Laser Synchrotron Research Articles

Monte Carlo study of X-ray grazing incidence microscopy using Geant4.

X-ray grazing incidence microscopy has extensive applications in the fields of laser inertial confinement fusion and synchrotron radiation. Monte Carlo methods can be used to determine the optical performance of X-ray grazing incidence microscopes and predict the experimental results, which is of great significance for studying physical experiments and diagnostics. In this paper, we proposed a Monte Carlo method based on Geant4 for studying X-ray grazing incidence microscopy. We introduced the G4MultilayerReflection class to describe the physical processes of X-ray multilayer mirrors. We designed a dual-energy Kirkpatrick-Baez microscope that can operate at 6.4 and 9.67 keV simultaneously. Monte Carlo simulations of the spatial resolution and throughput efficiency of the microscope were performed using Geant4, which was assembled and characterized. The spatial resolution results obtained by the Geant4 laboratory simulations, the theoretical model, and the experiments were in good agreement. Additionally, we conducted throughput efficiency calibration experiments for the 6.4 keV imaging channel. The difference between the experimental and Geant4-simulated throughput efficiency was evaluated and resulted in root mean square error values of 8.7% and 9.5% along the Y- and Z-axes, respectively.

Tensile strength of polyester fiber estimated by molecular-chain extension prior to structure formation

The combination of laser irradiation heating and synchrotron X-ray sources has made it possible to observe the fiber-structure development that occurs at sub-millisecond timescales after necking during continuous drawing. Through wide-angle X-ray diffraction (WAXD) and small-angle X-ray scattering (SAXS) analysis of poly(ethylene terephthalate) fibers of three different molecular weights drawn under equivalent stresses, a good correlation was observed between the d-spacing of smectic (001ʹ) diffraction extrapolated to the necking point and the strength of the drawn fiber. This indicates that the molecular chains that bear the drawing stress also bear most of the applied stress during tensile testing of the resultant fiber. In addition, considering the drawing-stress dependence of the d-spacing and the molecular weight distribution of the fiber revealed that molecular chains with molecular weights over 23,000 g/mol bear the majority of tensile force applied to the fiber.

Ionization potentials of metal clusters studied with a broad range, tunable vacuum ultraviolet light source.

In this work, we present an alternative to complex laser setups or synchrotron light sources to accurately measure the ionization potentials of metal clusters. The setup is based on a commercial Xe flash lamp, combined with a vacuum monochromator, and has been applied to determine the ionization potentials of Snn clusters with n = 8-12 atoms. The uncertainty in the determination of the ionization potentials is mainly caused by the bandwidth of the monochromator. The adiabatic ionization potentials (AIPs) are extracted from experimental photoionization efficiency curves. Franck-Condon simulations are additionally used to interpret the shape and onset of the photo-ion yield. The obtained AIPs are (all energies are in eV) Sn8 (6.53 ± 0.05), Sn9 (6.69 ± 0.04), Sn10 (6.93 ± 0.03), Sn11 (6.34 ± 0.05), and Sn12 (IsoI 6.64 ± 0.04 and IsoIII 6.36 ± 0.05). Furthermore, the impact of multiple isomers present in the experiment on the photo-ion yield is addressed and compared with other experimental data in the literature.

Functionalization of SPION nanoparticle with malic acid for the development of superfinish optical surface

Optical instruments such as X-ray optics, high-power laser systems, synchrotron beamlines, lithography, and laser-based sensors, require a superfine optical surface to meet their tight optical performance tolerances. This study describes the development of a nanocomposite-based nanoabrasive that can provide a superfinish optical surface via optical polishing. The Malic acid as an organic surface modifier is functionalized with the superparamagnetic iron oxide nanoparticles (SPION). Strong chemical attachment between SPION nanoparticles and the Malic acid is verified through fourier transform infrared spectroscopy. A significant enhancement in the surface area and zeta potential value of SPION nanoparticles is observed when it is functionalized with the Malic Acid. The particle size distribution of the functionalized nanoabrasive is also narrowed down to 8–26 nm. The polishing performance of the functionalized SPION nanoabrasive has been investigated on the BK7 and Fused Silica glasses for precision optical polishing. The polishing results showed superfine surface finishing of the BK7 glass and the Fused silica glass down to the Ra value of 0.23 nm and 0.1 nm, respectively.

Intersubunit Coupling Enables Fast CO2-Fixation by Reductive Carboxylases.

Enoyl-CoA carboxylases/reductases (ECRs) are some of the most efficient CO2-fixing enzymes described to date. However, the molecular mechanisms underlying the extraordinary catalytic activity of ECRs on the level of the protein assembly remain elusive. Here we used a combination of ambient-temperature X-ray free electron laser (XFEL) and cryogenic synchrotron experiments to study the structural organization of the ECR from Kitasatospora setae. The K. setae ECR is a homotetramer that differentiates into a pair of dimers of open- and closed-form subunits in the catalytically active state. Using molecular dynamics simulations and structure-based mutagenesis, we show that catalysis is synchronized in the K. setae ECR across the pair of dimers. This conformational coupling of catalytic domains is conferred by individual amino acids to achieve high CO2-fixation rates. Our results provide unprecedented insights into the dynamic organization and synchronized inter- and intrasubunit communications of this remarkably efficient CO2-fixing enzyme during catalysis.

Differing effects of inorganic and organic arsenic on uptake and distribution of multi-elements in Rice grain.

Arsenic (As) pollution can lead to an element imbalance in rice. A hydroponic study was carried out to examine the influence of inorganic (arsenate) and organic (dimethylarsinic acid (DMA)) arsenic compounds on the concentration and distribution of iron (Fe), manganese (Mn), copper (Cu), zinc (Zn), nickel (Ni), carbon (C), nitrogen (N), and sulfur (S) in rice caryopsis at maturity using laser confocal microscopy and synchrotron X-ray fluorescence (SXRF). Results showed that treatments with inorganic (iAs) and organic (DMA) arsenic did not change the distribution characteristics of the above elements in rice grains. Fe, Mn, and iAs were mainly limited to the ventral ovular vascular trace, while Cu, Zn, and DMA extended into the endosperm. This implies that milling processes are likely to remove a majority of Fe, Mn, and iAs, but not Cu, Zn, and DMA. With regard to the average fluorescent intensity of the rice endosperm, iAs exposure caused significant reductions in Mn (53%), Fe (40%), Cu (27%), and Zn (74%) while DMA treatments decreased Mn (49%), Fe (37%), and Zn (21%). Compared with DMA, iAs exerted more influence on the reduction of these elements in rice caryopsis. In addition, the elemental analysis revealed a significant 12.7% increase for N and 8% reduction for S in DMA-treated rice caryopsis while a significant decrease of 24.0% for S in iAs-exposed rice caryopsis. These findings suggest that Cu, Zn, and S are more easily impacted by iAs, while N is mostly affected by DMA.

Relationship between Formulation, Gelation Kinetics, Micro/Nanostructure and Rheological Properties of Sodium Caseinate Nanoemulsion-Based Acid Gels for Food Applications

Legislation and concerns about health effects of trans and saturated fatty acids have led to elimination or reduction of them in foods formulation. One of the alternatives for structuring food with healthy ingredients is using food-grade biopolymers such as proteins or polysaccharides to formulate hydrogels. The aim of the present work was to study the relationship among formulation, gelation kinetics, structure, and rheological properties of sodium caseinate (NaCas)/sunflower oil hydrogels prepared from nanoemulsions. NaCas was used as stabilizer in concentrations of 1, 2, 3, or 4 wt.%. Sucrose was also added in 2, 4, 6, or 8 wt.% to the 4-wt.% nanoemulsion. Gelation kinetics was studied by two methods: oscillatory rheometry and Turbiscan. Although gelation time values were significantly different between methods, tendencies were similar: values decreased with increasing protein and sucrose contents. However, the most influential factor on gelation time was the ratio glucono-delta-lactone (GDL)/NaCas. Structure was analyzed by confocal laser scanning microscopy and synchrotron X-ray microtomography. Low-protein content hydrogels (1 or 2 wt.%) had an inhomogeneous structure containing nano- and conventional-size droplets while the 4-wt.% hydrogel kept the initial structural characteristics: homogeneity in dispersed phase distribution and non-aggregated nanodroplets. Sucrose improved structure in terms of homogeneity. Analyses of X-ray microtomoghraphy data showed that while the porosity diminished, the wall width increased with increasing protein and sucrose contents. The hydrogel formulated with 4 wt.% NaCas and 8 wt.% sucrose showed a structure with nanodroplets evenly distributed and the highest G′∞ values of all hydrogels.

Acceleration of electrons by a laser pulse at its output onto an optical surface of the vacuum – transparent medium interface. Laser synchrotron

We consider the electron dynamics in the field of an electromagnetic wave produced at the vacuum – transparent medium interface upon reflection from the boundary, close to total internal reflection. The propagation velocity of a constant phase of the electromagnetic wave along the interface can vary from to infinity ( is the speed of light in vacuum, and is the refractive index of the medium at the interface). In this case, there emerge regions of positive and negative phases of the field with wavelengths, approximately equal to half the wavelength of the original laser beam, which can propagate at a speed close to that of light in vacuum. If a beam of relativistic electrons propagates along the surface, they can gain energy and accelerate, as well as radiate. With closed trajectories of electron motion, a laser synchrotron will be implemented as a result of many acceleration cycles.

Advanced environmental control as a key component in the development of ultrahigh accuracyex situmetrology for x-ray optics

The advent of fully coherent free-electron laser and diffraction-limited synchrotron radiation storage ring sources of x-rays is catalyzing the development of new ultrahigh accuracy metrology methods. To fully exploit these sources, metrology needs to be capable of determining the figure of an optical element with subnanometer height accuracy. The major limiting factors of the current absolute accuracy of ex situ metrology are drift errors due to temporal instabilities of the lab’s environmental conditions and systematic errors inherent to the metrology instruments. Here, we discuss in detail work at the Advanced Light Source X-Ray Optics Laboratory on building of advanced environmental control that is a key component in the development of ultrahigh accuracy ex situ metrology for x-ray optics. By a few examples, we show how the improvement of the environmental conditions in the lab allows us to significantly gain efficiency in performing ex situ metrology with high-quality x-ray mirrors. The developed concepts and approaches, included in the design of the new X-Ray Optics Laboratory, are described in detail. These data are essential for construction and successful operation of a modern metrology facility for x-ray optics, as well as high-precision measurements in many fields of experimental physics.

Bacteria-zinc co-localization implicates enhanced synthesis of cysteine-rich peptides in zinc detoxification when Brassica juncea is inoculated with Rhizobium leguminosarum.

Some plant growth promoting bacteria (PGPB) are enigmatic in enhancing plant growth in the face of increased metal accumulation in plants. Since most PGPB colonize the plant root epidermis, we hypothesized that PGPB confer tolerance to metals through changes in speciation at the root epidermis. We employed a novel combination of fluorophore-based confocal laser scanning microscopic imaging and synchrotron based microscopic X-ray fluorescence mapping with X-ray absorption spectroscopy to characterize bacterial localization, zinc (Zn) distribution and speciation in the roots of Brassica juncea grown in Zn contaminated media (400 mg kg−1 Zn) with the endophytic Pseudomonas brassicacearum and rhizospheric Rhizobium leguminosarum. PGPB enhanced epidermal Zn sequestration relative to PGBP-free controls while the extent of endophytic accumulation depended on the colonization mode of each PGBP. Increased root accumulation of Zn and increased tolerance to Zn was associated predominantly with R. leguminosarum and was likely due to the coordination of Zn with cysteine-rich peptides in the root endodermis, suggesting enhanced synthesis of phytochelatins or glutathione. Our mechanistic model of enhanced Zn accumulation and detoxification in plants inoculated with R. leguminosarum has particular relevance to PGPB enhanced phytoremediation of soils contaminated through mining and oxidation of sulphur-bearing Zn minerals or engineered nanomaterials such as ZnS.

Iterative phasing for fluctuation X-ray scattering

Fluctuation X-ray scattering (FXS) is an extension of small- and wide-angle X-ray scattering in which the X-ray snapshots are taken below rotational diffusion times. This technique, performed using a free electron laser or ultrabright synchrotron source, provides significantly more experimental information compared with traditional solution scattering methods. We develop a multitiered iterative phasing algorithm to determine the underlying structure of the scattering object from FXS data.

Real-time investigation of dynamic protein crystallization in living cells.

X-ray crystallography requires sufficiently large crystals to obtain structural insights at atomic resolution, routinely obtained in vitro by time-consuming screening. Recently, successful data collection was reported from protein microcrystals grown within living cells using highly brilliant free-electron laser and third-generation synchrotron radiation. Here, we analyzed in vivo crystal growth of firefly luciferase and Green Fluorescent Protein-tagged reovirus μNS by live-cell imaging, showing that dimensions of living cells did not limit crystal size. The crystallization process is highly dynamic and occurs in different cellular compartments. In vivo protein crystallization offers exciting new possibilities for proteins that do not form crystals in vitro.

Molten uranium dioxide structure and dynamics.

Uranium dioxide (UO2) is the major nuclear fuel component of fission power reactors. A key concern during severe accidents is the melting and leakage of radioactive UO2 as it corrodes through its zirconium cladding and steel containment. Yet, the very high temperatures (>3140 kelvin) and chemical reactivity of molten UO2 have prevented structural studies. In this work, we combine laser heating, sample levitation, and synchrotron x-rays to obtain pair distribution function measurements of hot solid and molten UO2. The hot solid shows a substantial increase in oxygen disorder around the lambda transition (2670 K) but negligible U-O coordination change. On melting, the average U-O coordination drops from 8 to 6.7 ± 0.5. Molecular dynamics models refined to this structure predict higher U-U mobility than 8-coordinated melts.

In-vivo brain blood flow imaging based on laser speckle contrast imaging and synchrotron radiation microangiography

In-vivo imaging of blood flow in the cortex and sub-cortex is still a challenge in biological and pathological studies of cerebral vascular diseases. Laser speckle contrast imaging (LSCI) only provides cortex blood flow information. Traditional synchrotron radiation micro-angiography (SRA) provides sub-cortical vasculature information with high resolution. In this study, a bolus front-tracking method was developed to extract blood flow information based on SRA. Combining LSCI and SRA, arterial blood flow in the ipsilateral cortex and sub-cortex was monitored after experimental intracerebral hemorrhage of mice. At 72 h after injury, a significant blood flow increase was observed in the lenticulostriate artery along with blood flow decrease in cortical branches of the middle cerebral artery. This combined strategy provides a new approach for the investigation of brain vasculature and blood flow changes in preclinical studies.

Probing ultrafast dynamics in electronic structure of epitaxial Gd(0 0 0 1) on W(1 1 0)

The electronic and magnetic properties of Gd have been studied using time- and angle-resolved photoelectron spectroscopy employing laser pump and synchrotron radiation probe pulses. The static temperature evolution of the valence band and more precisely, the 5d6s exchange splitting is reported. Ultrafast demagnetization is measured using dichroic resonant Auger spectroscopy. Remarkably, a complete demagnetization is observed followed up by a non-monotonic recovery that could be associated to magnetization oscillations.

System of laser pump and synchrotron radiation probe microdiffraction to investigate optical recording process

We have developed a system of laser-pump and synchrotron radiation probe microdiffraction to investigate the phase-change process on a nanosecond time scale of Ge2Sb2Te5 film embedded in multi-layer structures, which corresponds to real optical recording media. The measurements were achieved by combining (i) the pump-laser system with a pulse width of 300 ps, (ii) a highly brilliant focused microbeam with wide peak-energy width (ΔE∕E ~ 2%) made by focusing helical undulator radiation without monochromatization, and (iii) a precise sample rotation stage to make repetitive measurements. We successfully detected a very weak time-resolved diffraction signal by using this system from 100-nm-thick Ge2Sb2Te5 phase-change layers. This enabled us to find the dependence of the crystal-amorphous phase change process of the Ge2Sb2Te5 layers on laser power.

Spatial and spectral characteristics of linear laser synchrotron radiation with few-cycle laser pulse

Based on the classical radiation theory, the spatial and spectral characteristics of linear scattering with linearly polarized few-cycle pulses have been obtained. Most of the radiation is sharply centered in the backward direction. The research results show that the shorter the duration of the few-cycle pulse is, the wider the backward scattering spectrum, the bigger backward scattered central frequency of the spectrum and the weaker intensity of the spectrum are. It is discovered that the influence of the initial phase on the spectrum of the radiation is apparent for low and high frequency of the spectrum, but there is no influence of the central part of the spectrum.

The analysis of microscopy imaging on liquid crystalline components of the cell nucleus

Dinoflagellates nuclei allow for liquid crystalline characterization without core histones. In this study, nuclei were isolated from the athecate Karenia dinoflagellate species with minimum destruction to their native structure during preparation procedures. The liquid crystalline nuclei were studied by microscopy techniques of Metripol birefringence microscopy, Confocal Laser Scanning Microscopy (CLSM) and synchrotron radiation-based hard X-ray Microscopy with computed tomography, respectively. The 3D reconstruction techniques of hard X-ray tomography and CLSM were also discussed. The important biophysical parameters of the interspaces between chromosomes, nuclear surface areas and chromosome-occupied volumes were calculated from a 3D rendering of a reconstructed nucleus. The results of calculated average chromosomal DNA concentration of dinoflagellate was consistent with the concentration which can spontaneously assemble into the cholesteric liquid crystal phase in vitro.

Extremely Correlated Fermi-Liquid Description of Normal-State ARPES in Cuprates

The normal-state single particle spectral function of the high temperature superconducting cuprates, measured by the angle-resolved photoelectron spectroscopy (ARPES), has been considered both anomalous and crucial to understand. Here, we report an unprecedented success of the new extremely correlated Fermi liquid theory by one of us [B. S. Shastry, Phys. Rev. Lett. 107, 056403 (2011)] to describe both laser and conventional synchrotron ARPES data (nodal cut at optimal doping) on Bi(2)Sr(2)CaCu(2)O(8+δ) and synchrotron data on La(1.85)Sr(0.15)CuO(4). It fits all data sets with the same physical parameter values, satisfies the particle sum rule and successfully addresses two widely discussed kink anomalies in the dispersion.

Fully relativistic calculation of x-ray scattering in H-like ions

The research in intense coherent x-ray production from free electron lasers, and investigations in interaction of laser radiation and synchrotron radiation with atoms, molecules and clusters, opens a broad opportunity for experimental measurements of x-ray scattering on the inner shells of heavy atoms and molecules. For x-ray photons, the accuracy of the dipole approximation may be not enough and retardation needs to be included. So the fully relativistic calculations are interesting in the case of x-ray scattering, especially for above-threshold photons. But such calculations require complicated relativistic expressions. This report deals with the fully relativistic photon scattering processes of H-like ions as the model of scattering on the inner shells. Simple general expressions are obtained for two-photon processes on H-like ions. Numerical calculations of analytical functions give exact results under and above a threshold.