Contamination of natural resources, particularly water sources, by heavy metal ions, even at low concentrations, poses a significant threat to ecosystems and human health, underscoring the importance of developing sensors with point-of-use (POU) applications. To that end, a vibration-unit-equipped portable electrochemical system (vPES) capable of extremely sensitive detection of Pb2+ and Cd2+ in water is reported herein. The vibration unit enhances sensitivity by facilitating sample diffusion, and its compactness makes it suitable for point-of-use applications through mobile phone connectivity. The system also integrates Nafion and a graphite/bismuth-nanoplate-functionalized screen-printed carbon electrode to detect heavy metals efficiently. The approach implemented in this study and validated through experiments and simulations suggests that vibration-based mixing leads to 540 % and 511 % higher Pb2+ and Cd2+ detection efficiencies, respectively, than those in the absence of vibration. Additionally, the sensor exhibits the limits of detection of 0.98 and 1.65 nM for Pb2+ and Cd2+, respectively, in laboratory environments. Samples collected from the Nakdong River in Korea and real environmental specimens—freshwater, soil, and serum—validate the detection performance. Overall, this study highlights the potential of vPES as a rapid, sensitive POU sensor for heavy metal detection, thereby bolstering environmental and public health monitoring efforts.