Juvenile Salmonids Research Articles

Proteomic analysis of temperature-dependent developmental plasticity within the ventricle of juvenile Atlantic salmon (Salmo salar).

In teleosts, cardiac plasticity plays a central role in mediating thermal acclimation. Previously, we demonstrated that exposure to elevated temperatures throughout development (+4°C) improved acute thermal tolerance of the heart in juvenile Atlantic salmon. Fish raised in a warmer thermal regime also displayed higher proportions of compact myocardium within their ventricles. In the present study, we investigated the molecular mechanisms supporting this temperature-specific phenotype by comparing relative protein abundance in ventricular tissue from the same experimental fish using mass spectrometry. We provide the first description of the ventricular proteome in juvenile Atlantic salmon and identify 79 proteins displaying differential abundance between developmental treatments. The subset of proteins showing higher abundance in fish raised under elevated temperatures was significantly enriched for processes related to ventricular tissue morphogenesis, and changes in protein abundance support a hypertrophic model of compact myocardium growth. Proteins associated with the vasculature and angiogenesis also showed higher abundance in the warm-developmental group, suggesting capillarization of the compact myocardium in the hearts of these fish. Proteins related to oxidative metabolism and protein homeostasis also displayed substantive shifts in abundance between developmental treatments, underscoring the importance of these processes in mediating thermal plasticity of cardiac function. While rapid growth under warm developmental temperatures has been linked to cardiomyopathies in farmed salmon, markers of cardiac pathology were not implicated in the present study. Thus, our findings offer a molecular footprint for adaptive temperature-dependent plasticity within the ventricle of a juvenile salmonid.

Distribution and prevalence of the myxozoan parasite Tetracapsuloides bryosalmonae in northernmost Europe: analysis of three salmonid species.

Global climate change is altering the abundance and spread of many aquatic parasites and pathogens. Proliferative kidney disease (PKD) of salmonids caused by the myxozoan Tetracapsuloides bryosalmonae is one such emerging disorder, and its impact is expected to increase with rising water temperature. Yet, the distribution and prevalence of T. bryosalmonae in Northern Europe remain poorly characterized. Here, we studied 43 locations in 27 rivers in northernmost Norway and Finland to describe T. bryosalmonae infection frequency and patterns in 1389 juvenile salmonids. T. bryosalmonae was discovered in 12 out of 27 rivers (44%) and prevalence ranged from 4.2 to 55.5% in Atlantic salmon and from 5.8 to 75% in brown trout among infected rivers. In sympatric populations, brown trout was more frequently infected with T. bryosalmonae than was salmon. Age-specific parasite prevalence patterns revealed that in contrast to lower latitudes, the infection of juvenile fish predominantly occurs during the second summer or later. Temperature monitoring over 2 yr indicated that the mean water temperature in June was 2.1 to 3.2°C higher in rivers containing T. bryosalmonae compared to parasite-free rivers, confirming the important role of temperature in parasite occurrence. Temporal comparison in T. bryosalmonae prevalence over a 10 yr period in 11 rivers did not reveal any signs of contemporary parasite spread to previously uninfected rivers. However, the wide distribution of T. bryosalmonae in rivers flowing to the Barents Sea indicates that climate change and heat waves may cause new disease outbreaks in northern regions.

High summer macrophyte cover increases abundance, growth, and feeding of juvenile Atlantic salmon.

Aquatic habitats are severely threatened by human activities. For anadromous species, managing freshwater habitats to maximize production of more, larger juveniles could improve resilience to threats in marine habitats and enhance population viability. In some juvenile salmonid habitats, complexity created by large substrates provides resources and reduces competitive interactions, thereby promoting juvenile production. In lowland rivers, which lack large substrates, aquatic plants might provide similar complexity and enhance fish productivity. To test the influence of aquatic plants on juvenile Atlantic salmon and sympatric brown trout in a lowland river, we directly manipulated the cover of the dominant macrophyte, Ranunculus, in nine sites during summer and autumn for two years. We quantified the abundance, site retention and growth of salmon and trout under high, medium or low Ranunculus cover. To investigate the effects of Ranunculus cover on feeding opportunities and interspecific competition, we quantified available prey biomass and body size, fish diet composition and compared dietary niche overlap. Experimentally increased Ranunculus cover supported higher salmon abundance in summer and autumn, and higher site retention and growth of salmon in summer. Trout abundance and growth were not influenced by Ranunculus cover, but trout site retention doubled in high, relative to low, cover sites. Despite the weak effects of Ranunculus cover on prey availability, salmon and trout inhabiting high cover sites consumed larger prey and a higher biomass of prey. Furthermore, dietary niche overlap was lower in high, relative to low, cover sites, suggesting that abundant Ranunculus reduced interspecific competition. This field experiment shows that high Ranunculus cover can support more and better growing juvenile salmon, and facilitate foraging and co-existence of sympatric salmonid species. Maintaining or enhancing natural macrophyte cover can be achieved through sympathetic in-river and riparian vegetation management and mitigating pressures on them, such as sediment inputs and low flows, or through planting. Further research should test whether macrophyte cover benefits propagate to subsequent life stages, particularly juvenile overwintering associated with high mortality. This knowledge, in combination with our findings, would further clarify whether beneficial juvenile habitat can improve the viability of at-risk salmonid populations. Overall, our findings suggest that the aims of river restoration might be achieved through promotion of in-stream aquatic vegetation.

Wild juvenile salmonid abundance in Wisconsin tributaries indicates limited contributions to Lake Michigan fisheries

Natural reproduction of salmonids occurs in many Lake Michigan tributaries, yet little is known about abundance and the potential contribution of wild fish hatching in Wisconsin tributaries. The objectives of our study were to determine if: 1) abundance of wild juvenile salmonids (primarily adfluvial rainbow trout, Oncorhynchus mykiss, referred to as steelhead) varied among selected Wisconsin streams based on available spawning and age-0 habitat; 2) stream temperature regimes could limit survival of juvenile salmonids, and 3) wild juvenile salmonids outmigrate from Wisconsin tributaries into Lake Michigan or larger tributaries. In 2016 and 2017, juvenile salmonid abundance was estimated in six Wisconsin tributaries to Lake Michigan by multiple-pass depletion sampling using backpack electrofishing. Habitat assessments included steelhead redd surveys, age-0 habitat surveys, and stream temperatures were monitored using in-stream loggers. Passive integrated transponder (PIT) tagging and PIT antennas were used to detect outmigration from three streams (Willow, Stony and Hibbard creeks). Population estimates for individual streams ranged from 75 to 2276 for juvenile steelhead and from 0 to 243 for juvenile coho salmon, Oncorhynchus kisutch. No correlation was detected between juvenile steelhead abundance and quality age-0 habitat. Stream temperatures rarely exceeded the thermal limit for steelhead (27 °C). Outmigration rates for three streams ranged from 0.6% to 3.1%, but these estimates were considered minimum values. Low abundance of wild juvenile steelhead and coho salmon alone suggest that the contributions of these tributaries to Lake Michigan fisheries are likely small. Furthermore, relying on returns of wild steelhead produced in these streams is probably insufficient to maintain stream fisheries.

Predator life history and prey ontogeny limit natural selection on the major armour gene,Eda, in threespine stickleback

AbstractNatural selection shapes the evolution of antipredator traits in prey. However, selection in the wild depends on ecological context, including features of predator and prey populations, making field studies of selection critical to understanding how predators shape selection on prey defences. Threespine stickleback (Gasterosteus aculeatus) is a classic system to study the effects of predators on the natural selection of prey. In lakes and rivers, fish predators have been shown to impose selection against low plated adult stickleback phenotypes and genotypes. We directly measured selection by predatory salmonids on theEctodysplasin‐A(Eda) gene in estuary stickleback from California. Despite previous studies showing a positive correlation between predator presence and frequency of theEda“complete” allele in estuary populations, we found thatEda“low” genotypes were not significantly more frequent in salmonid predator diets. Further, we found no evidence of changes inEdagenotype frequencies across generations that would suggest directional selection driven by predators. Prior selection studies have examined the effects of large resident trout on adult stickleback. In contrast, predators in this study were juvenile anadromous salmonids, which only ate juvenile stickleback whose plate phenotypes had not fully developed. Thus, in this case, predator life history and stickleback ontogeny may preclude strong selection on stickleback armour. Our results underscore the importance of selection studies in the wild for understanding the context‐dependent nature of selection in natural populations.

Damming salmon fry: evidence for predation by non‐native warmwater fishes in reservoirs

AbstractComplex predator–prey interactions over time have the potential to limit survival of threatened native species. Reservoirs created by large dams in temperate ecosystems are sites where both coldwater and warmwater fish species overlap in distributions, forming assemblages that would not occur under natural settings. For example, in many western North American reservoirs, juvenile native salmonids now overlap with native and non‐native predators such as Northern Pikeminnow Ptychocheilus oregonensis and bass Micropterus spp. Currently, native Northern Pikeminnow are considered by many to be the most formidable predator of salmon smolts in freshwater systems of the Pacific Northwest. However, their consumption of salmon fry and the role of non‐native warmwater predators remain unclear. Predation on fry has proved more difficult to identify than on smolts, due to smaller sizes and high digestibility, but is important for prioritizing management strategies. Here, we use multiple lines of evidence, including large datasets of stable isotopes and fish stomach contents, to identify which fish consume Chinook Salmon Oncorhynchus tshawytscha fry (<55 mm) as they enter reservoirs below their spawning grounds in the Middle Fork Willamette River, Oregon. Unexpectedly, we found that non‐native warmwater game fishes, including bass and crappie Pomoxis spp., preyed more heavily on Chinook Salmon fry in the spring than native fish predators including Northern Pikeminnow. Of the native species, only Rainbow Trout Oncorhynchus mykiss showed evidence for significant predation on Chinook Salmon fry. Fish management in reservoirs that attempts to promote both warmwater and coldwater recreational fisheries simultaneously may thus be in conflict, necessitating future prioritization of species composition in individual reservoirs. This prioritization is especially important as these species include popular game fishes as well as salmonids threatened under the U.S. Endangered Species Act. Understanding predation pressure by popular invasive game fishes on sensitive life stages will allow managers and policymakers to evaluate trade‐offs in the management of these novel assemblages.

A large dataset of detection and submeter-accurate 3-D trajectories of juvenile Chinook salmon

Acoustic telemetry has been used extensively to study the behavior of aquatic animals. The Juvenile Salmon Acoustic Telemetry System (JSATS) is one such system; it was developed for studying juvenile salmonids but has been used to study numerous species. A recent innovation of the JSATS system is an acoustic transmitter that is small enough to be implanted through injection or small incision that doesn’t require sutures. Use of the JSATS system involves deploying cabled acoustic receivers at hydroelectric dams, or other structures, and autonomous acoustic receivers in free-flowing sections of a river. The raw detections from acoustic-tagged fish are processed to remove potential false positives. The clean detections (5,147,996 total) are used to generate detection events and to compute 3-D trajectories (403,900 total), which are used to assign fish to a passage route through a dam. Controlled field testing involving a high-accuracy Global Positioning System receiver is done to validate the submeter accuracy of the trajectories. The JSATS dataset could be reused for expanding the understanding of near-dam fish behavior.

Reducing River Flows to Control a Parasitic Salmonid Disease in the Klamath River: Simulations Question the Efficacy of Desiccation as a Management Tool

AbstractAquatic parasites cause disease in economically and culturally important Klamath River salmonids Oncorhynchus spp., and the myxozoan parasite Ceratonova shasta has been linked to high juvenile salmonid mortality. Because C. shasta requires the freshwater annelid Manayunkia occidentalis to complete its life cycle, management approaches have focused on disrupting annelid populations to reduce C. shasta and disease risk for salmonids. Previous studies have demonstrated that manipulating river discharge to achieve short‐term, high‐flow events is effective for disturbing annelids. There is also interest in the efficacy of manipulating river discharge to desiccate annelids to reduce disease risk. To investigate the efficacy of reducing streamflow to desiccate annelids, we simulated the amount of annelid habitat, categorized by quality, that would be dewatered as discharge was incrementally reduced. Simulations were accomplished by coupling two‐dimensional hydrodynamic models with an annelid presence/absence model. Simulations were conducted for three study sites located on the Klamath River main stem downstream of Iron Gate Dam, where discharge can be manipulated. Reductions in discharge from June base flow (31.2 m3/s or 1,100 ft3/s) to the lowest simulated discharge rate (17.0 m3/s; approximately half of base flow) resulted in an 11.8% reduction of the total wetted area of the river across all three study sites combined. For the same discharge simulation, reductions in annelid habitat differed based on the quality of habitat, with low‐ quality (<0.20 probability of annelids) to moderate‐quality (0.20–0.80 probability of annelids) habitat reduced by 8.3% (95% credible interval = 7.5–10.3) and 23.7% (10.7–27.5), respectively, while high‐quality habitat (>0.80 probability of annelids) was never desiccated. These results suggest that desiccation is unlikely to offer an effective solution for managing myxozoan parasites of salmonids that are transmitted by annelids because reducing streamflow had minimal effects on the amount of annelid habitat.

Juvenile Chinook salmon use of sandbar willows in a large-scale, simulated riparian floodplain: microhabitat and energetics

Outmigrating, juvenile Chinook salmon Oncorhynchus tshawytscha, with access to floodplains (e.g., Yolo Bypass California, USA), grow faster than those restricted to the main channel of the Sacramento River. How these young salmon might use rooted, vegetative structure (e.g., to decrease energy expenditures) while holding positions in flowing water on floodplains and flooded riparian zones is unknown. We conducted daytime experiments in a large (24.4 m long) flume containing a planted area (9.76 m × 1.22 m) of sandbar willows, Salix interior. Flume water was maintained at 1.5 m depth and 16 °C over a 15–90 cm s−1 test velocity range. Fish were videoed using 19 cameras to determine positional behavior, including their depth, use of vegetation, and tail-beat (body-undulation) frequencies (TBFs). These TBFs were replicated with similarly-sized salmon in a calibrated, Brett-type swimming respirometer, where oxygen consumption rates were measured. Using these laboratory measurements, we estimated their swimming velocities and energetic costs associated with occupying sandbar willow habitats in the flume. As flume velocities increased and the leafy canopies of the willows were bent over from the flow, salmon occupied deeper water, among the thick stems of the willows, and maintained their positions. Even at the highest (90 cm s−1) nominal flume velocities, their estimated swimming velocities were only 35.6 cm s−1, within the bottom 15 cm of the water column. This resulted in unchanged energetic costs, compared with those estimated at lower nominal water velocities. The use of vegetated (e.g., with sandbar willow common to the riparian zone) floodplains, rather than non-vegetated ones, can potentially provide energy-saving, growth-promoting daytime habitat for migrating juvenile salmonids during river-flow periods that include floodplain inundation.

Not All Rivers Are Created Equal: The Importance of Spring-Fed Rivers under a Changing Climate

In the Western United States, volcanic spring-fed rivers are anticipated to become increasingly more important for salmonids and other native fishes, as these rivers will retain coldwater habitats as the climate warms. Despite this, little is known about the hydro-biogeochemical interactions within these ecosystems. A review of existing literature on spring-fed rivers, coupled with a decade of research on volcanic spring-fed rivers of northern California, finds that these systems are exceptionally productive and exhibit stable environmental conditions. These unique conditions stem from hydrogeologic processes typical of young volcanic terrains. Aquatic macrophytes, common to some nutrient-rich spring-fed systems, play a disproportionate role in hydrologic and geomorphic processes by facilitating ecological interactions and velocity conditions that improve juvenile salmonid growth. We find that volcanic spring-fed rivers are also resilient to climate change, due not only to their ability to dampen water temperature changes through deep groundwater flow but also because of their nutrient-driven high ecosystem productivity, which may enable coldwater species to metabolically compensate for marginal increases in water temperature. Understanding the fundamental geomorphic and ecological differences between these rare ecosystems and their numerically dominant runoff rivers is essential for developing long-term conservation strategies for coldwater species under a rapidly changing climate.

High precision 3-D coordinates for JSATS tagged fish in an acoustically noisy environment

BackgroundAcoustic tagging methods have been used to track fish for some time. Multiple systems have been developed, including those that give researchers the ability to position fish in three dimensions and time. However, proprietary positioning methods have suffered from a lack of transparency. The U.S. Department of Energy and the U.S. Army Corps of Engineers developed the Juvenile Salmon Acoustic Telemetry System (JSATS) to monitor the survivability of juvenile salmonids as they migrate downstream. With much smaller tags and high ping rates, JSATS positioning studies should be more prevalent, but implementation is difficult and often out of reach for small budget-minded studies. This study implemented a small scale JSATS positioning study using relatively inexpensive, autonomous, independent receivers. We will show that proper synchronization of the transmissions and elimination of multipath allows the positions of a smolt to be determined in three spatial dimensions over time with high precision.ResultsTracking of 172 tagged smolts produced a total of nearly 2,00,000 positions. We compared the performance of four different supervised machine learning classifiers (Support Vector Classifier (SVC), Gaussian Naïve Bayes (NB), Classification Tree (CART), and K-Nearest Neighbor (KNN). All algorithms performed well with high accuracy and precision, but recall rates decreased with distance from the source. The SVC and KNN were least restrictive in practice. Overall, the SVC had the longest time to solve.ConclusionPositions determined from fish outside of the convex hull of the hydrophones were effectively being extrapolated, while positions determined from within the convex hull nearly always met or exceeded 1-m precision. Having stationary submerged hydrophones was necessary to produce three-dimensional positions. The main technical advances presented are the hydrophone-clock synchronization scheme and the multipath rejection scheme, which found the best multipath classifier to be the K-Nearest Neighbor. Neither algorithm was capable of alleviating close proximity detection interference (CPDI), suggesting the need to reposition receivers from reflective surfaces or install baffling.

Mechanisms of density dependence in juvenile salmonids: prey depletion, interference competition, or energy expenditure?

AbstractDensity dependence is a strong regulator of animal populations, operating primarily through intraspecific competition for a limiting resource. Because food is generally limited in natural environments, it is typically assumed that increasing animal density leads to reduced individual fitness through food depletion or monopolization. However, recent work demonstrates that density dependence can occur without apparent food depletion, or with virtually unlimited resources, suggesting that other mechanisms must also be important. Alternatively, density‐dependent regulation could be achieved through increasing energy costs rather than decreasing food abundance. The relative importance of these two processes (food depletion and energy costs) and their underlying mechanisms remains unclear. Here, we manipulated the density of juvenile stream‐dwelling brook trout (Salvelinus fontinalis) in three neighboring populations over two consecutive summers to relate food availability and consumption to density‐dependent growth, survival, and their trade‐off. Despite strong patterns of density dependence and evidence of food limitation, increasing fish density did not lead to detectable prey depletion in the environment. Instead, behavioral observations suggested that increasing densities resulted in higher energetic costs, primarily via increasing interference competition and the use of less suitable foraging microhabitats. These results highlight that animal populations may be regulated by density dependence without necessarily impacting prey communities.

INFECTION OF COREGONIDS OF CHIVYRKUISKY BAY OF LAKE BAIKAL AND TSIPO-TSIPICANSKIYE LAKES BY TRIAENOPHORUS CRASSUS PLEROCERCOIDS

Triaenophorus crassus is the causative agent of muscular trienophorosis in fish, especially pathogenic for juvenile salmonids and coregonids. The purpose of this work was to analyze the infection of coregonids with T. crassus plerocercoids in the Chivyrkuisky Bay of the Lake Baikal and Tsipo-Tsipikanskiye (Bauntovskie) lakes (basin of the Lena River, Transbaikalia). Level of infection with plerocercoids T. crassus in coregonids from 1976 to 2013 in the Chivyrkuisky Bay of the Lake Baikal did not cause concern: the prevalence in the Baikal omul did not exceed 23.6%; intensity was no more than 6 specimens; the prevalence in the Baikal whitefish is up to 5.0%. At the same time, in 1954, in the Chivyrkuisky Bay, a higher level of infection of the Baikal omul was noted (the prevalence was 44.4%; the intensity was 1–9 specimens), which does not allow us to exclude a recurrence of this situation in the future. There was a sharply different situation in terms of infection of coregonids with T. crassus plerocercoids in two lakes of the Tsipo-Tsipikanskaya group: in the lake Bolshoye Kapilyushi, the prevalence of this cestoda is ten times higher than in the lake Baunt. It is likely that such contrasting levels of infection were associated with the difference in the location of the habitats of pike (the definitive host of T. crassus) and coregonids in these lakes: the coincidence in the lake Bolshoye Kapylyushi and divergence in the lake Baunt.

Passage and Survival of Juvenile Salmonid Smolts through Dams in the Columbia and Snake Rivers, 2010–2018

AbstractMinimizing the mortality and migration time of juvenile salmon (smolts) that pass through dams is a long‐standing objective in the pursuit of salmon recovery in the Columbia River basin. We compiled and analyzed 40 acoustic tag studies of juvenile salmonid that were performed between 2010 and 2018 at seven of the eight hydroelectric projects in the Federal Columbia River Power System. We found that the use of nonturbine routes decreased monotonically moving downstream from the Snake River to the main‐stem Columbia River dams and associated mortality differed substantially between the dams in the two rivers. Spillways were the predominant passage route at the main‐stem Columbia River dams. In contrast, passage was more common through the surface weirs and juvenile bypass systems at the dams in the Snake River, which generally provided higher survival. The observed stocks exhibited variable passage behaviors and mortalities, and the estimated probability that an individual would pass through all eight dams in the system without using a turbine route was 0.31, 0.47, and 0.60 for subyearling Chinook Salmon Oncorhynchus tshawytscha, yearling Chinook Salmon, and steelhead O. mykiss, respectively. Although subyearling Chinook Salmon were generally more likely to pass through a turbine route, they also experienced less turbine‐associated mortality than did the other stocks, especially steelhead. Notably, the proportion of smolts that passed through the spillway relative to the proportion of water through the spillway was lowest at Bonneville Dam, the largest and lowermost dam in the system. Bonneville Dam also stood out as having the highest proportion of smolts passing through turbines, but it was among the locations with the lowest rates of turbine‐associated mortality.

Virulence and Infectivity of UC, MD, and L Strains of Infectious Hematopoietic Necrosis Virus (IHNV) in Four Populations of Columbia River Basin Chinook Salmon

Infectious Hematopoietic Necrosis Virus (IHNV) infects juvenile salmonid fish in conservation hatcheries and aquaculture facilities, and in some cases, causes lethal disease. This study assesses intra-specific variation in the IHNV susceptibility of Chinook salmon (Oncorhynchus tshawytscha) in the Columbia River Basin (CRB), in the northwestern United States. The virulence and infectivity of IHNV strains from three divergent virus genogroups are measured in four Chinook salmon populations, including spring-run and fall-run fish from the lower or upper regions of the CRB. Following controlled laboratory exposures, our results show that the positive control L strain had significantly higher virulence, and the UC and MD strains that predominate in the CRB had equivalently low virulence, consistent with field observations. By several experimental measures, there was little variation in host susceptibility to infection or disease. However, a small number of exceptions suggested that the lower CRB spring-run Chinook salmon population may be less susceptible than other populations tested. The UC and MD viruses did not differ in infectivity, indicating that the observed asymmetric field prevalence in which IHNV detected in CRB Chinook salmon is 83% UC and 17% MD is not due to the UC virus being more infectious. Overall, we report little intra-species variation in CRB Chinook salmon susceptibility to UC or MD IHNV infection or disease, and suggest that other factors may instead influence the ecology of IHNV in the CRB.

Juvenile Coho and Chinook Salmon Growth, Size, and Condition Linked To Watershed‐Scale Salmon Spawner Abundance

AbstractAnadromous Pacific salmon Oncorhynchus spp. are semelparous, and resource subsidies from spawning adult salmon (marine‐derived nutrients [MDN]) benefit juvenile salmonids while they rear in freshwater. However, it is unclear if juvenile salmon populations respond predictably to the abundance of spawning salmon at the watershed scale. To address whether hypothesized benefits to rearing juveniles scale up to population and watershed scales, we examined juvenile Coho Salmon Oncorhynchus kisutch and Chinook Salmon O. tshawytscha growth, fork length, condition, and abundance as a function of MDN assimilation throughout the Unalakleet and North rivers in western Alaska. Additionally, a mark–recapture experiment provided abundance estimates of Coho Salmon smolts emigrating from these two rivers. Prior to spawning, residual MDN from past years offered little advantage to juvenile salmon. However, after the arrival of spawning adults, juveniles demonstrated a positive relationship between MDN and fish size, growth, and condition in fall and winter. Out‐migrating smolts also benefitted from MDN resources via increased size and growth rates. Coho Salmon smolt abundance was unrelated to total spawner biomass, but a positive relationship between MDN assimilation and smolt abundance suggested a possible effect on overwinter survival. Furthermore, similar trends in spawner biomass and the abundance of age‐1 smolts suggested that age at smolting was influenced by MDN. These relationships support the hypothesis that salmon spawner abundance during Coho and Chinook Salmon rearing is an important factor in the juvenile productivity of these species.

Artificial lights with different spectra do not alter detrimental attraction of young Chinook salmon and sockeye salmon along lake shorelines

Tabor RA, Perkin EK, Beauchamp DA, Britt LL, Haehn R, Green J, Robinson T, Stolnack S, Lantz DW, Moore ZJ. 2021. Artificial lights with different spectra do not alter detrimental attraction of young Chinook salmon and sockeye salmon along lake shorelines. Lake Reserv Manage. XX:XXX–XXX. Artificial light at night (ALAN) is common in lakes with developed shorelines, especially prevalent in the nearshore areas where juvenile fishes, including salmonids, are present. One concern is that fishes may be attracted to ALAN and become more vulnerable to predators. The use of longer wavelength lights has been suggested to reduce the effects of ALAN; however, the response in juvenile salmonids is not well known. We tested the hypothesis that longer wavelength lights would attract fewer subyearling Chinook salmon (Oncorhynchus tshawytscha) and sockeye salmon (O. nerka) than shorter wavelength lights. Test lights included 4 LED lights, an incandescent light, and a high-pressure sodium light (HPS). In total, 13 experimental trials were conducted in 2017 and 2018, and in total 1769 Chinook salmon and 870 sockeye salmon were collected with beach seines. The mean catch rate (number per beach seine set) of subyearling salmonids was 51.0 for lighted treatments but only 6.6 for control treatments (no light). In both years, we did not find any significant difference in catch rates for either species between either of the longer wavelength lights (red-filter and yellow-filter LED lights) and other lights, and thus we rejected the hypothesis that longer wavelength light would attract fewer subyearling salmonids. For these early life stages of salmon in shallow shoreline habitats, reducing the intensity of light present is likely more important than altering the spectral composition when trying to minimize maladaptive attraction to ALAN.

Transcriptomic and Histopathological Effects of Bifenthrin to the Brain of Juvenile Rainbow Trout (Oncorhynchus mykiss).

The increased global use of pyrethroids raises concern for non-target aquatic species. Bifenthrin, among the most predominantly detected pyrethroids in the environment, is frequently measured in water samples above concentrations reported to induce neuroendocrine and neurotoxic effects to several threatened and endangered fish species, such as the Chinook salmon and steelhead trout. To better characterize the neurotoxic effect of bifenthrin to salmonids, rainbow trout were treated with environmentally relevant concentrations of bifenthrin (15 and 30 ng/L) for two weeks and assessed for changes in transcriptomic profiles and histopathological alterations. The top bioinformatic pathways predicted to be impaired in bifenthrin-exposed trout were involved in gonadotropin releasing hormone signaling, the dysregulation of iron homeostasis, reduced extracellular matrix stability and adhesion, and cell death. Subsequent histopathological analysis showed a significant increase in TUNEL positive cells in the cerebellum and optic tectum of bifenthrin-treated trout, relative to controls (p < 0.05). These findings suggest that low, ng/L concentrations of bifenthrin are capable of dysregulating proper neuroendocrine function, impair the structural integrity of the extracellular matrix and cell signaling pathways in the brain, and induce apoptosis in neurons of juvenile salmonids following bifenthrin treatment, which is consistent with metabolomic profiles demonstrating a common target and mechanism.

Effects of landscape-scale hypoxia on Salish sucker and salmonid habitat associations: implications for endangered species recovery and management1

To understand the effects of widespread urbanization and agricultural impacts on recovery of Salish sucker (Catostomus sp. cf. catostomus), a federally threatened catostomid endemic to the lower Fraser Valley of British Columbia, we assessed (i) the current extent and effects of hypoxia on the distribution of Salish sucker and juvenile salmonids, (ii) potential drivers of hypoxia, and (iii) management options for hypoxia mitigation. Over 40% of sucker critical habitat experiences hypoxia (dissolved oxygen (DO) &lt; 4 mg·L–1) by late summer, indicating widespread noncompliance with water quality guidelines. The strong positive relationship between seasonal hypoxia and temperature (R2= 0.53) and negative relationship with streamflow (R2= 0.78) indicates that hypoxia is driven by a synergy among low summer flows, elevated temperatures, and high primary production associated with nutrient enrichment (eutrophication). Sucker show strong selection against high water temperatures and weaker negative selection against low DO; juvenile salmonids show very strong selection against both high temperatures and low DO. Climate projections for declining summer flows and elevated temperatures indicate worsening trends in DO without intensive watershed-scale management to reduce nutrient loads, maintain or increase flows, and riparian restoration to lower stream temperatures, control primary production, and inhibit growth of invasive reed canary grass (Phalaris arundinacea).

Phenological mismatch, carryover effects, and marine survival in a wild steelhead trout Oncorhynchus mykiss population

Climate-driven changes in the oceans, such as shifts in prey timing and abundance, could influence variability in population productivity of marine fishes. For example, according to the match/mismatch hypothesis, the temporal matching of the young salmon outmigration from freshwater to the ocean relative to the timing of availability of their prey could influence their marine survival. Indeed, understanding patterns and processes of marine survival is particularly pressing in many salmon and steelhead trout populations due to recent declines. To determine whether phenological mismatches between juvenile salmonids and their prey could contribute to low ocean survival, we analyzed the migration timing and ocean survival of 22,116 tagged juvenile steelhead trout Oncorhynchus mykiss over 12 years from the Wind River, Washington State, USA. We used a Bayesian multilevel modelling approach with variable selection to assess how survival was associated with body size, river exit date, the biological spring transition date (the day when northern zooplankton first appeared in the coastal region near the Columbia River estuary), and the degree of mismatch (the effect of the interaction between individual outmigration timing and biological spring transition date). The variables with the highest probability of contributing to individual survival were fish size (100%), river exit date (99%), the interaction between year and river exit date (91%), and the biological spring transition date (64%). Fish that were larger than average at outmigration had higher ocean survival, providing further evidence that freshwater growing conditions have carryover effects on marine survival. Years with greater annual phenological mismatches such as those years with late biological spring transition dates (i.e., occurring after June 1st), or warm sea surface temperatures, had sufficiently low marine survival to compromise recovery goals. Substantial intra-annual variation in outmigration timing buffered the population from inter-annual variation in optimal outmigration timing. Collectively these findings indicate that freshwater growing conditions, migration timing, and the timing of high-quality food availability in the nearshore coastal environment work in concert to influence individual survival and annual smolt-to-adult returns.