Artificial barriers are one of the most damaging anthropogenic factors, but are also socio-economic constructions, so the decision between removing a barrier and installing a fishway must be justified. The aim was to develop a system to quantify the amount of suitable habitat for migratory fish above barriers, to assess barriers’ passability, to prioritise them in current and historical terms and to take into account the impact of the reservoir in the selection of barrier management alternatives. For this purpose, the proportion of suitable area and the potential number of spawners were calculated separately for the flooded and free-flowing river sections above the barrier. The effect of the flooded area and fishway efficiency on the potential number of individuals was assessed and the historical importance of the areas above each barrier was evaluated. The results show that the proportion of suitable area in the total area above the barriers varies between 5 and 31%. Short river stretches of high habitat quality have a higher reproductive potential than much longer stretches of lower habitat quality. Dams with fishways can still be among the most negatively impacting barriers if they are located in the migration route of fish into a large part of the basin.