for catalytic degradation of tetracycline and antibacterial capacity

The overused of antibiotics had led to major environmental issues and drug-resistant bacteria, which inevitably harmed the environment and public health. In this work, in order to obtain environmentally friendly bi-functional materials to combat with residual antibiotics and bacterial contamination, ZIF-8, a typical Zn based zeolitic imidazolate framework (ZnZIF) with excellent chemical stability, was conjugated to hydroxyapatite nanowire bundles (HAnBs) by a simple in-situ synthesis. The obtained ZnZIFs@HAnBs was characterized by SEM, EDS, XPS, FT-IR, XRD and BET. The effects of catalysts, catalyst dosage, TC initial concentration, PMS concentration and pH on TC degradation were investigated. Notably, ZnZIFs@HAnBs (94.0 %) exhibited excellent degradation effect of tetracycline (TC) within 15 min, which was 1.7 and 5.2 times than that of ZIF-8 (55.9 %) and HAnBs (18.1 %) under optimal conditions, respectively. Moreover, after recycling 10 times, the degradation rate still more than 86.8 %. The degradation mechanism was confirmed by free radical quenching experiment coupling with electron paramagnetic resonance (EPR), and the 1O2 and O2•- were the major reactive oxygen species in TC degradation. Furthermore, it presented excellent antibacterial activity (95.0 %) against E. coli and S. aureus, which was attributed to the synergistic effect of sustained release of Zn2+ and phosphate in ZnZIF@HAnBs. In summary, an eco-friendly bi-functional materials of HA nanowire bundles could be synthesized by simple strategy, and it could be applied in the fields of environmental remediation, as well as in treatment of antibiotic and bacterial pollution.

Antibody engagement with amyloid-beta does not inhibit [11C]PiB binding for PET imaging.

The elimination of amyloid-beta (Aβ) plaques in Alzheimer's disease patients after treatment with anti-Aβ antibodies such as lecanemab and aducanumab is supported by a substantially decreased signal in amyloid positron emission tomography (PET) imaging. However, this decreased PET signal has not been matched by a similar substantial effect on cognitive function. There may be several reasons for this, including short treatment duration and advanced disease stages among the patients. However, one aspect that has not been investigated, and the subject of this study, is whether antibody engagement with amyloid plaques inhibits the binding of amyloid-PET ligands, leading to a false impression of Aβ removal from the brain. In the present study, tg-ArcSwe mice received three injections of RmAb158, the murine version of lecanemab or phosphate-buffered saline (PBS) before the administration of the amyloid-PET radioligand [11C]PiB, followed by isolation of brain tissue. Autoradiography showed that RmAb158- and PBS-treated mice displayed similar [11C]PiB binding. Moreover, the total Aβ1-40 levels, representing the major Aβ species of plaques in the tg-ArcSwe model, as well as soluble triggering receptor on myeloid cells 2 (sTREM2) levels, were similar in both groups. Interestingly, the concentration of soluble Aβ aggregates was decreased in the RmAb158-treated group, along with a small but significant decrease in the total Aβ1-42 levels. In conclusion, this study indicates that the binding of [11C]PiB to Aβ accurately mirrors the load of Aβ plaques in the brain, aligning with how amyloid-PET is interpreted in clinical studies of anti-Aβ antibodies. However, early treatment effects on soluble Aβ aggregates and Aβ1-42 levels were not detected.

Pigs in southern Italy are exposed to three ruminant pathogens: an analysis of seroprevalence and risk factors analysis study

BackgroundPigs are susceptible to several ruminant pathogens, including Coxiella burnetti, Schmallenberg virus (SBV) and bovine viral diarrhea virus (BVDV). These pathogens have already been described in the pig population, although the dynamics of the infection and the impact on pig farms are currently unclear. The aim of this work was to evaluate the presence of these infections in the pig population of the Campania region, southern Italy, and to evaluate the risk factors associated with a greater risk of exposure.ResultsA total of 414 serum samples belonging to 32 herds were tested for the presence of antibodies against SBV, Coxiella, and BVD using commercial multispecies ELISA kits. SBV (5.3%) was the most prevalent pathogen, followed by Coxiella (4.1%) and BVD (3%). The risk factors included in the study (age, sex, province, farming system, ruminant density and major ruminant species) had no influence on the probability of being exposed to BVD and Coxiella, except for the location, in fact more pigs seropositive to Coxiella were found in the province of Caserta. However, the univariate analysis highlighted the influence of age, location, and sex on exposure to SBV. The subsequent multivariate analysis statistically confirmed the importance of these factors. The presence of neutralizing antibodies for SBV and BVDV, or antibodies directed towards a specific phase of infection for Coxiella was further confirmed with virus-neutralization assays and phase-specific ELISAs in a large proportion of positive samples. The presence of high neutralizing antibody titers (especially for SBV) could indicate recent exposures. Twelve of the 17 positive samples tested positive for antibodies against Coxiella phase I or II antigens, indicating the presence of both acute and chronic infections (one animal tested positive for both phases antibodies).ConclusionsOur study indicates a non-negligible exposure of pigs from southern Italy to the above pathogens. Further studies are necessary to fully understand the dynamics of these infections in pigs, the impact on productivity, and the public health consequences in the case of Coxiella.

Computational analysis of 16D10 effector peptides from root-knot nematodes and their interaction with Mi resistance (R) protein through molecular docking

Plant-parasitic nematodes, especially root-knot nematodes (RKNs), pose significant threats to global agriculture, affecting both the quantity and quality of crop yields. Central to the parasitism strategy of RKNs is the deployment of effector proteins, such as the 16D10 peptide, which interact with host plant resistance mechanisms. This study focuses on the computational analysis and molecular docking of 16D10 effector peptides derived from major RKN species (M. incognita, M. arenaria, M. hapla, M. javanica, and M. chitwoodi) to explore their interaction with the Mi resistance protein in tomatoes. Initial bioinformatics assessments included sequence retrieval, multiple sequence alignment, and phylogenetic analysis, utilizing tools such as CLUSTALW and the MEME Suite. Notably, our phylogenetic analysis revealed a close evolutionary relationship between M. incognita and M. chitwoodi, contrasting with other RKN species based on both DNA and protein data. Subsequent, in silico 3D modeling and docking studies, conducted using Chem-Sketch and MOE software, provided insights into the structural basis of the interaction between 16D10 peptides and the Mi protein. Our findings indicate that these interactions could play a crucial role in the modulation of plant defense mechanisms, potentially leading to effector-triggered susceptibility (ETS). This study not only enhances our understanding of nematode-host interactions but also aids in the development of novel strategies for managing RKN infections in economically important crops.

Determination of Microplastics in Omega-3 Oil Supplements.

Microplastics (MPs) are ubiquitous in the environment, posing a threat to ecosystems and causing increasing concerns regarding their impacts on the human body through exposure. However, there has been limited research on the presence of MPs in functional foods, despite them being consumed for health improvement. This study aimed to investigate MP occurrence in various omega-3 oils and oil products in the Korean market and its relation to the source of raw material or manufacture. MPs were investigated in omega-3 capsules and raw oil, sourced from both plant-based (PB) and animal-based (AB) sources. We developed a method of direct filtration with acetone washing for collecting and characterizing MPs larger than 5 μm using micro-Raman spectroscopy. The average number of MPs by mass was found to be 1.2 ± 1.7 MPs/g for PB raw oil, 2.2 ± 1.7 MPs/g for AB raw oil, 3.5 ± 3.9 MPs/g for PB capsule oil, and 10.6 ± 8.9 MPs/g for AB capsule oil. Polypropylene and polyethylene terephthalate were the major MP species (83-95%) found in omega-3 oil. The proportions based on size range remained consistent across all groups, with a trend of being detected at higher rates as the size decreased. The results reveal that the main reason for the MP contamination of omega-3 oil is not the source of raw material but the manufacturing and packaging process.

Variations of the soil macrofauna community and corresponding influencing factors in the newly reclaimed coastal area: A case study in Yangtze Estuary, China

Intensive reclamation activity has reshaped global coastal ecosystems. Soil macrofauna, an effective proxy for ecosystem health, has the potential to predict coastal reclamation ecological impact. Previous studies have primarily focused on the long-term (≥ 30 years) soil macrofaunal succession in reclaimed areas. However, composition of the soil macrofauna and its environmental drivers in newly reclaimed areas (< 30 years) remain uncertain. We selected Hengsha Dongtan in the Yangtze Estuary to conduct the study, and four different regions (reclaimed for 13, 8, 4, and 1 year, respectively) were employed to investigate soil macrofaunal composition and corresponding environmental drivers. The results showed that: (1) Terrestrial species millipedes (Paradoxosomatidae sp.), chinch bugs (Dimorphopterus spinolae), and wolf spiders (Pirata subpiraticus) were dominant. Millipedes, chinch bugs, wolf spiders, ants (Myrmecina sp.), and rove beetles (Stenus melanarius and Paederus fuscipes) were major species contributing to the average dissimilarity among regions. (2) The taxonomic composition of soil macrofauna varied over time after reclamation, which showed that the number of species, density, and biomass of soil macrofauna in region 1 (reclaimed for 13 years) was higher than that in regions 2, 3, and 4 (reclaimed for 8, 4, and 1 year). (3) The functional composition of soil macrofauna varied over time after reclamation. The number of species, density, and biomass of the phytophagous and saprophagous groups increased over time, whereas those of the predatory group decreased gradually. (4) Soil pH and total organic carbon content, together with land use, appeared to be key factors that determine soil macrofaunal composition. Overall, our study illustrates the response of soil macrofauna to changes in environmental factors and land use in newly reclaimed areas. Future studies should expand the range of potential factors and comprehensively analyze the mechanisms that maintain soil macrofaunal diversity in reclaimed areas.

211 Analysis of microbial communities from a commercial-size swine manure pit and their association with production of volatile organic compounds

Abstract Global pollution and emission concerns have been linked to concentrated animal feeding operations (CAFOs). Indeed, the U.S Environmental Protection Agency (US EPA) warns that there is a significant danger to human health, soil, and water quality from CAFOs. Volatile organic compounds (VOCs), which are amongst air contaminants that pose a serious risk, are abundantly produced in swine manure pits. While VOC emissions from swine manure have been well studied, the microbial species responsible for their production remain mostly uncharacterized. Thus, a deeper comprehension of the microorganisms responsible for VOC production in swine manure pits may help in the development of management approaches that target the microbiome in these environments. In this context, this study aimed to identify the major bacterial species populating the manure pit of a commercial-size swine wean-to-finish research facility. Manure collected from two sampling locations at different time points were analyzed using the 16S rRNA gene through PCR-amplification of the V1-V3 regions from microbial genomic DNA, followed by Illumina MiSeq 2X300 sequencing. An analysis of the most highly represented microorganisms identified 24 bacterial Operational Taxonomic Units (OTUs), with only four showing a species-level nucleotide sequence identity to currently known or valid species. As these results indicated that the majority of bacterial species from this manure pit were unknown, a metagenomics approach was used to assemble partial to full length genomes from the two most abundant OTUs: Pit_9-00239 [5.09% - 19.44%; Clostridium saccharoperbutylacetonicum (96.60%)] and Pit_ 7-00035 [5.58% - 17.30%; Bacteroides eggerthii (87.66%)]. From genome assembly analysis, 979 contigs were generated for a combined length of 12,367,510 bp, which together included 21,776 coding sequences. Predicted metabolic functions from these contig sets included pathways involved in carbohydrate utilization (glycolysis), vitamin synthesis (riboflavin), and butyrate production (volatile fatty acids). Notably, an enzyme responsible for the production of indole, a common VOC produced from swine manure pits, was also identified. Together, the results from this analysis provide insights on metabolic capabilities of abundant bacterial species from manure pits. These can in turn be used for the future development of management strategies or products that can reduce VOC emissions that result from swine CAFO manure storage.

Understanding life cycle of parasitic weed Phelipanche ramosa infesting Brassica juncea in India: new host species and seed coat structure

ABSTRACT Broomrape (Phelipanche ramosa) is an obligate root parasitic plant that is known to infest many important crops. It is emerging as a serious biotic threat for Brassica juncea cultivation in India. There is very limited information available about broomrape species and its infestation in B. juncea. Hence, the present study encompassed a comprehensive five-year field survey spanning from 2018 to 2023 of 47 different B. juncea fields in the states of Rajasthan and Haryana in India. The level of broomrape infestation varied from season to season and field to field. In the B. juncea fields, broomrape with blue/violet color corolla, along with occasionally white color type were also noticed. The hairy anther, corolla shape and use of mitochondrial DNA-specific molecular markers revealed that both these broomrape types belong to Phelipanche ramosa. Scanning electron microscopy (SEM) analysis showed that P. ramosa seeds have varying shapes and seed coat have fibrillar periclinal cell wall. In addition to all the known host species for P. ramosa till date, we also identified a new host, a wild Brassicaceae weed species; Lepidium didymum in Haryana. The presence of an alternative weed host may help P. ramosa survive even in the absence of major crop host species. Overall, the present study revealed some insights into the P. ramosa-B. juncea host-parasite complex and its effect on B. juncea which could be further investigated in more detail.

Continuous production and recirculation of plasma‐activated water bubbles under different flow regimes for mixed‐species bacterial biofilm inactivation inside pipelines

AbstractBiofilm formation in broiler drinking water systems is a public health concern. Bacterial detachment from the pipes into the drinking water subsequently increases the risk of waterborne transmission and has detrimental effects on animal and human health. The study evaluated the antimicrobial effectiveness of plasma‐activated water bubbles (PAWBs) recirculated under different flow regimes against the mixed‐species biofilms of Salmonella Typhimurium ATCC13311 and Aeromonas australiensis 03‐09 grown on the inner surfaces of polyvinyl chloride (PVC) pipes. A benchtop pipeline model representing broiler drinker lines was developed to compare the biofilm inactivation efficacy of PAWB recirculated at different flow rates, corresponding to Reynold's number of 1000, 2500, and 4000. The synergistic mechanical and oxidative recirculation using PAWB resulted in a higher biofilm inactivation from the pipe walls as compared to recirculation using distilled water alone. Apart from the flow regimes, various parameters including the volume of PAWB circulated, the concentration of the major plasma reactive species, and treatment time affected the susceptibility of the mixed‐species biofilms to PAWB treatment. Under all tested conditions, the bacterial cells were below the detection limit of 1 log CFU/mL in water after PAWB treatments. A better understanding of the hydrodynamic variations prevalent in the drinking water system is important for designing an effective disinfection protocol using PAWB. The results obtained from the study provide important information on the use of PAWB for biofilm control strategies.