Recently, the shale gas exploration of Lower Cambrian Qiongzhusi Formation in Sichuan Basin has made a great breakthrough. However, the pore characteristics and controlling factors of the shale-gas reservoir in the Qiongzhusi Formation are not clear, which hinders further exploration and development of shale gas. This paper focuses on the Qiongzhusi Formation in the Lower Cambrian of the Sichuan Basin. On the basis of mineral composition and the lithofacies types of shale-gas reservoirs in Qiongzhusi Formation were classified by microscopic observation. Additionally, focused ion beam-scanning electron microscope (FIB-SEM), advanced mineral identification and characterization system (AMICS) analysis, large-field stitching scanning electron microscope technology (MAPS) and nitrogen adsorption experiment were employed to comprehensively determine the differential characteristics and controlling factors of pore development. The results indicate that the pore types in Qiongzhusi Formation are mainly composed of interparticle pores and intercrystalline pores. The pore structure of Qiongzhusi Formation is complex. Significant differences in pore structure parameters are observed among different lithofacies. Quartz and feldspar contribute to the preservation of primary pores due to their strong compressive resistance. Clay minerals and carbonate minerals impede pore development by occluding pores. The influence of organic matter on the pore development is relatively small. According to the mineral composition and pore parameters, laminated shale is a relatively favorable reservoir facies among different lithofacies types.