Biological membranes exhibit a large degree of lateral heterogeneity. Membrane rafts, that is, small and highly dynamic yet distinct regions in the membrane, are supposed to play important roles for cellular processes such as signaling, trafficking, and membrane protein structure, function, and clustering. The study of the atomistic structural dynamics that governs these processes however, was hitherto impeded by the limited resolution of experimental techniques.We studied the sorting and clustering of synthetic WALP transmembrane peptides in heterogeneous model membranes with two coexisting fluid domains that resemble membrane rafts. To this end, we combined large-scale molecular dynamics simulations (using both coarse-grained and all-atom models) with confocal fluorescence microscopy experiments. In particular, we focused on how the interplay between peptide- and membrane-mediated forces determines the processes, and studied the role of hydrophobic mismatch between the peptide and the membrane. On the multi-microsecond timescale accessed by our simulations, the peptides prefer the liquid-disordered over the liquid-ordered membrane domain, irrespective of the mismatch. Free energy calculations provide a deeper understanding of the underlying physical processes and reveal how a delicate balance between entropic and enthaplic contributions determines the sorting of peptides in the membrane domains. Our study is a first step towards understanding the driving forces for protein sorting in heterogeneous membranes, which might ultimately enable a rational design of raft proteins.
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