Intra-aggregate Pore Space Research Articles

How can pore characteristics of soil aggregates from contrasting tillage systems affect their intrinsic permeability and hydraulic conductivity?

Studies on how the alteration in the soil pore architecture can influence the permeability of small soil aggregates are still scarce. These aggregates affect the water dynamics mainly at the intra-aggregate pore scale. Thus, investigating the intra-aggregate pore space properties becomes crucial for comprehending the matter and energy transported into the soil. This paper focuses on analyzing the permeability and hydraulic conductivity of small soil aggregates from contrasting tillage systems (no-tillage – NT, minimum tillage – MT, conventional tillage – CT, and secondary forest – F) through synchrotron-based X-ray Computed Tomography. The 3D image segmentation was performed using machine and deep learning strategies. Permeability was measured based on the image-based parametrization of the Kozeny-Carman equation, which is dependent on porosity, hydraulic radius, and tortuosity. The porosity, hydraulic radius, and pore connectivity were not affected by the soil tillage systems at the scale of analysis (aggregates of a few millimeters). Conventional tillage had higher pore tortuosity relative to NT, demonstrating less favorable fluid transport at the aggregate scale. However, only the aggregates under F had significantly higher permeability and hydraulic conductivity relative to NT, MT, and CT. Our results brought new insights into the effects of different tillage systems on the soil structure and their possible impact on water dynamics at the microscale.

Macroscopic and microscopic investigation of the structural characteristics of artificially structured marine clay

Artificial structural soil is the best medium for simulating the structural characteristics of undisturbed soil, which is a unique property of undisturbed soil. To figure out the macroscopic and microscopic structural properties of artificially structured soil, this study proposed a method of disposing artificial structural soil to simulate in situ marine clay. In addition, a series of one-dimensional compression tests considering three influencing factors—the initial void ratio, interparticle cementation strength (determined by cement content) and pore size distribution (determined by initial salt content)—were conducted to explore the macroscopic structural properties of artificially structured marine clay. Then, SEM and MIP tests were performed to investigate the microstructure properties of artificially structured marine clay. With respect to the macro-scale experiment, the results show as the initial void ratio increases, the yield stress decreases while the compressibility increases in postyield stage. The pore size distribution mainly affects deformation, which increases with the quantity of relatively large pores. In terms of the micro-scale test, we found that the general microstructure is composed of aggregates of small clay platelets, some of which are either attached to the aggregates or linked to the surrounding aggregates with cemented bridges crossing the interaggregate pores. The most and least common pore space types feature entrance pore diameters of 1 ∼ 17 μm and larger than 17 μm, respectively. An increase in cement content causes increases in intra-aggregate pore space and interparticle cementation strength. Initial salt particle content exerts an influence predominantly in the pores with entrance diameters of 0.3 ∼ 1 μm and 1 ∼ 17 μm.

Phosphate Sorption onto Structured Soil

Soil–phosphorus interactions are frequently studied employing the slurry technique, in which soil samples are intensively mixed with phosphate solutions of various concentrations. The result of such experiments is a “phosphate sorption potential” because the thorough mixing of soil and phosphate solution as obtained by overhead or horizontal shaking of the slurry would probably not occur under natural conditions, especially if the soil is structured. Here, we wanted to test the impact of soil structure on phosphorus (P) removal from aqueous solution. Soil aggregates of a defined size class were prepared by carefully sieving the soil. The soil aggregates were individually wrapped in an inert fabric and placed on a sieve, which was lowered into a basin containing a phosphate solution of a given concentration. The decrease of the phosphate solution concentration with time was registered at fixed intervals, and adsorbed amounts were quantified by differences between initial concentrations and concentrations at the time of sampling. Pre-tests on fine earth revealed that sorption was more pronounced in the classical slurry batch experiment than in the approach used in this study. Differences between methods were more pronounced at lower initial phosphate concentrations. The increase in P sorption in the classical batch experiment continued over 24 h to 140 mg kg−1, while the adsorbed P amount remained constant (64 mg kg−1) after 6 h in the diffusion experiment. Interestingly, it was observed that the sorption onto soil aggregates was elevated as compared to unstructured fine earth. The sorption capacity of aggregates was approximately one third higher than that of the fine earth samples according to optimized Freundlich adsorption coefficients. This was unexpected since it was assumed that the soil surface area available for sorption processes is greater or at least far more accessible if the unstructured fine earth is exposed to the phosphate solution. We conclude that if the inner pore space of soil aggregates is readily accessible and diffusion is not hindered, the overall retention capacity of intact aggregates might be higher than that of the disturbed soil because the intra-aggregate pore space can accommodate a certain fraction of phosphate in addition to the adsorbed amount at particle surfaces. The presented experimental approach allows for studying sorption processes in well-structured and fine earth in conditions that perform better compared to the natural situation. Additional testing of the method for different soil types is advisable.

Role of plants in the spatial differentiation of 137Cs and 90Sr statuses on the aggregate level

The increased concentration of an element in plant biomass compared to the soil mass is an essential condition for the differentiated spatial distribution and status of the element on the aggregate level. Two forms of this differentiation have been revealed for 137Cs and 90Sr. Transfer of 137Cs from plant roots and concentration on the surface of soil aggregates have been established experimentally. Indirect data also point to the potential localization of 137Cs on the surface of intraaggregate pores. The effect of radionuclide concentrating on the outer and inner surfaces of aggregates is due to the rapid and strong fixation of cesium microamounts by mineral soil components. 137Cs from the surface of aggregates is more available for the repeated uptake by plant roots than from the intraped mass. The distortion of this spatial differentiation mainly occurs during the reaggregation of soil mass, which in turn decreases the availability of the radionuclide to plants. For 90Sr, its elevated concentration in the form of organic residues has been revealed in the inter- and intraaggregate pore space. However, due to the high diffusion rate, 90Sr is relatively rapidly (during several months under pot experimental conditions) redistributed throughout the entire volume of soil aggregates and its major part gradually passes into the phase of humic compounds, to which the radionuclide is bound by exchange sorption. The high level of the next root uptake (higher than for 137Cs by one to two orders of magnitude) favors the permanent renewal of loci with increased 90Sr concentrations in the inter- and intraaggregate pore space in the form of plant residues.

Origin of a zone of anomalously high porosity in the subduction inputs to Nankai Trough

Abstract One poorly understood feature of the subduction inputs to the Nankai Trough subduction zone (SW Japan) is a stratigraphic interval with an anomalously high porosity zone (HPZ), which is up to 240 m thick and located within the clay- and volcanic ash-rich Shikoku Basin facies. To investigate the origin of their peculiar physical properties, we integrated logging-while-drilling (LWD) data, shipboard density measurements, and visual descriptions of core samples recovered from four drill sites of the Ocean Drilling Program and Integrated Ocean Drilling Program. We combined those observations with scanning electron microscopy (SEM) and laboratory consolidation tests on both HPZ samples and artificial mixtures of ash (glass shards) + smectite and vesicular pumice + smectite. LWD data indicate that the HPZ mudstones have a large proportion of dispersed volcanic ash (~ 20–30%). The consolidation tests show that the rate of porosity loss with increasing effective stress (consolidation behavior) is consistent among HPZ specimens and matches artificial mixtures containing up to 60% volcanic material. However, absolute values of porosity remain higher for HPZ samples compared to artificial mixtures, so processes in addition to the mechanical effects of volcanic clasts must be contributing. We suggest that hydration and partial dissolution turns clusters of volcanic glass into aggregates with distinct microfabric. SEM images confirm the presence of strengthened grain-to-grain contacts, which probably inhibit the collapse of the intra-aggregate pore space. The aggregates behave like grains, so that cohesive strength of the bulk sediment and rate of porosity loss remain nearly unchanged during burial. The two-step diagenetic process of dissolution and precipitation depends critically on a threshold abundance of fine-grained dispersed volcanic ash/pumice. Older units in the Shikoku Basin with only traces of dispersed ash show no such effects. HPZs should be expected in other subduction zones with similar compositional and diagenetic prerequisites.

Soil aggregate geometry: Measurements and morphology

Aggregates provide physical microenvironments for microorganisms, the vital actors of soil systems, and thus play a major role as both, an arena and a product of soil carbon stabilization and dynamics. The surface of an aggregate is what enables exchange of the materials and air and water fluxes between aggregate exterior and interior regions. We made use of 3D images from X-ray CT of aggregates and mathematical morphology to provide an exhaustive quantitative description of soil aggregate morphology that includes both intra-aggregate pore space structure and aggregate surface features. First, the evolution of Minkowski functionals (i.e. volume, boundary surface, curvature and connectivity) for successive dilations of the solid part of aggregates was investigated to quantify its 3D geometrical features. Second, the inner pore space was considered as the object of interest. We devised procedures (a) to define the ends of the accessible pores that are connected to the aggregate surface and (b) to separate accessible and inaccessible porosity. Geometrical Minkowski functionals of the intra-aggregate pore space provide the exhaustive characterization of the inner structure of the aggregates. Aggregates collected from two different soil treatments were analyzed to explore the utility of these morphological tools in capturing the impact on their morphology of two different soil managements, i.e. conventional tillage management, and native succession vegetation treatment. The quantitative tools of mathematical morphology distinguished differences in patterns of aggregate structure associated to the different soil managements.

Long-term Differences in Tillage and Land Use Affect Intra-aggregate Pore Heterogeneity

Recent advances in computed tomography provide measurement tools to study internal structures of soil aggregates at micrometer resolutions and to improve our understanding of specific mechanisms of various soil processes. Fractal analysis is one of the data analysis tools that can be helpful in evaluating heterogeneity of the intra-aggregate internal structures. The goal of this study was to examine how long-term tillage and land use differences affect intra-aggregate pore heterogeneity. The specific objectives were: (i) to develop an approach to enhance utility of box-counting fractal dimension in characterizing intra-aggregate pore heterogeneity; (ii) to examine intra-aggregate pores in macro-aggregates (4–6 mm in size) using the computed tomography scanning and fractal analysis, and (iii) to compare heterogeneity of intra-aggregate pore space in aggregates from loamy Alfisol soil subjected to 20 yr of contrasting management practices, namely, conventional tillage (chisel plow) (CT), no-till (NT), and native succession vegetation (NS). Three-dimensional images of the intact aggregates were obtained with a resolution of 14.6 μm at the Advanced Photon Source, Argonne National Laboratory, Argonne, IL. Proposed box-counting fractal dimension normalization was successfully implemented to estimate heterogeneity of pore voxel distributions without bias associated with different porosities in soil aggregates. The aggregates from all three studied treatments had higher porosity associated with large (>100 μm) pores present in their centers than in their exteriors. Pores 15 to 60 μm were equally abundant throughout entire aggregates but their distributions were more heterogeneous in aggregate interiors. The CT aggregates had greater numbers of pores 15 to 60 μm than NT and NS. Distribution of pore voxels belonging to large pores was most heterogeneous in the aggregates from NS, followed by NT and by CT. This result was consistent with presence of very large pores associated with former root channels in NT and NS aggregates. Our findings indicate that mechanisms of macro-aggregate formation might differ in their importance in different land use and management practices.

Temperature and Hydrologic Controls on Dissolved Organic Matter Mobilization and Transport within a Forest Topsoil

Variations in concentrations of dissolved organic matter (DOM) in streams and rivers reflect, in part, coupled biogeochemical and hydrological processes that govern DOM mobilization and transport through soils. We explore the effects of temperature and rainfall characteristics on the quantity and composition of DOM mobilized from laboratory columns packed with an unsaturated forest soil. Our observations demonstrate that changes in temperature and a five-month drought period affect the mass and structure of DOM mobilized during soil-water infiltration, while changes in rainfall intensity and hourly to daily changes in the frequency of rainfall affect only the mass of DOM mobilized. The spectroscopic analyses indicate that DOM mobilized at low temperature is less humified and tends to be less condensed and lower in molecular weight. The C:N ratios of effluent DOM decline with cumulative rainfall volume during successive rainfall events and decrease by an average of 36% owing to the extended drought period. A two-region model that accounts for rate-limited DOM desorption from soil-water interfaces present within inter-aggregate and intra-aggregate pore spaces closely describes the time-series data on total concentrations of DOM eluted from the soil columns during the rainfall events.

Structure formation and its consequences for gas and water transport in unsaturated arable and forest soils

The aim of this paper is to clarify the effect of soil aggregation on physical and chemical properties of structured soils both on a bulk soil scale, for single aggregates, as well as for homogenized material. Aggregate formation and aggregate strength depend on swelling and shrinkage processes and on biological activity and kinds of organic exudates as well as on the intensity, number and time of swelling and drying events. Such aggregates are more dense than the bulk soil. The intra-aggregate pore distribution consists not only of finer pores, but these are also more tortuous. Therefore, water fluxes in aggregated soils are mostly multidimensional and the corresponding water fluxes in the intra-aggregate pore system are much smaller. Furthermore, ion transport both by mass flow and diffusion are delayed, whereby the length of the follow path in such tortuous finer pores further retards chemical exchange processes. The rearrangement of particles by aggregate formation also induces an increased apparent thermal diffusivity as compared with the homogenized material. The aggregate formation also affects the aeration and the gaseous composition in the intra-aggregate pore space. Depending on the kind and intensity of aggregation, the intra-aggregate pores can be completely anoxic, while the inter-aggregate pores are already completely aerated. The possibility to predict physical properties on these various scales depends on the rigidity of the pore system. In general, this rigidity depends on the above-mentioned physical and chemical processes both with respect to intensity and frequency. Thus, aggregates like subangular block or plates are the most rigid systems, while physical processes in the seedbed cannot be modelled using existing approaches due to the low strength and consequent instability of the pore system.

Gas diffusivity and production of CO2 in deep soils of the eastern Amazon

The rate of gaseous diffusion in soils affects the exchange of gases between the soil and the atmosphere, thereby affecting rates of soil respiration and other soil microbial processes. Understanding the causes of spatial and temporal variation in soil diffusivity will help explain controls of soil sources and sinks of atmospheric gases. In a study of sources of CO 2 in deep soils of forests and pastures of the eastern Amazon, we estimated gaseous diffusivity from bulk density and volumetric water content using published equations that assume the soil to be either an aggregated or nonaggregated medium. The aggregated model requires differentiation of interand intra-aggregate pore space; we estimated intra-aggregate pore space from volumetric water content at field capacity. Steady state 222 Rn profiles were predicted from a 1-D model using the diffusivities generated by both aggregated and nonaggregated models. Predicted values were compared with 222 Rn activities measured to 5 m depth. While the models predict similar radon activities below about 1 m, large differences are predicted for the top 1 m of soil. The nonaggregated model underestimated diffusivity and overestimated 222 Rn activities at 1 m and above, which is not surprising given that surface soils are usually well aggregated. Having validated the aggregated media model using the 222 Rn profiles, estimates of diffusivity were combined with measured profiles of CO 2 concentrations to estimate CO 2 production by depth. About 70-80% of the measured CO 2 flux from the soil surface was produced in the top 1 m of soil (including litter in the forest). The 20-30% produced below 1 m results from root respiration and microbial decay of root inputs at depth, indicating that deep soil processes are a non-trivial component of carbon cycling in these deep-rooting ecosystems. About 1% of the 20 kg C m -2 stock of soil C found between 1 m and 8 m depths turns over annually, indicating that land-use changes that affect rooting depth could significantly affect deep soil C stocks over decades to centuries. Fully understanding the role of land-use change on the global carbon cycle will require consideration of these deep soil processes. DOI: 10.1034/j.1600-0889.47.issue5.3.x

Differential Effects of Soil Water Content and Temperature on Nitrification and Aeration

AbstractEnvironmental concerns have stimulated increased interest in NO−3 accumulation in soils. The aeration status of the soil, which is mainly governed by the water content and temperature, is a central factor. The biological process responsible for NO−3 accumulation, nitrification, was measured to estimate the combined effects of water content and temperature and determine their joint effect on soil aeration. The effects of temperatures of 15, 20, 25, 30, and 35°C and water contents equivalent to 0.35, 0.42, 0.50, 0.52, 0.57, and 0.60 relative water content (volumetric water content/total porosity) on the nitrification activity of soil samples containing 2‐mm sieved soils taken at 0 to 20 or 20 to 40‐cm depth were determined by measuring NO−3 accumulation for 17 h. A descriptive model including three biological parameters, maximum nitrification rate (Nrmax), optimal relative water content (Θopt), and temperature, was developed. Maximum Nrmax occurred at 25.5°C in 0‐ to 20‐cm soil and at 20°C in 20‐ to 40‐cm soil, suggesting an adaptation of soil nitrifying populations to the temperature regime of the soil. The Nrmax value was negatively related to Θopt, and Θopt was dependent on temperature (T). This Θopt (T) relationship was parabolic in nature, with Θopt being at a minimum between 20 and 25°C. It could be simulated using O2 diffusion and respiration rates, inferring that these processes influenced Θopt and T correlation. The ranges of O2 concentrations favorable to maximum nitrification within an aggregate volume fraction were estimated for different temperatures. Nitrification was generally maximum when the intraaggregate pore spaces were saturated with water, with no water in the interaggregate pore space (i.e., 0.44 relative water content at 25°C and 0.36 at 20°C at 0‐ to 20‐ and 20‐ to 40‐cm depths).

Soil physical properties related to soil structure

The aim of this paper is to clarify the effect of soil aggregation on soil physical and chemical properties of structured soils both on a bulk soil scale, for single aggregates, as well as for homogenized material. Aggregate formation and aggregate strength depend on swelling and shrinkage processes and on biological activity and kinds of organic exudates as well as on the intensity, number and time of swelling and drying events. Such aggregates are, most of all, more dense than the aggregated bulk soil. The intra-aggregate pore distribution consists not only of finer pores but these are also more tortuous. Thus, water fluxes in aggregated soils are mostly multidimensional and the corresponding water fluxes in the intra-aggregate pore system are much smaller. Furthermore, ion transport by mass flow as well as by diffusion are delayed, whereby the length of the flow path in such tortuous finer pores further retards chemical exchange processes. The chemical composition of the percolating soil solution differs even more from that of the corresponding homogenized material the stronger and denser the aggregates are. The rearrangement of particles by aggregate formation also induces an increased apparent thermal diffusivity as compared with the homogenized material. The aggregate formation also affects the aeration and the gaseous composition of the intra-aggregate pore space. Depending on the kind and intensity of aggregation, the intra-aggregate pores can be completely anoxic, while the inter-aggregate pores are already completely aerated. The higher the amount of dissolved organic carbon in the percolating soil solution, the more pronounced is the difference between the gaseous composition in the inter- and in the intra-aggregate pore system. From the mechanical point of view, the strength single aggregates, determined as the angle of internal friction and cohesion, depends on the number of contact points or the forces, which can be transmitted at each single contact point. The more structured soils are, the higher the proportion of the effective stress on the total stress is, but even in single aggregates positive pore water pressure values can be revealed. Dynamic forces e.g. due to wheeling and/or slip processes can affect the pore system as well as the composition of the soil by: (1) a rearrangement of single aggregates in the existing inter-aggregate pore system resulting in an increased bulk density and a less aerated and less rootable soil volume, (2) a complete homogenization, i.e. aggregate deterioration due to shearing. Thus, the smaller texture dependent soil strength coincides with a more intensive soil compaction due to loading. (3) Aggregate deterioration due to shearing results in a complete homogenization, if excess soil water is available owing to kneading as soon as the octahedral shear stresses and the mean normal stresses exceed the stress state defined by the Mohr-Coulomb failure line. Consequently, normal shrinkage processes start again. Thus, the rearrangement of particles and the formation of well defined single aggregates even at the same bulk density of the bulk soil both affect, to a great extent, various ecological parameters. Environmental aspects can also be correlated, or at least explained with the processes in soils, as a major compartment of terrestial ecosystems, if the physical and chemical properties of the structure elements and their composition in the bulk soil are understood.

Modelling diffusion and microbial uptake of 13C-glucose in soil aggregates

A deterministic model was developed to simulate the microbial utilization and diffusion of finite amounts of substrate from the surface of a model aggregate into the intra-aggregate pore spaces. Experiments were performed for comparison with the simulation results and to estimate the effective intra-aggregate diffusion coefficient for glucose. Glucose was applied to the surfaces of sterilized and nonsterilized aggregates and the induced 13CO 2-respiration and radial glucose distribution were measured. ATP measurements show a developing radial gradient of microbial activity decreasing from the outer to the inner part of the aggregate.

Change in pore size distribution due to consolidation of clays: technical note : Griffths, F J; Joshi, R C GeotechniqueV39, N1, March 1989, P159–167

The preliminary results are presented of an investigation of the microstructural changes due to consolidation of 4 clays, each stressed to 4 levels in one-dimensional consolidation, freeze-dried and analyzed using mercury intrusion porosimetry (MIP). Details are given of the samples and experimental procedures. The consolidation curves for the 4 soils are presented and discussed. MIP is noted as a powerful technique in the analysis of microstructural behavior, and a particularly useful method of analysis is that of normalizing the pore size distribution to a base run for the same soil. The volume decrease due to consolidation of the clays is due to changes in the volume of the large existing pores. Intra-aggregate pore space as measured by the free porosity from second intrusions of the clay samples does not change with increasing consolidation stress. A mathematical relation between total intrusion and consolidation stress has been derived and found to agree with results presented elsewhere. A relationship between inter-aggregate or entrapped porosity and consoldiation stress has also been found. A deformable aggregate model of consolidation behavior is indicated by the observed pore size distribution changes and the lack of evidence of cluster formation.