Low-level Contamination Research Articles

Nontoxic Concentration of Ochratoxin A Aggravates Renal Fibrosis Induced by Adriamycin/Cyclosporine A Nephropathy via TGF-β1/SMAD2/3.

Ochratoxin A (OTA) is the most common contaminant in food and feed, which causes nephrotoxicity. Studies revealed that a low level of OTA contamination could also cause physiological dysfunction. Chronic kidney disease (CKD) has become an important public health problem with increasing morbidity. However, the potential effect of nontoxic OTA on CKD remains uncertain. In this study, adriamycin (ADR) and cyclosporine A (CSA) were used to stimulate glomerular nephropathy and tubular nephropathy, respectively. Renal injury was aggravated due to OTA (0.25 mg/kg) exposure in the mouse nephropathy models, assessing by renal histomorphology and the detection of blood urea nitrogen (BUN) and serum creatine (SCr) levels. We noticed that nontoxic dosage of OTA increased the expression of fibrotic factors, α-smooth muscle actin (α-SMA), and Vimentin in a nephropathic mouse, which indicated the exacerbation of ADR/CSA-induced renal fibrosis. We conducted in vitro experiments in glomerular mesangial cells and renal tubular epithelial cells. Nontoxic concentration of OTA was found to exacerbate the cytotoxicity of ADR/CSA and intensify renal fibrosis by activating TGF-β1/SMAD2/3. Thus, this study may provide convincing evidence for the prevention of CKD aggravation and the renewal of food hygiene standards in mycotoxin contamination.

Characteristics and health risks of population exposure to phthalates via the use of face towels

The production of face towels is growing at an annual rate of about 4% in China, reaching 1.13 million tons by 2021. Phthalates (PAEs) are widely used in textiles, and face towels, as an important household textile, may expose people to PAEs via the skin, further leading to health risks. We collected new face towels and analyzed the distribution characterization of PAEs in them. The changes of PAEs were explored in a face towel use experiment and a simulated laundry experiment. Based on the use of face towels by 24 volunteers, we calculated the estimated daily intake (EDI) and comprehensively assessed the hazard quotient (HQ), hazard index (HI), and dermal cancer risk (DCR) of PAEs exposure in the population. PAEs were present in new face towels at total concentrations of <MDL–2388 ng/g, with a median of 173.2 ng/g, which was a lower contamination level compared with other textiles. PAE contents in used face towels were significantly higher than in new face towels. The concentrations of PAEs in coral velvet were significantly higher than those in cotton. Water washing removed some PAEs, while detergent washing increased the PAE content on face towels. Gender, weight, use time, and material were the main factors affecting EDI. The HQ and HI were less than 1, which proved PAEs had no significant non-carcinogenic health risks. Among the five target PAEs studied, DEHP was the only carcinogenic PAE and may cause potential health risks after long-term exposure. Therefore, we should pay more attention to DEHP.

Mode of Atmospheric Deposition in Forests Demonstrates Notable Differences in Initial Radiocesium Behavior.

The March 2011 Fukushima Dai-ichi Nuclear Power Plant accident in Japan released 520 PBq of radionuclides compared to a total release of 5300 PBq from the Chornobyl Nuclear Power Plant accident. Both nuclear accidents resulted in deposition of radiocesium throughout the northern hemisphere, and a plethora of studies have been performed regarding radiocesium (137Cs) behavior. However, few studies have assessed the impact of precipitation on 137Cs deposition in forests. Wide-scale environmental measurements from 2011 and 2016 were used to determine the differences in 137Cs deposition because of precipitation following the Fukushima accident. In areas where wet deposition processes were dominant, dense forests generally had lower ambient dose rates and levels of contamination on forest floors than other stands with fewer stems per hectare in 2011. Similar tendencies were not observed in areas that were primarily subject to dry deposition nor were any trends observed in 2016. 137Cs was retained in dense forest canopies for an extended period regardless of the deposition mode. Additionally, it was found that the initial retention of radionuclides by forest canopies is in general higher for areas with predominantly dry deposition. Incorporation of radiocesium into wood tissues was the same for both wet and dry deposition.

Insights and Applications of Composite Electroplating

Composite electroplating is the process of particle incorporation during the electrolytic deposition of metal. This process produces composite films consisting of a metallic matrix containing a dispersion of small particles. The advantages of composite electrodeposition over other coating methods are the uniformity of deposition even for complex shapes, the strong adhesion to the substrate, reduction of waste compared to dipping or spraying techniques, low levels of contamination, the ability to produce functionally-gradient material and to continuously process parts. In addition, this process avoids the problems associated with high temperature or vacuum processing.There are many contradictory experimental results in literature concerning the effects of the electrocodeposition process variables on particle incorporation. The effects of some of the process variables also vary for different particle-electrolyte combinations and cell configurations. Some of the reported contradictions are a direct consequence of incomparable hydrodynamics. The bulk of experimental electrocodeposition research has been conducted using a vertical parallel plate electrode set-up. In this configuration, the particles are maintained in suspension by either stirring the solution, vibrating a perforated plate at the bottom of the cell, bubbling gas, or pumping the suspension through the cell, all of which result in uncontrollable, and hence incomparable hydrodynamics. Other contradictions are due to the fact that the process parameters were evaluated only for a narrow range of experimental parameters and to differences in particle size and purity.This talk discusses the experimental results and mathematical modeling of electrocodeposition of particles in a metallic matrix. The effects of several key parameters, such as current density, particle loading, electrolyte composition, particle surface charge and polarity, on particle incorporation in electrodeposited composite coatings were studied and modeled. All experiments were done utilizing rotating disk electrodes over a wide range of experimental conditions in which the incorporation behavior changes appreciably, yielding reproducible data for better interpretation of process effects and modeling. These studies were combined with colloidal probe AFM experiments and process archeology using pulse plating which helped to understand the codeposition mechanism.

3M™ Petrifilm Yeast and Mold Count Plate for the Enumeration of Yeasts and Molds in Dried Cannabis Flower: AOAC Official MethodSM 997.02.

The 3M™ Petrifilm™ Yeast and Mold (YM) Count Plate is a sample-ready culture medium system that contains nutrients supplemented with antibiotics, a cold-water-soluble gelling agent, and an indicator system that facilitates yeast and mold enumeration. The 3M Petrifilm YM Plate was validated for enumeration of yeast and mold in dried cannabis flower through the AOAC Emergency Response Validation process. The performance of the 3M Petrifilm YM Plate was compared to that of Dichloran Rose Bengal Chloramphenicol (DRBC) agar. Matrix data were normalized by log10 transformation, and performance indicators included repeatability, difference of means, and inclusivity/exclusivity. These studies demonstrated that the 3M Petrifilm YM Plate method detects and enumerates yeasts and molds from cannabis flower at low, medium, and high contamination levels, and the average log counts at 20-25°C for 5 days were equivalent to the average log counts of the DRBC reference method. In strain studies, 59 out of 60 yeasts and molds produced typical colony morphology on 3M Petrifilm YM Plates. Of the nontarget bacterial strains tested, 38 out of 39 strains were not detected on 3M Petrifilm YM Plates. The 3M Petrifilm YM Plate is a reliable method for the enumeration of live yeast and mold in dried cannabis flower. The 3M Petrifilm YM Plate allows for detection of yeast and mold within 5 days of incubation. The sample-ready plates can be incubated at 20-25°C and can be stacked up to 20 plates, thus providing user flexibility and saving incubator space.

Bioaccumulation of PCDD/Fs and PCBs in free-range hens: Congener fingerprints and biotransfer factors

The bioaccumulation of lipophilic environmental contaminants in farm animals is an important issue to control and prevent human exposure to toxic pollutants. Free-range hens were used as a model to assess the transfer and the bioaccumulation of PCDD/Fs, DL-PCBs and NDL-PCBs from the soil to eggs in an area in the Campania region particularly affected by pollution, the “Land of Fires”. We determined the following ranges of concentrations in eggs: 0.90–5.51 pg WHO-TEQ g−1 fat for PCDD/Fs; 1.63–4.24 pg WHO-TEQ g−1 fat for DL-PCBs; 2.77–9.75 pg WHO-TEQ g−1 fat for the sum of PCDD/Fs and DL-PCBs and 12.53–30.94 ng g−1 fat for NDL-PCBs. Higher contamination levels were observed in the eggs from free-range hens, compared to those of the control group, that is hens raised indoors; this indicates that soil remains a major source of contamination. Livers showed low levels of contamination for both outdoor and indoor reared hens. Biotransfer factors (BTFs) were calculated for each of the 35 PCDD/F and PCB congeners analysed. The BTFs highlighted that the transfer and bioaccumulation depend on chlorination degree and substitution pattern, in particular they increase with increasing chlorination degree up to the hexa-chlorinated congeners and then decrease. An exception to these finding was observed for 2,3,7,8 TCDD and 2,3,7,8 TCDF, which showed very high BTFs. These results demonstrate the importance of promoting studies on the environmental contaminants bioaccumulation as they provide an effective support for the risk assessment and management of exposure to toxic chemicals.

Utility of an alternative method (to USEPA Method 1613) for analysis of priority persistent organic pollutants in soil from mixed industrial-suburban areas of Durban, South Africa.

This study evaluates the adequacy of a USEPA Method 1613 alternative analytical method for analysis of persistent organic pollutants (POPs) in soil from the immediate vicinity of industrialized areas in the eThekwini municipal area in South Africa. The objective of this study is in line with the Stockholm Convention Article 11 on research, development, and monitoring. Furthermore, it became imperative to find an alternative analytical procedure to USEPA Method 1613 that could cater to studies conducted in Africa where recent reviews have indicated that most African countries lack the technical and instrumental capacity for performing analysis of dioxin-like compounds according to USEPA Method 1613, which entails the use of high-resolution chromatography and high-resolution mass spectrometry instrumentation. The study aimed to ascertain the utility of an alternative two-dimensional gas chromatography-time of flight mass spectrometry method for analysis of trace-level priority POPs in soil, along with a fast single quadrupole gas chromatography-mass spectrometry method. The analytical methods were applied to the analysis of POPs on soil samples from industrial areas with oil refineries and a pulp and paper manufacturing company, while other samples were collected near the electricity substations and a landfill site. Analytical results showed BDE 209 as the dominant contaminating polybrominated diphenyl ether (concentration ranges from 0.006 to 5.71 ng g-1 ). Polybrominated biphenyls (PBBs) 9, 10, and 49 were the dominant PBBs detected in 78% of the sites tested, although their concentrations were below the limit of quantification (LOQ). Polychlorinated dibenzo-p-dioxins and furans and dioxin-like polychlorinated biphenyls detected could not be quantified above their respective LOQs, indicating that the Durban area has low priority pollutant contamination levels compared to other regions around the world. The methods developed are a starting point thatwill inform considerations for routine evaluation and management of soil contamination, which plays a vital role in environmental management. IntegrEnviron Assess Manag 2023;19:749-762. © 2022 SETAC.

Spatial-temporal distribution and pollution indices of heavy metals in the Turnasuyu Stream sediment, Turkey.

The potential contamination levels and human health risk of heavy metals in sediment of the Turnasuyu Stream in Ordu, Turkey, were evaluated comprehensively by taking seasonal samples from three different locations. The order of the mean heavy metals (HMs) concentrations (mg/kg) were as follows: Fe > Al > Mn > Pb > Zn > Cu > Co > Cr > Ni > Cd > As. All HM levels, except Cd and Pb, were in the minimum enrichment range as assessed by the sediment enrichment factor (EF). Similar low contamination levels for all HM, except Pb and Cd, were also observed when the contamination factor (CF) and geo-accumulation index (Igeo) were taken into account. The low risk of the study area has also been confirmed by the ecological risk index (Eri) values. The probable human health risk assessment has been performed, and the lifetime cancer risk (LCR) values for adults were found as negligible with values below 10-6. In addition, the hazard index (HI) and total hazard index (THI) results were both higher in children than in adults. The Pearson correlation coefficient (PCC) revealed the highest correlation between Cd and Pb (0.85). When the ecological indexes and statistical results are evaluated together, it is thought that the presence of HMs in the sediment may be due to lithological reasons as well as anthropogenic activities such as quarrying, municipal, agricultural, and domestic discharges in the region. Mitigation measures should be taken in accordance with the standards within the river basin to prevent the potential risks of pollution.

Assessment of contamination levels of heavy metals in the agricultural soils using ICP-OES

ABSTRACT This work was carried out to monitor contamination levels of twelve heavy metals (HMs) in the agricultural soils of Kafr El-Zayat city in Egypt. The concentrations of Mg, V, Cr, Mn, Fe, Co, Ni, Cu, Zn, As, Sr, and Pb were determined using inductively coupled plasma optical emission spectroscopy (ICP-OES). Contamination levels were estimated based on various geochemical parameters such as contamination factor (CF), enrichment factor (EF), geo-accumulation index (Igeo), degree of contamination (Cd ), and pollution load index (PLI). The results showed that the majority of investigated soil samples were moderately contaminated (1 ≤ CF < 3) with V, Cr, Co, Cu, Zn, and Sr and had low contamination levels (CF <1) with Mg, Mn, Fe, Ni, and Pb. All investigated elements had geo-accumulation indices smaller than zero indicating uncontaminated soil samples except for V which showed (0 < Igeo < 1) indicating uncontaminated to moderate pollution levels. All soil samples were found to have deficient to minimal enrichment for all investigated HMs based on the average values of EF (EF < 2). Cluster analysis (CA) and principal component analysis (PCA) revealed that HMs were clustered into three groups compromising As and V; Ni, Cr, Mn, Co, Fe, and Mn; and Pb, Cu, Sr, and Zn, which suggests the presence of different sources of pollution. The contribution of anthropogenic sources to V, Cr, Co, Cu, Zn, As, and Sr was estimated to be 45, 30, 26, 11, 23, 27, and 13% of the total metal content, respectively. In general, the investigated agricultural soil samples could be classified as moderately contaminated and polluted based on the Cd factor (Cd = 13.7), and the PLI (PLI = 1.1), respectively.

Effect of repeated intakes of a neonicotinoid insecticide on the foraging behaviours of Apis mellifera in field trials

Evaluating the effects of neonicotinoids on forager bees in conditions as near as possible to those in nature presents a considerable challenge. Tackling this challenge is, however, necessary to establish their negative side effects on these pollinators. For instance, it is still under debate the mechanism by which bees seem to recognize low-level contaminations of neonicotinoid insecticides in nectar and pollen of the flowers they visit and limit collection to protect themselves and their hive from a possible intoxication. In this study, we propose an experimental system that involves the use of foragers in free flight foraging repeatedly on artificial feeders containing a sucrose solution contaminated with clothianidin, as well as foragers feeding at adjacent control feeders, allowing us to observe changes in their foraging activity. The progressive disappearance of foragers from the contaminated feeders became increasingly clear and rapid with the increase in clothianidin concentration. The lowest concentration at which we observed an effect was around 10 µg/L, which corresponds to the maximum residual concentration (10 ng/g) observed in pollen and nectar of flowers close to open fields sown with seeds coated with insecticides. At the highest concentrations tested (80 µg/L), there was an almost total abandonment of the feeders. The estimated quantity of contaminated sucrose solution collected by foragers showed an almost linear relationship inversely proportional to clothianidin concentration, whilst the estimated quantity of insecticide collected by a forager increased and then stabilised at the highest concentrations tested of 40 and 80 µg/L. Irregular mortality was not observed in front of the hives, furthermore, foragers did not show evident memory of the position of the treated units in the trials on the 2 consecutive days. The decrease in foraging activity in the presence of a few µg/L of insecticide in the sucrose solution appears to limit the introduction of elevated amounts of toxic substances into the hives, which would have serious consequences for the young bees and the brood. At the same time, in the absence of an alternative energy source, even reduced feeding of the hive can compromise colony health.

Effects of pen faeces and feed contamination in biomarkers determination in oral fluid of pigs

The present study aims to evaluate the possible effects of the presence of pen faeces and feed on the measurement of a panel of biomarkers in porcine oral fluid. For this, clean porcine oral fluid was pooled and incubated with two different concentrations of pen faeces or feed representing a high or low level of contamination with each material. In addition, these pools were aliquoted and subjected to centrifugation, filtration or chemical clarification to evaluate if these techniques could revert the effects of those contaminants in biomarker evaluation. A panel of 21 biomarkers that assessed stress, inflammation, immune system and redox homeostasis among others, were measured for all aliquots. Changes of statistical relevance (p < 0.05) in oral fluid contaminated with pen faeces or feed versus untreated samples were observed for all methods employed with the exception of adenosine deaminase (ADA) and creatine kinase (CK) in oral fluid contaminated with pen faeces or feed. Pen faeces did not affect the measurement of haptoglobin, superoxide dismutase, CK, lactate dehydrogenase (LDH), ADA and cortisol (when the latter is measured by chemiluminescence); while uric acid, LDH, CK, ADA, and hydrogen peroxide methods were not affected by the presence of feed in oral fluid. The effects of centrifugation, filtration or chemical clarification with chitosan in these contaminated samples were modest and for most cases did not caused baseline levels on the measured biomarkers. In conclusion, the presence of pen faeces or feed in porcine oral fluid can interfere with the results obtained when analytes are measured.

Significance of chemical affinity on metal subcellular distribution in yellow perch (Perca flavescens) livers from Lake Saint-Pierre (QUEBEC, Canada)

The subcellular partitioning approach provides useful information on the location of metals within cells and is often used on organisms with high levels of bioaccumulation to establish relationships between the internal concentration and the potential toxicity of metals. Relatively little is known about the subcellular partitioning of metals in wild fish with low bioaccumulation levels in comparison with those from higher contaminated areas. This study aims to examine the subcellular partitioning of various metals considering their chemical affinity and essentiality at relatively low contamination levels. Class A (Y, Sr), class B (Cu, Cd, MeHg), and borderline (Fe, Mn) metal concentrations were measured in livers and subcellular fractions of yellow perch (n = 21) collected in Lake Saint-Pierre, QC, Canada. The results showed that all metals, apart from MeHg, were distributed among subcellular fractions according to their chemical affinity. More than 60% of Y, Sr, Fe, and Mn were found in the metal-sensitive fractions. Cd and Cu were largely associated with the metallothionein-like proteins and peptides (60% and 67% respectively) whereas MeHg was found mainly in the metal-sensitive fractions (86%). In addition, the difference between the subcellular distribution of Cu and other essential metals like Fe and Mn denotes that, although the essentiality of some metals is a determinant of their subcellular distribution, the chemical affinity of metals is also a key driver. The similarity of the subcellular partitioning results with previous studies on yellow perch and other fish species from higher contaminated areas supports the idea that metals are distributed in the cellular environment according to their chemical properties regardless of the bioaccumulation gradient.

Monkeypox virus contamination in an office-based workplace environment

Monkeypox virus contamination in an office-based workplace environment

Transmission of SARS-CoV-2 by children to contacts in schools and households: a prospective cohort and environmental sampling study in London

BackgroundAssessing transmission of SARS-CoV-2 by children in schools is of crucial importance to inform public health action. We assessed frequency of acquisition of SARS-CoV-2 by contacts of pupils with COVID-19 in schools and households, and quantified SARS-CoV-2 shedding into air and onto fomites in both settings.MethodsWe did a prospective cohort and environmental sampling study in London, UK in eight schools. Schools reporting new cases of SARS-CoV-2 infection to local health protection teams were invited to take part if a child index case had been attending school in the 48 h before a positive SARS-CoV-2 PCR test. At the time of the study, PCR testing was available to symptomatic individuals only. Children aged 2–14 years (extended to <18 years in November, 2020) with a new nose or throat swab SARS-CoV-2 positive PCR from an accredited laboratory were included. Incidents involving exposure to at least one index pupil with COVID-19 were identified (the prevailing variants were original, α, and δ). Weekly PCR testing for SARS-CoV-2 was done on immediate classroom contacts (the so-called bubble), non-bubble school contacts, and household contacts of index pupils. Testing was supported by genome sequencing and on-surface and air samples from school and home environments.FindingsBetween October, 2020, and July, 2021 from the eight schools included, secondary transmission of SARS-CoV-2 was not detected in 28 bubble contacts, representing ten bubble classes (participation rate 8·8% [IQR 4·6–15·3]). Across eight non-bubble classes, 3 (2%) of 62 pupils tested positive, but these were unrelated to the original index case (participation rate 22·5% [9·7–32·3]). All three were asymptomatic and tested positive in one setting on the same day. In contrast, secondary transmission to previously negative household contacts from infected index pupils was found in six (17%) of 35 household contacts rising to 13 (28%) of 47 household contacts when considering all potential infections in household contacts. Environmental contamination with SARS-CoV-2 was rare in schools: fomite SARS-CoV-2 was identified in four (2%) of 189 samples in bubble classrooms, two (2%) of 127 samples in non-bubble classrooms, and five (4%) of 130 samples in washrooms. This contrasted with fomites in households, where SARS-CoV-2 was identified in 60 (24%) of 248 bedroom samples, 66 (27%) of 241 communal room samples, and 21 (11%) 188 bathroom samples. Air sampling identified SARS-CoV-2 RNA in just one (2%) of 68 of school air samples, compared with 21 (25%) of 85 air samples taken in homes.InterpretationThere was no evidence of large-scale SARS-CoV-2 transmission in schools with precautions in place. Low levels of environmental contamination in schools are consistent with low transmission frequency and suggest adequate cleaning and ventilation in schools during the period of study. The high frequency of secondary transmission in households associated with evident viral shedding throughout the home suggests a need to improve advice to households with infection in children to prevent onward community spread. The data suggest that SARS-CoV-2 transmission from children in any setting is very likely to occur when precautions are reduced.FundingUK Research and Innovation and UK Department of Health and Social Care, National Institute for Health and Care Research

Crystal digital RT-PCR for the detection and quantification of norovirus and hepatitis A virus RNA in frozen raspberries

Berries are important vehicles for norovirus (NoV) and hepatitis A virus (HAV) foodborne outbreaks. Sensitive and quantitative detection of these viruses in food samples currently relies on RT-qPCR, but remains challenging due to their low concentration and the presence of RT-qPCR inhibitors. Moreover, quantification requires a standard curve. In this study, crystal digital RT-PCR (RT-cdPCR) assays were adapted from RT-qPCR sets of primers and probe currently used in our diagnostic laboratory for the detection and precise quantification of norovirus genogroups I and II (NoV GI, GII) and hepatitis A virus (HAV) RNA in frozen raspberry samples. We selected assay conditions based on optimal separation of positive and negative droplets, and peak resolution. Using virus-specific in vitro RNA transcripts diluted in raspberry RNA extracts, we showed that all three RT-cdPCR assays were sensitive, and we estimated the 95 % detection limit at 9 copies per RT-cdPCR reaction for NoV GI, 3 for NoV GII, and 14 for HAV. Serial dilutions of the RNA transcripts showed excellent linearity over a range of four orders of magnitude. We achieved precise quantification (CV ≤ 35 %) of the RNA transcripts between runs down to 15–145 copies per reaction for NoV GI, <20 for NoV GII, and < 15 for HAV. The three RT-cdPCR assays also proved to be tolerant to inhibitors from frozen raspberries, although not as tolerant as the RT-qPCR assays in the case of NoV GI and HAV. We further evaluated the assays with inoculated frozen raspberry samples and compared their performance to that of the RT-qPCR assays. As compared to the corresponding RT-qPCR assays, the NoV GI and HAV RT-cdPCR assays showed a decreased qualitative sensitivity, while the NoV GII RT-cdPCR assay had an increased sensitivity. As for quantification, the NoV GI and NoV GII RT-cdPCR assays produced similar estimates of RNA copy number than their respective RT-qPCR assays, whereas for HAV, the RT-cdPCR assay produced lower estimates than the RT-qPCR assay. However, all the RT-cdPCR assays provided more precise quantitative measurements at low levels of contamination than the RT-qPCR assays. In conclusion, the potential of the RT-cdPCR assays in this study to detect viral RNA from frozen raspberries varied according to assay, but these RT-cdPCR assays should be considered for precise absolute quantification in difficult matrices such as frozen raspberries.

Human Clinical Isolates of Pathogenic Fungi Are Host to Diverse Mycoviruses.

ABSTRACTFungi host viruses from many families, and next-generation sequencing can be used to discover previously unknown genomes. Some fungus-infecting viruses (mycoviruses) confer hypovirulence on their pathogenic hosts, raising the possibility of therapeutic application in the treatment of fungal diseases. Though all fungi probably host mycoviruses, many human pathogens have none documented, implying the mycoviral catalogue remains at an early stage. Here, we carried out virus discovery on 61 cultures of pathogenic fungi covering 27 genera and at least 56 species. Using next-generation sequencing of total nucleic acids, we found no DNA viruses but did find a surprising RNA virus diversity of 11 genomes from six classified families and two unclassified lineages, including eight genomes likely representing new species. Among these was the first jivivirus detected in a fungal host (Aspergillus lentulus). We separately utilized rolling circle amplification and next-generation sequencing to identify ssDNA viruses specifically. We identified 13 new cressdnaviruses across all libraries, but unlike the RNA viruses, they could not be confirmed by PCR in either the original unamplified samples or freshly amplified nucleic acids. Their distributions among sequencing libraries and inconsistent detection suggest low-level contamination of reagents. This highlights both the importance of validation assays and the risks of viral host prediction on the basis of highly amplified sequencing libraries. Meanwhile, the detected RNA viruses provide a basis for experimentation to characterize possible hypovirulent effects, and hint at a wealth of uncharted viral diversity currently frozen in biobanks.IMPORTANCE Fungal pathogens of humans are a growing global health burden. Viruses of fungi may represent future therapeutic tools, but for many fungal pathogens there are no known viruses. Our study examined the viral content of diverse human-pathogenic fungi in a clinical biobank, identifying numerous viral genomes, including one lineage previously not known to infect fungi.

Spatial Distribution, Potential Risks and Source Identification of Heavy Metals in the Coastal Sediments of the Northern Beibu Gulf, South China Sea.

Thirty samples of surface sediments (0–5 cm) from the northern Beibu Gulf were analyzed to determine the spatial distribution, potential risks and sources of six heavy metals (Cr, Cu, Zn, As, Cd and Pb). The concentrations (mg/kg, dw) of Cr, Cu, Zn, As, Cd and Pb were 15.38 ± 6.06, 6.54 ± 3.23, 41.86 ± 17.03, 6.92 ± 2.75, 0.04 ± 0.02 and 17.13 ± 6.38, respectively. Higher levels of Cr, Cu, Cd and Zn were observed in the western part of the study area. According to the potential ecological risk indexes and sediment quality guidelines, the measured metals were assessed at low contamination levels, with Pb posing the largest ecological risks. The results of positive matrix factorization (PMF) indicated that Cr and Zn mainly originated from natural geological background sources, while Cu, As, Cd and Pb were influenced by anthropogenic sources such as atmospheric deposition and anthropogenic activities. These three sources contributed 60.4%, 28.1% and 11.5% of the heavy metals, respectively. In addition, further research should be conducted focusing on the general relationships between As and various controls in sediments of the northern Beibu Gulf.

Potential of Plant Growth Regulators to Enhance Arsenic Phytostabilization by Pennisetum purpureum cv. Mott

The limited translocation of arsenic from contaminated soil to plant biomass is one way to decrease human exposure to arsenic (As). Plant growth regulators (PGR), including salicylic acid, indole butyric acid, and calcium, have been reported to alleviate toxicity and decrease the accumulation of heavy metals in many plants. Thus, this study has investigated the effect of plant growth regulators, including salicylic acid, salicylic acid + calcium chloride, indole butyric acid, and indole butyric acid + calcium chloride, to stimulate the growth and phytostabilization of Pennisetum purpureum cv. Mott grew in arsenic-spiked soil. The results showed shoot growth, root growth, and total chlorophyll content of P. purpureum cv. Mott grown in non-spiked soil were not significantly different from those grown in arsenic-spiked soil. Only the root-to-shoot ratio of plants grown under arsenic-spiked soil (0.28) was higher than that of non-spiked soil (0.19). Exogenous plant growth regulator application of each formula did not stimulate the growth of plants grown under both soil conditions. The most suitable plant growth regulator was indole butyric acid + calcium chloride, as the highest arsenic accumulation in plant roots was detected (47.38 mg/kg). It corresponds with the arsenic bioaccumulation factor, translocation factor, and efficiency, which were 4.52, 0.06, and 9.77% when using exogenously indole butyric acid + calcium chloride. Meanwhile, arsenic’s translocation factor and efficiency were low when using the other formulae of plant growth regulators. Thus, 0.001 mM indole butyric acid + 20 mM calcium chloride may be used for the cultivation of P. purpureum cv. Mott as a forage crop in areas with low levels of arsenic contamination because it could limit the amount of arsenic entering the food chain.

Microbial community metabolic alterations and resistance to metals and antibiotics driven by chronic exposition to multiple pollutants in a highly impacted tropical coastal bay

Microbial communities from Sepetiba Bay (SB, Rio de Janeiro, Brazil), characterized by 16S rRNA gene (V4–V5 region) sequencing analysis, were found to be correlated with the metallic contamination factor and the Quality Ratio (QR) index. Consistently, the predicted function of microbial communities, obtained with Tax4Fun2, showed that the functional patterns in SB internal sector under the highest anthropogenic pressure were different from that observed in the external sector with the lowest contamination level. Signal transduction, cellular community, membrane transport, and energy metabolism were among the KEGG pathways favored by metallic contamination in the SB internal sector, while lipid metabolism, transcription, and translation were among the pathways favored in the SB external sector. Noteworthy, the relative proportions of KEGG pathways and genes associated with metallic homeostasis showed significant differences according to the SB sectors, consistently with the ecological risk classification (QR index) of sediments. The functional prediction approach is an economically viable alternative and presents an overview of the main pathways/genes favored in the SB microbiota exposed to long-term pollution. In contrast, the microgAMBI, ecological status index based on bacterial community composition, was not consistent with the metallic contamination of SB, suggesting that this index requires improvements to be applied in tropical areas. Our study also revealed a strong correlation between metal resistance genes (MRG) and antibiotic resistance genes (ARG), indicating that MRG and ARG are co-selected by the metallic contamination prevailing in SB.

Hydrochemical appraisal of fluoride contamination in groundwater and human health risk assessment at Isa Khel, Punjab, Pakistan

Fluoride contamination in the groundwater of Pakistan is widespread with serious potential health consequences. We determine the groundwater of Isa Khel Tehsil upper Indus plain for drinking purposes and fluoride contamination by collecting 236 water samples from the water supply schemes supplied with groundwater. Results show that the majority of the parameters exceed the standard concentration of potable water. The concentration of fluoride ranges from 0.02 to 5.35 mg/L with an average of 1.8 mg/L, and about 58.5% of the collected samples have higher fluoride concentration than the allowed limit for drinking purposes. Fluoride pollution index results show that about 48.73% of samples have a high level of risk, 41.95% samples of the study area have medium level and only 9.32% of the water samples show low level of fluoride contamination. The health risk assessment due to fluoride contamination was computed based on chronic daily intake (CDI) and hazard quotient (HQ). For adult’s variation in CDI and HQ ranges from 0.001–0.15 mg/kg/day and 0.001–2.55 respectively whereas in children it ranges from 0.001–0.29 mg/kg/day and 0.02–4.84. Health risk assessment parameters indicate that in the case of adults, about 40.25% of samples exceeded the maximum allowed value of hazard quotient i.e., HQ > 1, while for children, about 66.95% of samples have HQ > 1, which means that children are at higher risk than adults because of higher vulnerability to fluoride contamination in drinking water. Thus, there is a need for effective groundwater monitoring and management in the study region to safeguard residents from various illnesses associated with drinking water with varying fluoride concentrations. • Worldwide in groundwater, fluoride contamination is becoming a challenge. • Higher fluoride level in drinking water cases dental and skeletal fluorosis at alarming rate. • Evaluation of two hundred and thirty-six water samples indicate more than 50 percent samples not fit for drinking.