Animal Life History Research Articles

Evaluating risks associated with capture and handling of mule deer for individual‐based, long‐term research

AbstractCapture and handling techniques for individual‐based, long‐term research that tracks the life history of animals by recapturing the same individuals for several years has vastly improved study inferences and our understanding of animal ecology. Yet there are corresponding risks to study animals associated with physical trauma or capture myopathy that can occur during or following capture events. Rarely has empirical evidence existed to guide decisions associated with understanding the magnitude of capture‐related risks, how to reduce these risks when possible, and implications for mortality censoring and survival estimates. We used data collected from 2,399 capture events of mule deer (Odocoileus hemionus) via helicopter net‐gunning to compare daily survival probabilities within a 10‐week period centered on a capture event and evaluated how animal age, nutritional condition (body fat), and various handling methods influenced survival before, during, and following a capture event. Direct mortality resulting from capture efforts was 1.59%. Mean daily survival was 0.9993 ± 0.0001 (SE) during the 5‐week pre‐capture window, was depressed the day of capture at 0.9841 ± 0.0004, and rebounded to 0.9990 ± 0.0008 during the 5‐week post‐capture window. Neither capture nor handling had a detectable effect on post‐capture survival, including handling time ( = 13.30 ± 1.87 min), capture time of year (i.e., Dec or Mar), tooth extraction, and the number of times an animal had been recaptured (2–17 times). Although mortality rate was slightly elevated during capture (resulting from physical trauma associated with capture), age and nutritional condition did not influence the probability of mortality during a capture event. Following a capture event, nutritional condition influenced survival; however, that relationship was consistent with expected effects of nutritional condition on winter survival and independent of capture and handling. Overall survival rates 5 weeks before capture and 5 weeks after capture were not different. A specified window of time with depressed survival following capture and handling was not evident, which contradicts the implementation of a predetermined window often used by researchers and managers for censoring mortalities that occur after capture. Previous notions that censorship of all mortality data in the 2 weeks following capture is unwarranted and risks removal of meaningful data. With previous evidence guiding our protocols for capture (e.g., reduced chase time) and handling (e.g., temperature mitigation), low direct mortality and almost undetectable indirect mortality post capture reinforces the efficacy of helicopter net‐gunning for capture and recapture of mule deer in long‐term, individual‐based studies.

Reduction in animal abundance and oxygen availability during and after the end-Triassic mass extinction.

The end-Triassic biodiversity crisis was one of the most severe mass extinctions in the history of animal life. However, the extent to which the loss of taxonomic diversity was coupled with a reduction in organismal abundance remains to be quantified. Further, the temporal relationship between organismal abundance and local marine redox conditions is lacking in carbonate sections. To address these questions, we measured skeletal grain abundance in shallow-marine limestones by point counting 293 thin sections from four stratigraphic sections across the Triassic/Jurassic boundary in the Lombardy Basin and Apennine Platform of western Tethys. Skeletal abundance decreased abruptly across the Triassic/Jurassic boundary in all stratigraphic sections. The abundance of skeletal organisms remained low throughout the lower-middle Hettangian strata and began to rebound during the late Hettangian and early Sinemurian. A two-way ANOVA indicates that sample age (p < .01, η2 =0.30) explains more of the variation in skeletal abundance than the depositional environment or paleobathymetry (p < .01, η2 =0.15). Measured I/Ca ratios, a proxy for local shallow-marine redox conditions, show this same pattern with the lowest I/Ca ratios occurring in the early Hettangian. The close correspondence between oceanic water column oxygen levels and skeletal abundance indicates a connection between redox conditions and benthic organismal abundance across the Triassic/Jurassic boundary. These findings indicate that the end-Triassic mass extinction reduced not only the biodiversity but also the carrying capacity for skeletal organisms in early Hettangian ecosystems, adding to evidence that mass extinction of species generally leads to mass rarity among survivors.

Rostrum abnormalities in the endangered Indian Ocean humpback dolphin (Sousa plumbea) in South Africa.

Morphological abnormalities in wild animals can be indicators of the underlying health of a population and may be determined through routine photographic surveys. Here, we assess unusual rostrum conditions in Indian Ocean humpback dolphins (Sousa plumbea) inhabiting South African coastal waters to understand the rate of prevalence of abnormal rostrums and formulate hypotheses on potential causes. Photographic data were collated from systematic boat surveys and opportunistic sightings, obtained between April 1998 and March 2021 in various regions along the South African coast. Overall, 31 unique individuals were found with abnormal rostrum conditions, varying from slight misalignments to severe wounds and/or aberrant morphologies. In most cases, injuries were likely caused by natural events during the animal's life history such as interactions with sharks and/or reef-associated hunting strategies. Mark-recapture data indicated that individuals had survived with these injuries for up to 10 years. This study reports the highest incidence of rostrum abnormalities in the species. As numbers reflect only those that have survived their injuries, they are considered a minimum estimate. A better understanding of the cause(s) of these injuries is important given the endangered status of this species.

A global meta-analysis reveals higher variation in breeding phenology in urban birds than in their non-urban neighbours.

Cities pose a major ecological challenge for wildlife worldwide. Phenotypic variation, which can result from underlying genetic variation or plasticity, is an important metric to understand eco-evolutionary responses to environmental change. Recent work suggests that urban populations might have higher levels of phenotypic variation than non-urban counterparts. This prediction, however, has never been tested across species nor over a broad geographical range. Here, we conducted a meta-analysis of the avian literature to compare urban versus non-urban means and variation in phenology (i.e. lay date) and reproductive effort (i.e. clutch size, number of fledglings). First, we show that urban populations reproduce earlier and have smaller broods than non-urban conspecifics. Second, we show that urban populations have higher phenotypic variation in laying date than non-urban populations. This result arises from differences between populations within breeding seasons, conceivably due to higher landscape heterogeneity in urban habitats. These findings reveal a novel effect of urbanisation on animal life histories with potential implications for species adaptation to urban environments (which will require further investigation). The higher variation in phenology in birds subjected to urban disturbance could result from plastic responses to a heterogeneous environment, or from higher genetic variation in phenology, possibly linked to higher evolutionary potential.

Reservoir population ecology, viral evolution and the risk of emerging infectious disease.

The ecology and life history of wild animals influences their potential to harbour infectious disease. This observation has motivated studies identifying empirical relationships between traits of wild animals and historical patterns of spillover and emergence into humans. Although these studies have identified compelling broad-scale patterns, they are generally agnostic with respect to underlying mechanisms. Here, we develop mathematical models that couple reservoir population ecology with viral epidemiology and evolution to clarify existing verbal arguments and pinpoint the conditions that favour spillover and emergence. Our results support the idea that average lifespan influences the likelihood of an animal serving as a reservoir for human infectious disease. At the same time, however, our results show that the magnitude of this effect is sensitive to the rate of viral mutation. Our results also demonstrate that viral pathogens causing persistent infections or a transient immune response within the reservoir are more likely to fuel emergence. Genetically explicit stochastic simulations enrich these mathematical results by identifying relationships between the genetic basis of transmission and the risk of spillover and emergence. Together, our results clarify the scope of applicability for existing hypotheses and refine our understanding of emergence risk.

A multidisciplinary approach to reconstructing the history of early animal life on Earth

A multidisciplinary approach to reconstructing the history of early animal life on Earth

Gradual warming prior to the end‐Permian mass extinction

AbstractThe biggest known mass extinction in the history of animal life occurred at the Permian–Triassic boundary and has often been linked to global warming. Previous studies have suggested that a geologically rapid (&lt;40 kyr) temperature increase of more than 10°C occurred simultaneously with the main extinction pulse. This hypothesis is challenged by geochemical and palaeontological data indicating profound environmental perturbations and a temperature rise prior to the main extinction. Using secondary ion mass spectrometry (SIMS), we measured oxygen isotope ratios from Changhsingian (late Permian) ostracods of north‐western Iran. Our data show that ambient seawater temperature began to rise at least 300 kyr prior to the main extinction event. Gradual warming by approximately 12°C was probably responsible for initial environmental degradation that eventually culminated in the global end‐Permian mass extinction.

Let's flock in Cyberspace - human flocking in virtual environments

The evolution of group living transformed the history of animal life on earth, yielding substantial selective benefits. Yet, without overcoming fundamental challenges such as how to coordinate movements with conspecifics, animals cannot maintain cohesion, and coordination is thus a prerequisite for the evolution of sociality in nonstationary animals. Although it has been considered that animal groups must coordinate the timing and direction of movements, coordinating speed is also essential to prevent the group from splitting. We investigated speed consensus in homing pigeon, Columba livia, flocks using high-resolution GPS. Despite observable differences in average solo speed (which was positively correlated with bird mass) compromises of up to 6% from the preferred solo speed were made to reach consensus in flocks. These results match theory which suggests that groups fly at an intermediate of solo speeds, which suggests speed averaging. By virtue of minimizing extreme compromises, speed averaging can maximize selective benefits across the group, suggesting shared consensus for group speed could be ubiquitous across taxa. Nevertheless, despite group-wide advantages, contemporary flight models have suggested unequal energetic costs in favour of individuals with intermediate body mass/preferred speed (hence the 'Goldilocks principle').

Understanding how diel and seasonal rhythms affect the movements of a small non‐migratory bird

AbstractDiel and seasonal rhythms affect an animal's environment and life history. Understanding how these rhythms influence movement increases our knowledge on how animals adjust to changing resources, environmental conditions, and risk to their survival. To better understand how diel and seasonal rhythms affect animals, we evaluated movements of Northern Bobwhite (Colinus virginianus, hereafter bobwhite). Because bobwhite are a small non‐migratory species that must cope with daily and seasonal changes in their environment year‐around, they are a model species to study how diel and seasonal rhythms influence animal movement of a non‐migratory species. GPS data from transmitters attached to bobwhite at four wildlife management sites across Oklahoma were collected during 2019–2021. We parsed the diel data as daytime (7:00 AM–7:00 PM Central Daylight Savings Time [CDT]) and nighttime (7:00 PM–7:00 AM CDT), and diurnal (sunrise–sunset) and nocturnal (sunset–sunrise), as well as by astronomical season. We calculated three movement metrics: net displacement (Euclidean distance from the starting fix to the ending fix of a path, which encompasses consecutive relocations in a time series of geographic fixes); cumulative distance (sum of all Euclidean distances between each consecutive fix along the path); and hourly movement. We modeled the data using a generalized linear mixed modeling approach. Across season, model predictions showed that net displacement was highest during spring, and daytime cumulative distance slowly increased as the year progressed. Bobwhite had two movement peaks during the diurnal period, one during 9:00 AM–10:00 AM and the other during 5:00 PM–8:00 PM depending on the season. Despite being diurnal, bobwhite occasionally made nocturnal movements, likely in response to a disturbance by a predator, inclement weather, or energetic demands. Movement peaks during the diurnal period may reflect changes in behavior in response to energy requirements, predator risk, and changes in air temperature. Life history events likely cause seasonal differences in movement. This study furthers our understanding of how animals move daily and seasonally, suggesting the importance of analyzing movement across the entire year because animals move differently across the day and year.

Reproduction in deep-sea vent shrimps is influenced by diet, with rhythms apparently unlinked to surface production.

Variations in offspring production according to feeding strategies or food supply have been recognized in many animals from various ecosystems. Despite an unusual trophic structure based on non‐photosynthetic primary production, these relationships remain largely under‐studied in chemosynthetic ecosystems. Here, we use Rimicaris shrimps as a study case to explore relationships between reproduction, diets, and food supply in these environments. For that, we compared reproductive outputs of three congeneric shrimps differing by their diets. They inhabit vents located under oligotrophic waters of tropical gyres with opposed latitudes, allowing us to also examine the prevalence of phylogenetic vs environmental drivers in their reproductive rhythms. For this, we used both our original data and a compilation of published observations on the presence of ovigerous females covering various seasons over the past 35 years. We report distinct egg production trends between Rimicaris species relying solely on chemosymbiosis—R. exoculata and R. kairei—and one relying on mixotrophy, R. chacei. Besides, our data suggest a reproductive periodicity that does not correspond to seasonal variations in surface production, with substantial proportions of brooding females during the same months of the year, despite those months corresponding to either boreal winter or austral summer depending on the hemisphere. These observations contrast with the long‐standing paradigm in deep‐sea species for which periodic reproductive patterns have always been attributed to seasonal variations of photosynthetic production sinking from the surface. Our results suggest the presence of an intrinsic basis for biological rhythms in the deep sea, and bring to light the importance of having year‐round observations in order to understand the life history of vent animals.

Subterranean Life-Style Does Not Limit Long Distance Dispersal in African Mole-Rats

Dispersal from the natal site to breeding sites is a crucial phase in the life history of animals and can have profound effects on the reproductive ecology and the structure of animal societies. However, few studies have assessed dispersal dynamics in subterranean mammals and it is unknown whether dispersal distances are constrained by living underground. Here we show, in social, subterranean Damaraland mole-rats (Fukomys damarensis), that a subterranean lifestyle does not preclude long distance dispersal and that both sexes are capable of successfully dispersing long distances (&amp;gt;4 km). Body condition did not predict dispersal distance, but dispersers from larger groups traveled farther than individuals from smaller groups. Subsequently we show in a phylogenetically controlled comparative analysis of dispersal distances in subterranean and surface-dwelling rodents that living underground does not constrain dispersal distances and that dispersal capacity is mainly a consequence of body size in both lifestyles.

Captive Asian short-clawed otters (Aonyx cinereus) learn to exploit unfamiliar natural prey.

Foraging plays a vital role in animal life histories, and learning whether unfamiliar food items are palatable is a key part of this process. Animals that engage in extractive foraging must also learn how to overcome the protective measures of their prey. While otters (subfamily Lutrinae) are a taxon known for their extractive foraging behaviour, how they learn about prey palatability and acquire extractive foraging techniques remains poorly understood. Here we investigated (i) how captive Asian short-clawed otters (Aonyx cinereus) learned to interact with, and extract meat from, unfamiliar natural prey and (ii) how their exploitation of such prey compared to their ability to overcome artificial foraging tasks containing familiar food rewards. Network-based diffusion analysis showed that otters learned to interact with unfamiliar natural prey by observing their group mates. However, once interacting with the prey, they learned to extract the meat mainly asocially. In addition, otters took longer to overcome the protective measures of unfamiliar natural prey than those of extractive food puzzles. Asian short-clawed otter populations are declining in the wild. Increasing our understanding of how they learn to overcome novel foraging challenges could help develop pre-release training procedures as part of reintroduction programmes for otter conservation.

Do female bonobos (Pan paniscus) disperse at the onset of puberty? Hormonal and behavioral changes related to their dispersal timing

Natal dispersal is a milestone in an animal's life history, but its timing in developmental trajectories may differ between species. Although the two Pan species exhibit a similar pattern of female-biased dispersal, female bonobos (P. paniscus) leave their natal groups at an earlier age than female chimpanzees (P. troglodytes). As a preliminary step to explore the dispersal strategies of female bonobos, this study aimed to determine the relations of sexual swelling development, behavioral and hormonal activation, and first ovulation relative to dispersal timing. We measured levels of urinary estrone conjugates (E1C) and pregnanediol glucuronide (PdG) from 14 nulliparous females in wild bonobo groups at Wamba in the Democratic Republic of the Congo, and recorded their copulations with mature males. When close to dispersal, female bonobos exhibited swelling of the sexual skin (labia minora and perianal region) that did not reach the mature stage. Urinary E1C levels and copulation rates increased slightly before dispersal and greatly increased after dispersal. Ovulatory or gestatory signs implied by daily hormone profiles were not detected until one to two years after dispersal. Our findings indicate that female bonobos disperse at an early pubertal stage before ovulatory cycling is established. This earlier dispersal than sexual maturation could allow female bonobos to postpone reproduction-related energy costs until they become familiar with their new group or gain more time finding the group more suitable for successful reproduction in the future before actually settling. Further demographic and genetic data from dispersal to reproduction will help clarify their dispersal strategies.

Drivers of torpor during the active season of Hazel Dormouse

Torpor is a life history strategy within more than half of mammalian orders, to achieve the conservation of energy particularly when species are experiencing unfavourable conditions. Daily torpor is limited to a duration of less than 24 hours and occurs when an animal reduces its metabolic rate and lowers its body temperature between bouts of activity. Hazel Dormice utilise daily torpor as an energy saving strategy during their active period (April-October) and the prevalence of torpor varies from year to year. The intrinsic and extrinsic drivers of daily torpor in Hazel Dormice are not yet well understood. I have identified drivers of torpor among Hazel Dormice which include climatic variables and the life history of individual animals. Dormice were more likely to be found in torpor on colder and wetter days and during colder and wetter seasons. Weight was a strong predictor of torpor; lighter individuals were more likely to be torpid earlier in the year (April-August) and heavier individuals later in the year (September-October). Individuals found in breeding nest boxes rarely enter torpor and solitary animals are more likely to be torpid. Sex only affects the prevalence of torpor in two months, August and September; males were more likely to be torpid in August and females in September. Using the resulting model I can predict how daily torpor occurrence might change under a changing climate. This will have consequences for Hazel Dormice in the UK as it is likely to affect survival and breeding rates.

Osteohistological description of ostrich and emu long bones, with comments on markers of growth.

Ostriches and emus are among the largest extant birds and are frequently used as modern analogs for the growth dynamics of non-avian theropod dinosaurs. These ratites quickly reach adult size in under 1 year, and as such do not typically exhibit annually deposited growth marks. Growth marks, commonly classified as annuli or lines of arrested growth (LAGs), represent reduced or halted osteogenesis, respectively, and their presence demonstrates varying degrees of developmental plasticity. Growth marks have not yet been reported from ostriches and emus, prompting authors to suggest that they have lost the plasticity required to deposit them. Here we observe the hind limb bone histology of three captive juvenile emus and one captive adult ostrich. Two of the three juvenile emus exhibit typical bone histology but the third emu, a 4.5-month-old juvenile, exhibits a regional arc of avascular tissue, which we interpret as a growth mark. As this mark is not present in the other two emus from the same cohort and it co-occurs with a contralateral broken fibula, we suggest variable biomechanical load as a potential cause. The ostrich exhibits a complete ring of avascular, hypermineralized bone with sparse, flattened osteocyte lacunae. We identify this as an annulus and interpret it as slowing of growth. In the absence of other growth marks and lacking the animal's life history, the timing and cause of this ostrich's reduced growth are unclear. Even so, these findings demonstrate that both taxa retain the ancestral developmental plasticity required to temporarily slow growth. We also discuss the potential challenges of identifying growth marks using incomplete population data sets and partial cortical sampling.

Does IGF-1 Shape Life-History Trade-Offs? Opposite Associations of IGF-1 With Telomere Length and Body Size in a Free-Living Bird

Hormonal pathways have been proposed to be key at modulating how fast individuals grow and reproduce and how long they live (i.e., life history trajectory). Research in model species living under controlled environment is suggesting that insulin-like growth factor 1 (IGF-1), which is an evolutionarily conserved polypeptide hormone, has an important role in modulating animal life histories. Much remains, however, to be done to test the role played by IGF-1 in shaping the phenotype and life history of animals in the wild. Using a wild long-lived bird, the Alpine swift (Tachymarptis melba), we show that adults with higher levels of IGF-1 had longer wings and shorter telomeres. Hence, telomeres being a proxy of lifespan in this species, our results support a potential role of IGF-1 at shaping the life-history of wild birds and suggest that IGF-1 may influence the growth-lifespan trade-off.

Chronic immune challenge is detrimental to female survival, feeding behavior, and reproduction in the field cricket Gryllus assimilis (Fabricius, 1775).

Physiological trade-offs among expensive fitness-related traits, such as reproduction and immunity, are common in life histories of animals. An immune challenge can have different effects on female reproduction mediated by resource allocation and acquisition. In this study, employing a widely used method to challenge the insect immune system (nylon implant), we assessed the effects of mounting a chronic immune response simulating three successive immune assaults on survival and reproduction of mated females of Gryllus assimilis. We also verified feeding behavior following an implantation, which can be important in explaining trade-off dynamics in terms of energy acquisition. For this, three experimental groups were designed (Control, Sham, and Implant) with oviposition rates, egg morphometry, and nymph vigour observed over 3weeks, at which ovarian mass and unlaid eggs were quantified from remaining individuals. The results showed that chronic implants were detrimental to female survival and reproduction throughout the experiments; Surgical Sham had no effect on survival compared to the control, but did on reproductive aspects such as oviposition rates and hatchling vigour. Thesenegative effects on reproduction in Sham disappeared in the last experimental week, but still strong in the implanted females. Such immune challenge affected the feeding behavior of implanted females by reducing food consumption compared to control after infection, which is probably explained by illness-induced anorexia that takes place to maximize the immune system performance as a part of sickness behavior, exacerbating the adverse effects observed on reproduction (i.e., fewer and smaller eggs, and low vigour of nymphs) and survival.

Measuring Daphnia life history in the wild: The efficacy of individual field cages.

Life‐history studies are often conducted in a laboratory environment where it is easy to assay individual animals. However, factors such as temperature, photoperiod, and nutrition vary greatly between laboratory and field environments, making it difficult to compare results. Consequently, there is a need to study individual life histories in the field, but this is currently difficult in systems such as Daphnia where it is not possible to mark and track individual animals. Here, we present a proof of principle study showing that field cages are a reliable method for collecting individual‐level life‐history data in Daphnia magna. As a first step, we compared the life history of paired animals reared outside and inside cages to test the hypothesis that cages allow free flow of algal food resources. We then used a seminatural mesocosm setting to compare the performance of individual field cages versus glass jars refilled with mesocosm water each day. We found that cages did not inhibit food flow and that differences in life histories between three clones detected in the jar assays were also detectable using the much less labor‐intensive field cages. We conclude that field cages are a feasible approach for collecting individual‐level life‐history data in systems such as Daphnia where individual animals cannot be marked and tracked.

Compensating for a stressful pregnancy? Glucocorticoid treatment during gravidity reduces metabolic rate in female fence lizards post-parturition

Reproduction is a critical part of an animal's life history, but one which incurs significant costs to survival and future reproductive potential. These physiological consequences are likely to be influenced by context – for example, if an individual is subject to environmental stressors, physiological and behavioral changes associated with reproduction may be altered. Glucocorticoids, hormones produced as part of the physiological response to stressors, may alter how reproduction affects female physiology and behavior, and therefore the outcomes of reproductive trade-offs. Glucocorticoids prioritize immediate survival over reproduction, for example through changes in immune function, metabolic rate, and foraging, which may reduce energy expenditure or increase energy gain. However, we previously found that female eastern fence lizards (Sceloporus undulatus) experiencing elevated glucocorticoid levels during gestation were nevertheless able to maintain reproductive output and body condition. Here we investigate compensatory mechanisms by which eastern fence lizard females may maintain reproduction under experimental increases in a glucocorticoid, corticosterone (CORT). We found that, although CORT-treated females had similar immune function and behavior, they had reduced metabolic rates 3-5 days post-parturition compared to control females. Given that CORT-treated females spent a similar time basking and had equal food intake compared to control females, we suggest that the reduced metabolic rate is a mechanism by which CORT-treated females maintain their energy balance and reduce the energetic costs of gestation during periods of stress. This study suggests that physiological responses to reproduction may be context-dependent and could act to minimize costs of reproduction in situations where CORT is elevated (such as during periods of environmental stress).

Microbiota Influences Fitness and Timing of Reproduction in the Fruit Fly Drosophila melanogaster.

ABSTRACTAssociated microorganisms (“microbiota”) play a central role in determining many animals’ survival and reproduction characteristics. The impact of these microbial influences on an animal’s fitness, or population growth, in a given environment has not been defined as clearly. We focused on microbiota-dependent host fitness by measuring life span and fecundity in Drosophila melanogaster fruit flies reared individually with 14 different bacterial species. Consistent with previous observations, the different bacteria significantly influenced the timing of fly life span and fecundity. Using Leslie matrices, we show that fly fitness was lowest when the microbes caused the flies to invest in life span over fecundity. Computational permutations showed that the positive fitness effect of investing in reproduction was reversed if fly survival over time was low, indicating that the observed fitness influences of the microbes could be context dependent. Finally, we showed that fly fitness is not influenced by bacterial genes that shape fly life span or fly triglyceride content, a trait that is related to fly survival and reproduction. Also, metagenome-wide association did not identify any microbial genes that were associated with variation in fly fitness. Therefore, the bacterial genetic basis for influencing fly fitness remains unknown. We conclude that bacteria influence a fly’s reproductive timing more than total reproductive output and that (e.g., environmental) conditions that influence fly survival likely determine which bacteria benefit fly fitness.IMPORTANCE The ability of associated microorganisms (“microbiota”) to influence animal life history traits has been recognized and investigated, especially in the past 2 decades. For many microbial communities, there is not always a clear definition of whether the microbiota or its members are beneficial, pathogenic, or relatively neutral to their hosts’ fitness. In this study, we report the influence of individual members of the microbiota on Drosophila melanogaster fitness using Leslie matrices that combine the microbial influences on fly survival and reproduction into a single fitness measure. Our results are consistent with a previous report that, in the laboratory, acetic acid bacteria are more beneficial to the flies than many strains of lactic acid bacteria. We add to the previous finding by showing that this benefit depends on fly survival rate. Together, our work helps to show how the microbiota of a fly influences its laboratory fitness and how these effects may translate to a wild setting.