In order to tackle the issue of excessive coal dust and hydrogen sulfide (H2S) concurrently in underground coal mines, an alkaline dust suppressant was formulated by combining surfactant sodium sec-alkyl sulfonate (SAS60) and sodium carbonate (Na2CO3) at a certain mass ratio, meant for injection into coal seams. This study principally targeted long-flame coal extracted from Hequ County, located in Shanxi Province, China. The objective was to investigate and analyze the underlying process of how alkaline dust suppressants affect the wettability of coal. A comprehensive strategy including contact angle determination, Fourier transform infrared absorption spectrometer(FTIR) analysis, low-temperature nitrogen adsorption tests, scanning electron microscope(SEM) experimental studies, and molecular dynamics simulations was employed for this examination. The results revealed that merging Na2CO3 with SAS60 could reduce the coal’s contact angle. Despite the core structure of the coal surface staying unchanged after alkaline dust suppressant treatment, a rise in the number of hydrophilic functional groups was observed. This count notably surpassed the amount of hydrophobic functional groups, consequently boosting the coal’s hydrophilicity. The permeability of the examined coal specimens was chiefly affected by the existence of macropores and mesopores. Processing with 0.05 wt% SAS60 and 1.0 wt% Na2CO3, the coal acquired additional pores and cracks, causing an upswing of average pore size by 25.79% and a 30.64% increase in the maximum gas adsorption. This facilitated more straightforward infiltration of water into the coal dust. Molecular dynamics simulation outcomes indicated a closer affiliation between coal and water following the incorporation of Na2CO3. It led to a heightened activity in water molecule movement, fortifying intermolecular electrostatic interactions, and fostering the creation of hydrogen bonds. Consequently, this improved the coal’s wettability. The increase in the mass fraction of Na2CO3 directly corresponds to a more considerable enhancement in the solution’s ability to wet the coal. The outcomes of the molecular dynamics simulation validated the experimental results’ precision.