Long-range Electron Transfer Research Articles

Modulated Intermolecular Interactions in Ferrocenylalkanethiolate Self-Assembled Monolayers on Gold

Redox-labeled self-assembled monolayers (SAMs) on gold are excellent model systems for the study of long-range electron transfer processes at electrolyte–electrode interfaces, particularly the distance and reorganization energy dependences. In this work, we have shown that the intermolecular interaction among redox centers is in fact a crucial factor in the overall, nonideal electrochemical response of ferrocenylalkanethiolate SAMs on gold. In both single-component and high-ratio binary monolayers of 11-ferrocenyl-1-undecanethiol (FcC11SH), the two distinct pairs of redox peaks are corresponding to rather moderate differences in the packing densities of the two structural domains. We have discovered that the redox peak at lower potential becomes narrower and higher when organic solvents (nitrobenzene or octanol) are added to the aqueous electrolyte, while the peak at the higher potentials is barely influenced. On the basis of the Frumkin isotherm, we have obtained the intermolecular interaction parameters in the different structural domains of the monolayers by fitting the experimental data. The results showed that the intermolecular interaction in the FcC11S–Au SAMs can change from repulsion to attraction upon adding organic solvent in the aqueous electrolyte. It is suggested that the solvent perturbation to the SAM structure at monolayer/electrolyte interface induces remarkable change in the intermolecular interactions and therefore modulates the observed electrochemical responses from nonideal to nearly ideal.

97 Study on electron transfer through RNA/DNA duplex using pyrene and 5-bromouracil as an electron donor and acceptor pair

Because of potential applications in nanoscale devices, DNA-mediated charge transfer (CT) has attracted much interest. Through spectroscopic and chemical studies, it has been shown that both positive and negative charges injected into DNA bases can move through DNA over significant distances. The factors affecting to DNA-mediated CT are the nature of the charge donor and acceptor, the structural dynamics of DNA, and the intervening base sequences or the integrity of the base stacks. The last factor led to the electrochemical devices to detect the perturbations of DNA stacks such as a mismatch base pair. The photo-induced charge migration in DNA possessing a donor–acceptor pair has resulted in the long-lived charge separated state. This charge separation offers important insights for the development of photo-energy conversion devices such as solar cells. In contrast to the DNA-mediated CT, little attention has been paid for CT in a RNA duplex. Since RNA duplexes have the base stacking overlaps and dynamics that are significantly different from those of DNA–DNA as well as of DNA–RNA duplexes, they are another choice of attractive medium for CT. We have conducted the research on CT in RNA duplexes consisting of a pendant donor (pyrene) and acceptor (5-bromouracil or nitrobenzene) pair. We have found that long-range excess electron transfer occurs through RNA π-stacks with double exponential distance dependence. This finding should contribute to uncover the mechanism of RNA-mediated electron transfer and open a way for development of RNA-based devices that control electron migrations. By contrast, the pyrene-donor and 5-bromouracil-acceptor system indicates that DNA may not act as an efficient medium for the excess electron transfer.

Modeling biofilms with dual extracellular electron transfer mechanisms

Electrochemically active biofilms have a unique form of respiration in which they utilize solid external materials as terminal electron acceptors for their metabolism. Currently, two primary mechanisms have been identified for long-range extracellular electron transfer (EET): a diffusion- and a conduction-based mechanism. Evidence in the literature suggests that some biofilms, particularly Shewanella oneidensis, produce the requisite components for both mechanisms. In this study, a generic model is presented that incorporates the diffusion- and the conduction-based mechanisms and allows electrochemically active biofilms to utilize both simultaneously. The model was applied to S. oneidensis and Geobacter sulfurreducens biofilms using experimentally generated data found in the literature. Our simulation results show that (1) biofilms having both mechanisms available, especially if they can interact, may have a metabolic advantage over biofilms that can use only a single mechanism; (2) the thickness of G. sulfurreducens biofilms is likely not limited by conductivity; (3) accurate intrabiofilm diffusion coefficient values are critical for current generation predictions; and (4) the local biofilm potential and redox potential are two distinct parameters and cannot be assumed to have identical values. Finally, we determined that simulated cyclic and squarewave voltammetry based on our model are currently not capable of determining the specific percentages of extracellular electron transfer mechanisms in a biofilm. The developed model will be a critical tool for designing experiments to explain EET mechanisms.

Constrained density functional theory applied to electron tunnelling between defects in MgO

We employ a periodic plane-wave implementation of constrained density functional theory to describe electron tunnelling between oxygen vacancy defects in MgO. We find that calculated electron transfer parameters, and therefore electron tunnelling rates, depend sensitively on the fraction of Hartree-Fock exchange (HFX) used to approximate the exchange-correlation functional. In particular, we show that the exponential decay constant for electronic coupling (β) is proportional to the square-root of the band gap of MgO. Therefore, it is essential to use an exchange-correlation functional which predicts the correct band gap for accurate prediction of electron tunnelling rates. We also present a scheme for the correction of finite size effects for electronic coupling due to the interaction with periodic images, and discuss the sensitivity of the results with respect to the charge constraint used. The computationally demanding calculations presented in this work have only become feasible owing to recent advances in both computer hardware and code parallelisation and demonstrate that the first principles modelling of long-range electron transfer in wide-gap oxides is now possible.

Metabolic spatial variability in electrode-respiring Geobacter sulfurreducens biofilms

In this study, we quantified electron transfer rates, depth profiles of electron donor, and biofilm structure of Geobacter sulfurreducens biofilms using an electrochemical-nuclear magnetic resonance microimaging biofilm reactor. Our goal was to determine whether electron donor limitations existed in electron transfer processes of electrode-respiring G. sulfurreducens biofilms. Cells near the top of the biofilms consumed acetate and were metabolically active; however, acetate concentration decreased to below detection within the top 100 microns of the biofilms. Additionally, porosity in the biofilms fell below 10% near the electrode surface, exacerbating exclusion of acetate from the lower regions. The dense biofilm matrix in the acetate-depleted zone acted as an electrical conduit passing electrons generated at the top of the biofilm to the electrode. To verify the distribution of cell metabolic activity, we used uranium as a redox-active probe for localizing electron transfer activity and X-ray absorption spectroscopy to determine the uranium oxidation state. Cells near the top reduced UVI more actively than the cells near the base. High-resolution transmission electron microscopy images showed intact, healthy cells near the top and plasmolyzed cells near the base. Contrary to models proposed in the literature, which hypothesize that cells nearest the electrode surface are the most metabolically active because of a lower electron transfer resistance, our results suggest that electrical resistance through the biofilm does not restrict long-range electron transfer. Cells far from the electrode can respire across metabolically inactive cells, taking advantage of their extracellular infrastructure produced during the initial biofilm formation.

Conjugated self-doped polyaniline–DNA hybrid as trigger for highly sensitive reagentless and electrochemical self-signal amplifying DNA hybridization sensing

In very recent years, polyaniline or its derivatives have been adopted to efficiently immobilize probe DNA via π-π interaction between conjugated interface and DNA bases. In this work, self-doped polyaniline (SPAN)-DNA hybrid was adopted as the platform to construct a DNA biosensor with label-free, reagentless and electrochemical self-signal amplifying features. This was achieved by the π-π interaction between conjugated SPAN and DNA bases, also the intrinsic differences between single-stranded DNA (ssDNA) and double-stranded DNA (dsDNA). The tightly cross-linked hybrid was tethered to Au electrode, which had been anchored by p-aminothiophenol (PATP) self-assembled monolayer (SAM) previously, based on the phosphoramidate bond between PATP and ssDNA. SPAN in the recognition surface exhibited well-defined redox signals under neutral conditions. Due to the intrinsic property differences between ssDNA and dsDNA, such as rigidity, π-stacked bases, charge distribution and long-range electron transfer, SPAN-DNA underwent a major conformational change after hybridization. The redox behaviors of SPAN were modulated by DNA, which served as signals to monitor hybridization. As an example, the gene fragment related to one of the screening genes for the genetically modified plants, cauliflower mosaic virus 35S gene was satisfactorily detected with this strategy. Under optimal conditions, the dynamic range for the DNA assay was from 1.0 × 10(-14) mol L(-1) to 1.0 × 10(-8) mol L(-1) with the detection limit of 2.3 × 10(-15) mol L(-1). This work presents the construction of a recognition surface for the highly-sensitive electrochemical DNA hybridization detection via the self-signal amplifying procedure of conjugated SPAN-DNA hybrid. Unlike most signal amplifying processes using outer indicators, complex labels or other reagents, this procedure possesses simplicity and convenience.

Mind the gap: diversity and reactivity relationships among multihaem cytochromes of the MtrA/DmsE family

Shewanella oneidensis MR-1 has the ability to use many external terminal electron acceptors during anaerobic respiration, such as DMSO. The pathway that facilitates this electron transfer includes the decahaem cytochrome DmsE, a paralogue of the MtrA family of decahaem cytochromes. Although both DmsE and MtrA are decahaem cytochromes implicated in the long-range electron transfer across a ~300 Å (1 Å=0.1 nm) wide periplasmic 'gap', MtrA has been shown to be only 105 Å in maximal length. In the present paper, DmsE is further characterized via protein film voltammetry, revealing that the electrochemistry of the DmsE haem cofactors display macroscopic potentials lower than those of MtrA by 100 mV. It is possible this tuning of the redox potential of DmsE is required to shuttle electrons to the outer-membrane proteins specific to DMSO reduction. Other decahaem cytochromes found in S. oneidensis, such as the outer-membrane proteins MtrC, MtrF and OmcA, have been shown to have electrochemical properties similar to those of MtrA, yet possess a different evolutionary relationship.

Polycation Induced Potential Dependent Structural Transitions of Oligonucleotide Monolayers on Au(111)-Surfaces

We have studied self-assembled molecular monolayers (SAMs) of several 3'-C3-SH conjugated single-strand (ss) and double-strand (ds) 20-base oligonucleotides (ONs) immobilized on single-crystal, atomically planar Au(111)-electrode surfaces in the presence of the triply positively charged base spermidine (Spd). This cation binds strongly to the polyanionic ON backbone and stabilizes the ds-form relative to the ss-form. A combination of chemical ON synthesis, melting temperature measurements, cyclic voltammetry (CV), and in situ scanning tunneling microscopy (STM) in aqueous biological buffer under electrochemical potential control was used. Spd binding was found to increase notably the ds-ON melting temperature. CV displays capacitive features associated with ss- and ds-ON. A robust capacitive peak around -0.35 V versus saturated calomel electrode (SCE), specific to ds-ON and highly sensitive to base pair mismatches, was consistently observed. The peak is likely to be caused by surface structural reorganization around the peak potential and located close to reported peak potentials of several DNA intercalating or covalently tethered redox molecules reported as probes for long-range electron transfer.

Ion imaging study of reaction dynamics in the N+ + CH4 system

The velocity map ion imaging method is applied to the ion-molecule reactions of N(+) with CH(4). The velocity space images are collected at collision energies of 0.5 and 1.8 eV, providing both product kinetic energy and angular distributions for the reaction products CH(4)(+), CH(3)(+), and HCNH(+). The charge transfer process is energy resonant and occurs by long-range electron transfer that results in minimal deflection of the products. The formation of the most abundant product, CH(3)(+), proceeds by dissociative charge transfer rather than hydride transfer, as reported in earlier publications. The formation of HCNH(+) by C-N bond formation appears to proceed by two different routes. The triplet state intermediates CH(3)NH(+) and CH(2)NH(2)(+) that are formed as N(+)((3)P) approaches CH(4) may undergo sequential loss of two hydrogen atoms to form ground state HCNH(+) products on a spin-allowed pathway. However, the kinetic energy distributions for formation of HCNH(+) extend past the thermochemical limit to form HCNH(+) + 2H, implying that HCNH(+) may also be formed in concert with molecular hydrogen, and requiring that intersystem crossing to the singlet manifold must occur in a significant (~25%) fraction of reactive collisions. We also report GAUSSIAN G2 calculations of the energies and structures of important singlet and triplet [CNH(4)(+)] complexes that serve as precursors to product formation.

Long-Range Electron Transfer in Zinc-Phthalocyanine-Oligo(Phenylene-ethynylene)-Based Donor-Bridge-Acceptor Dyads

In the context of long-range electron transfer for solar energy conversion, we present the synthesis, photophysical, and computational characterization of two new zinc(II) phthalocyanine oligophenylene-ethynylene based donor-bride-acceptor dyads: ZnPc-OPE-AuP(+) and ZnPc-OPE-C(60). A gold(III) porphyrin and a fullerene has been used as electron accepting moieties, and the results have been compared to a previously reported dyad with a tin(IV) dichloride porphyrin as the electron acceptor (Fortage et al. Chem. Commun. 2007, 4629). The results for ZnPc-OPE-AuP(+) indicate a remarkably strong electronic coupling over a distance of more than 3 nm. The electronic coupling is manifested in both the absorption spectrum and an ultrafast rate for photoinduced electron transfer (k(PET) = 1.0 × 10(12) s(-1)). The charge-shifted state in ZnPc-OPE-AuP(+) recombines with a relatively low rate (k(BET) = 1.0 × 10(9) s(-1)). In contrast, the rate for charge transfer in the other dyad, ZnPc-OPE-C(60), is relatively slow (k(PET) = 1.1 × 10(9) s(-1)), while the recombination is very fast (k(BET) ≈ 5 × 10(10) s(-1)). TD-DFT calculations support the hypothesis that the long-lived charge-shifted state of ZnPc-OPE-AuP(+) is due to relaxation of the reduced gold porphyrin from a porphyrin ring based reduction to a gold centered reduction. This is in contrast to the faster recombination in the tin(IV) porphyrin based system (k(BET) = 1.2 × 10(10) s(-1)), where the excess electron is instead delocalized over the porphyrin ring.

Alternative ground states enable pathway switching in biological electron transfer

Electron transfer is the simplest chemical reaction and constitutes the basis of a large variety of biological processes, such as photosynthesis and cellular respiration. Nature has evolved specific proteins and cofactors for these functions. The mechanisms optimizing biological electron transfer have been matter of intense debate, such as the role of the protein milieu between donor and acceptor sites. Here we propose a mechanism regulating long-range electron transfer in proteins. Specifically, we report a spectroscopic, electrochemical, and theoretical study on WT and single-mutant Cu(A) redox centers from Thermus thermophilus, which shows that thermal fluctuations may populate two alternative ground-state electronic wave functions optimized for electron entry and exit, respectively, through two different and nearly perpendicular pathways. These findings suggest a unique role for alternative or "invisible" electronic ground states in directional electron transfer. Moreover, it is shown that this energy gap and, therefore, the equilibrium between ground states can be fine-tuned by minor perturbations, suggesting alternative ways through which protein-protein interactions and membrane potential may optimize and regulate electron-proton energy transduction.

Highly selective DNA biosensor based on the long-range electron transfer of indigo carmine through DNA duplex

We have developed a highly selective DNA biosensor. It was based on the long-range electron transfer (LRET) from the electroactive dye indigo carmine (IC) through the DNA duplex on a glassy carbon electrode. Voltammetric experiments showed that IC interacts with dsDNA through a typical intercalative mode with a relatively strong affinity of 2.3(±0.6) × 106 M-1. If incubated with DNA in IC solution, no response was observed with the ssDNA-modified probe electrode. However, a pair of well-defined redox peak was observed with a DNA-hybridized electrode, proving the presence of LRET on the biosensor. The biosensor also can differentiate complementary sequences, non-complementary sequences, and even the mutated sequences with single-base mismatches at different sites.

Characterization of electron tunneling and hole hopping reactions between different forms of MauG and methylamine dehydrogenase within a natural protein complex.

Respiration, photosynthesis, and metabolism require the transfer of electrons through and between proteins over relatively long distances. It is critical that this electron transfer (ET) occur with specificity to avoid cellular damage, and at a rate that is sufficient to support the biological activity. A multistep hole hopping mechanism could, in principle, enhance the efficiency of long-range ET through proteins as it does in organic semiconductors. To explore this possibility, two different ET reactions that occur over the same distance within the protein complex of the diheme enzyme MauG and different forms of methylamine dehydrogenase (MADH) were subjected to kinetic and thermodynamic analysis. An ET mechanism of single-step direct electron tunneling from diferrous MauG to the quinone form of MADH is consistent with the data. In contrast, the biosynthetic ET from preMADH, which contains incompletely synthesized tryptophan tryptophylquinone, to the bis-Fe(IV) form of MauG is best described by a two-step hole hopping mechanism. Experimentally determined ET distances matched the distances determined from the crystal structure that would be expected for single-step tunneling and multistep hopping. Experimentally determined relative values of electronic coupling (H(AB)) for the two reactions correlated well with the relative H(AB) values predicted from computational analysis of the structure. The rate of the hopping-mediated ET reaction is also 10-fold greater than that of the single-step tunneling reaction despite a smaller overall driving force for the hopping-mediated ET reaction. These data provide insight into how the intervening protein matrix and redox potentials of the electron donor and acceptor determine whether the ET reaction proceeds via single-step tunneling or multistep hopping.

Long-range exciton dissociation in organic solar cells.

It is normally assumed that electrons and holes in organic solar cells are generated by the dissociation of excitons at the interface between donor and acceptor materials in strongly bound hole-electron pairs. We show in this contribution that excitons can dissociate tens of angstroms away from the interface and generate partially separated electrons and holes, which can more easily overcome their coulombic attraction and form free charges. We first establish under what conditions long-range exciton dissociation is likely (using a kinetic model and a microscopic model for the calculation of the long-range electron transfer rate). Then, defining a rather general model Hamiltonian for the donor material, we show that the phenomenon is extremely common in the majority of polymer:fullerene bulk heterojunction solar cells.

Electron tunneling in lithium-ammonia solutions probed by frequency-dependent electron spin relaxation studies.

Electron transfer or quantum tunneling dynamics for excess or solvated electrons in dilute lithium-ammonia solutions have been studied by pulse electron paramagnetic resonance (EPR) spectroscopy at both X- (9.7 GHz) and W-band (94 GHz) frequencies. The electron spin-lattice (T(1)) and spin-spin (T(2)) relaxation data indicate an extremely fast transfer or quantum tunneling rate of the solvated electron in these solutions which serves to modulate the hyperfine (Fermi-contact) interaction with nitrogen nuclei in the solvation shells of ammonia molecules surrounding the localized, solvated electron. The donor and acceptor states of the solvated electron in these solutions are the initial and final electron solvation sites found before, and after, the transfer or tunneling process. To interpret and model our electron spin relaxation data from the two observation EPR frequencies requires a consideration of a multiexponential correlation function. The electron transfer or tunneling process that we monitor through the correlation time of the nitrogen Fermi-contact interaction has a time scale of (1-10) × 10(-12) s over a temperature range 230-290 K in our most dilute solution of lithium in ammonia. Two types of electron-solvent interaction mechanisms are proposed to account for our experimental findings. The dominant electron spin relaxation mechanism results from an electron tunneling process characterized by a variable donor-acceptor distance or range (consistent with such a rapidly fluctuating liquid structure) in which the solvent shell that ultimately accepts the transferring electron is formed from random, thermal fluctuations of the liquid structure in, and around, a natural hole or Bjerrum-like defect vacancy in the liquid. Following transfer and capture of the tunneling electron, further solvent-cage relaxation with a time scale of ∼10(-13) s results in a minor contribution to the electron spin relaxation times. This investigation illustrates the great potential of multifrequency EPR measurements to interrogate the microscopic nature and dynamics of ultrafast electron transfer or quantum-tunneling processes in liquids. Our results also impact on the universal issue of the role of a host solvent (or host matrix, e.g. a semiconductor) in mediating long-range electron transfer processes and we discuss the implications of our results with a range of other materials and systems exhibiting the phenomenon of electron transfer.

Imaging ion-molecule reactions: Charge transfer and C-N bond formation in the C+ + NH3 system

The velocity mapping ion imaging method is applied to the ion-molecule reactions occurring between C(+) and NH(3). The velocity space images are collected over the relative collision energy range from 1.5 to 3.3 eV, allowing both product kinetic energy distributions and angular distributions to be obtained from the data. The charge transfer process appears to be direct, dominated by long-range electron transfer that results in minimal deflection of the products. The product kinetic energy distributions are consistent with a process dominated by energy resonance. The kinetic energy distributions for C-N bond formation appear to scale with the total available energy, providing strong evidence that energy in the [CNH(3)](+) precursor to products is distributed statistically. The angular distributions for C-N bond formation show pronounced forward-backward symmetry, as expected for a complex that resembles a prolate symmetric top decaying along its symmetry axis.

カチオンラジカルを経由するオレフィンの[2+2]環化付加反応 ーシグマ結合が介在した長距離電子移動による環形成の制御ー

カチオンラジカルを経由するオレフィンの[2+2]環化付加反応 ーシグマ結合が介在した長距離電子移動による環形成の制御ー

Synthesis, crystal structure, vibrational spectral and density functional studies of 4-(1,3-dioxoisoindolin-2-yl)antipyrine

The 4-(1,3-dioxoisoindolin-2-yl)antipyrine, C19H15N3O3, was synthesized by the condensation reaction of 4-aminoantipyrine and phthalic anhydride in ethanol solution using triethylamine as catalyst, and characterized by X-ray diffraction and spectral techniques. The experimental spectral bands were structurally assigned with the theoretical calculation, and the thermodynamic properties of the studied compound were obtained from the theoretically calculated frequencies. The linear polarizability (α0) and first hyperpolarizabilities (β0) calculated at B3LYP/6-31G(d) level are of 33.6921Å3 and 2.7835×10−30cm5/esu, respectively. The NBO analysis reveals that the studied molecule presents a structural characteristic of long-range electron-transfer with the energy gap of ⩾3.639eV. The frontier molecular orbitals are responsible for the electron polarization and long-range electron-transfer properties. The results indicate that the compound might be an excellent candidate of photo-responsive materials.

Hydrogen-Bond Strengthening upon Photoinduced Electron Transfer in Ruthenium–Anthraquinone Dyads Interacting with Hexafluoroisopropanol or Water

Quinones play a key role as primary electron acceptors in natural photosynthesis, and their reduction is known to be facilitated by hydrogen-bond donors or protonation. In this study, the influence of hydrogen-bond donating solvents on the thermodynamics and kinetics of intramolecular electron transfer between Ru(bpy)(3)(2+) (bpy = 2,2'-bipyridine) and 9,10-anthraquinone redox partners linked together via one up to three p-xylene units was investigated. Addition of relatively small amounts of hexafluoroisopropanol to dichloromethane solutions of these rigid rodlike donor-bridge-acceptor molecules is found to accelerate intramolecular Ru(bpy)(3)(2+)-to-anthraquinone electron transfer substantially because anthraquinone reduction occurs more easily in the presence of the strong hydrogen-bond donor. Similarly, the rates for intramolecular electron transfer are significantly higher in acetonitrile/water mixtures than in dry acetonitrile. In dichloromethane, an increase in the association constant between hexafluoroisopropanol and anthraquinone by more than 1 order of magnitude following quinone reduction points to a significant strengthening of the hydrogen bonds between the hydroxyl group of hexafluoroisopropanol and the anthraquinone carbonyl functions. The photoinduced intramolecular long-range electron transfer process thus appears to be followed by proton motion; hence the overall photoinduced reaction may be considered a variant of stepwise proton-coupled electron transfer (PCET) in which substantial proton density (rather than a full proton) is transferred after the electron transfer has occurred.

Two Isoforms of Geobacter sulfurreducens PilA Have Distinct Roles in Pilus Biogenesis, Cytochrome Localization, Extracellular Electron Transfer, and Biofilm Formation

Type IV pili of Geobacter sulfurreducens are composed of PilA monomers and are essential for long-range extracellular electron transfer to insoluble Fe(III) oxides and graphite anodes. A previous analysis of pilA expression indicated that transcription was initiated at two positions, with two predicted ribosome-binding sites and translation start codons, potentially producing two PilA preprotein isoforms. The present study supports the existence of two functional translation start codons for pilA and identifies two isoforms (short and long) of the PilA preprotein. The short PilA isoform is found predominantly in an intracellular fraction. It seems to stabilize the long isoform and to influence the secretion of several outer-surface c-type cytochromes. The long PilA isoform is required for secretion of PilA to the outer cell surface, a process that requires coexpression of pilA with nine downstream genes. The long isoform was determined to be essential for biofilm formation on certain surfaces, for optimum current production in microbial fuel cells, and for growth on insoluble Fe(III) oxides.