Simple SummaryMalaxis monophyllos is an ephemeral orchid with very small, greenish flowers, whose pollination system remains vague. Therefore, the authors aimed to identify the flower’s features, including its anatomical micro and ultrastructure as well as scent biochemistry, which are involved in attracting pollinators. In this paper, the authors established the variety of emissions of M. monophyllos volatile compounds, with a high proportion of aldehydes and aliphatic alcohols, listed as chemicals that induce a pronounced reaction in Diptera. Second, the entire M. monophyllos labellum exhibits metabolic and secretory activity, which can be related to both emission of volatiles and visual attractants but also to the nutritional reward for pollinators. All these flower features indicated that its pollination system is dedicated to dipterans, with few signaling modalities corresponding to deceptive species (brood site and food decoy) but also referring to rewarding ones (nutritional secretion, fungus/microbe reward). This research reveals a few new issues in M. monophyllos pollination biology that provides new scientific areas for in-depth insights in the future.Many orchid species have evolved complex floral signals to ensure pollination efficiency. Here, the authors combined analyses of anatomical flower structure with analyses of the volatile composition and flower-visiting insects’ behaviour, as well as characterised features that can attract pollinators of the inconspicuous orchid Malaxis monophyllos. During field observations, the authors found that only small Diptera (e.g., mosquitos, drosophilids, fungus gnats) visit and are interested in the flowers of M. monophyllos, which was reflected in the characterised flower features that combine well with the pollination system, which engages dipterans. Analyses of the M. monophyllos floral scent revealed substantial concentrations of aliphatic compounds, e.g., 1-octen-3-ol and 1-octanol, which condition the mushroom-like scent and a substantial fraction of alkanes, some of which have been previously described as sex mimicry and aggregation pheromones in orchids’ deceptive systems. The labellum anatomical structure exhibits a highly diverse cell cuticle surface and pronounced metabolic and secretory activity of the epidermal and subepidermal cells from all parts of the labellum. Moreover, our study provides evidence for the subsequent decoys of M. monophyllos flowers, including visual signals, such as raphides located on the labellum margin and the rewarding ones connected with lipid secretion limited to the area behind the column. Taking an integrative approach to studying M. monophyllos pollination biology, the authors provide new insight into its previously vague pollination strategies and provide evidence for complex floral signal operation in luring potential pollinators. The synergistic effect of M. monophyllos flowers’ volatile and visual signals, together with additional rewarding for nectar/fungus/microbe-feeding pollinators, requires further detailed investigation that will be invaluable in explaining the evolution of Diptera-specific pollination systems in orchids.