Intermediate Processing Stages Research Articles

Event-related potentials dissociate perceptual from response-related age effects in visual search

Attentional decline plays a major role in cognitive changes with aging. However, which specific aspects of attention contribute to this decline is as yet little understood. To identify the contributions of various potential sources of age decrements in visual search, we combined response time measures with lateralized event-related potentials of younger and older adults performing a compound-search task, in which the target-defining dimension of a pop-out target (color/shape) and the response-critical target feature (vertical/horizontal stripes) varied independently across trials. Slower responses in older participants were associated with age differences in all analyzed event-related potentials from perception to response, indicating that behavioral slowing originates from multiple stages within the information-processing stream. Furthermore, analyses of carry-over effects from one trial to the next revealed repetition facilitation of the target-defining dimension and of the motor response—originating from preattentive perceptual and motor execution stages, respectively—to be independent of age. Critically, we demonstrated specific age deficits on intermediate processing stages when intertrial changes required more executively controlled processes, such as flexible stimulus-response (re-)mapping across trials.

The roles of endstopped and curvature tuned computations in a hierarchical representation of 2D shape.

That shape is important for perception has been known for almost a thousand years (thanks to Alhazen in 1083) and has been a subject of study ever since by scientists and phylosophers (such as Descartes, Helmholtz or the Gestalt psychologists). Shapes are important object descriptors. If there was any remote doubt regarding the importance of shape, recent experiments have shown that intermediate areas of primate visual cortex such as V2, V4 and TEO are involved in analyzing shape features such as corners and curvatures. The primate brain appears to perform a wide variety of complex tasks by means of simple operations. These operations are applied across several layers of neurons, representing increasingly complex, abstract intermediate processing stages. Recently, new models have attempted to emulate the human visual system. However, the role of intermediate representations in the visual cortex and their importance have not been adequately studied in computational modeling.This paper proposes a model of shape-selective neurons whose shape-selectivity is achieved through intermediate layers of visual representation not previously fully explored. We hypothesize that hypercomplex - also known as endstopped - neurons play a critical role to achieve shape selectivity and show how shape-selective neurons may be modeled by integrating endstopping and curvature computations. This model - a representational and computational system for the detection of 2-dimensional object silhouettes that we term 2DSIL - provides a highly accurate fit with neural data and replicates responses from neurons in area V4 with an average of 83% accuracy. We successfully test a biologically plausible hypothesis on how to connect early representations based on Gabor or Difference of Gaussian filters and later representations closer to object categories without the need of a learning phase as in most recent models.

Optical switching and related structural properties of epitaxial Ge2Sb2Te5 films

We investigate the optical switching process and the related structural properties of (GeTe)(Sb2Te3) epitaxial films close to Ge2Sb2Te5 composition on GaSb(001). While the amorphization process can take place in a single or in multiple steps, the re-crystallization process always takes place in multiple steps. Intermediate stages of the re-crystallization process are characterized by small crystalline islands within the amorphous area. The structural properties are investigated by optical microscopy and electron backscatter diffraction (EBSD) in a scanning electron microscope. The analysis of the EBSD pattern demonstrates that the crystalline islands at intermediate stages of the re-crystallization process exhibit different orientations. We conclude that the re-crystallization process is driven by nucleation without any orientation information from the substrate.

Erratum to: Response trajectories reveal conflict phase in image—word mismatch

In the present study, response trajectories were used in a picture–word conflict task to determine the timing of intermediate processing stages that are relatively inaccessible to response time measures. A marker was placed above or below the word ABOVE or BELOW so that its location was congruent or in conflict with the word’s meaning. To report either word location (above or below the marker) or word meaning, participants moved a mouse upward toward the appropriate top left or right answer corner on the display screen. Their response trajectories showed a number of distinctive features: First, at about 200 ms after stimulus onset (the “decision moment”), the trajectory abruptly began to arc toward the appropriate answer corner; second, when the word's meaning and position were in conflict, the trajectory showed an interruption that continued until the conflict was resolved. By varying the SOA of the word and marker onsets, we found that the word meaning and word position became available at approximately 325 ms and 251 ms, respectively, after their onsets, and that the delay to resolve conflicts was about 138 ms. The timing of these response trajectory events was more stable than any extracted from the final response times, demonstrating the power of response trajectories to reveal processing stages that are only poorly resolved, if at all, by response time measures. The online version of the original article can be found at http://dx.doi.org/ 10.3758/s13414-011-0261-0. Electronic supplementary material The online version of this article (doi:10.3758/s13414-012-0300-5) contains supplementary material, which is available to authorized users. F. T. van Vugt : P. Cavanagh Laboratoire Psychologie de la Perception, CNRS UMR 8158, Universite Paris Descartes, Sorbonne Paris Cite Paris, France F. T. van Vugt (*) IMMM HMTMH, Emmichplatz 1, Hannover, Germany e-mail: f.t.vanvugt@gmail.com Atten Percept Psychophys (2012) 74:1075 DOI 10.3758/s13414-012-0300-5

Response trajectories reveal conflict phase in image–word mismatch

In the present study, response trajectories were used in a picture–word conflict task to determine the timing of intermediate processing stages that are relatively inaccessible to response time measures. A marker was placed above or below the word ABOVE or BELOW so that its location was congruent or in conflict with the word's meaning. To report either word location(above or below the marker) or word meaning, participants moved a mouse upward toward the appropriate top left or right answer corner on the display screen.Their response trajectories showed a number of distinctive features: First, at about 200 ms after stimulus onset(the "decision moment"), the trajectory abruptly began to arc toward the appropriate answer corner; second,when the word's meaning and position were in conflict,the trajectory showed an interruption that continued until the conflict was resolved. By varying the SOA of the word and marker onsets, we found that the word meaning and word position became available at approximately 325 ms and 251 ms, respectively, after their onsets, and that the delay to resolve conflicts was about 138 ms. The timing of these response trajectory events was more stable than any extracted from the final response times, demonstrating the power of response trajectories to reveal processing stages that are only poorly resolved, if at all, by response time measures [added].

Auditory object salience: human cortical processing of non-biological action sounds and their acoustic signal attributes

Whether viewed or heard, an object in action can be segmented as a distinct salient event based on a number of different sensory cues. In the visual system, several low-level attributes of an image are processed along parallel hierarchies, involving intermediate stages wherein gross-level object form and/or motion features are extracted prior to stages that show greater specificity for different object categories (e.g., people, buildings, or tools). In the auditory system, though relying on a rather different set of low-level signal attributes, meaningful real-world acoustic events and “auditory objects” can also be readily distinguished from background scenes. However, the nature of the acoustic signal attributes or gross-level perceptual features that may be explicitly processed along intermediate cortical processing stages remain poorly understood. Examining mechanical and environmental action sounds, representing two distinct non-biological categories of action sources, we had participants assess the degree to which each sound was perceived as object-like versus scene-like. We re-analyzed data from two of our earlier functional magnetic resonance imaging (fMRI) task paradigms (Engel et al., 2009) and found that scene-like action sounds preferentially led to activation along several midline cortical structures, but with strong dependence on listening task demands. In contrast, bilateral foci along the superior temporal gyri (STG) showed parametrically increasing activation to action sounds rated as more “object-like,” independent of sound category or task demands. Moreover, these STG regions also showed parametric sensitivity to spectral structure variations (SSVs) of the action sounds—a quantitative measure of change in entropy of the acoustic signals over time—and the right STG additionally showed parametric sensitivity to measures of mean entropy and harmonic content of the environmental sounds. Analogous to the visual system, intermediate stages of the auditory system appear to process or extract a number of quantifiable low-order signal attributes that are characteristic of action events perceived as being object-like, representing stages that may begin to dissociate different perceptual dimensions and categories of every-day, real-world action sounds.

Single-trial event-related potentials and autonomic measures of the orienting reflex

We aimed to clarify the event-related potentials (ERPs) associated with elicitation and habituation of the basic Orienting Reflex (OR). Participants were presented with 16 innocuous tones, alternating in intensity, at long variable inter-stimulus intervals, with no task. This allowed us to examine stimulus novelty and intensity effects in the absence of stimulus-related task demands. Single-trial ERPs were extracted to obtain estimates of the early N1 and the late positive complex (LPC) to each stimulus. Electrodermal responses showed substantial main effects of trials and intensity, supporting their functionality as an OR index. Cardiac deceleration showed no systematic change with intensity or trials, suggesting that it marks the transient onset of each stimulus, early in the stimulus-processing sequence. Respiratory pause showed a substantial main effect of trials but no intensity effect, suggesting that it reflects an intermediate processing stage. A main effect of intensity, but no simple trial effect, was apparent in the N1, suggesting that it reflects a different intermediate processing stage. The subsequent LPC showed only a topographic interaction with trials and intensity, failing to support any substantive role in OR processing. These different stimulus–response profiles are discussed in the context of a sequential processing model of the OR.

The effects of aging on low and intermediate stages of form processing

The effects of aging on low and intermediate stages of form processing

Transitional states of acrosomal exocytosis and proteolytic processing of the acrosomal matrix in guinea pig sperm

In this study, we adapted a FluoSphere bead-binding assay to study the exposure and release of guinea pig sperm acrosomal components during the course of capacitation and acrosomal exocytosis. Prior to capacitation or the initiation of exocytosis, acrosomal proteins were not accessible to FluoSpheres coated with antibodies against two acrosomal matrix (AM) proteins, AM67 and AM50; during the course of capacitation and ionophore-induced acrosomal exocytosis, however, we detected the transient exposure of the solid-phase AM proteins on the surface of guinea pig sperm using the antibody-coated fluorescent beads. Several different transitional stages leading to complete acrosomal exocytosis were classified, and we propose these represent true, functional intermediates since some of the AM proteins are orthologues of mouse proteins that bind the zona pellucida (ZP) of unfertilized eggs. In addition, we present evidence that implicates acrosin in the proteolytic processing of AM50 during AM disassembly. Thus, we propose that the transitional states of acrosomal exocytosis involve early binding of AM proteins to the ZP (by what visually appear to be "acrosome-intact" sperm), maintenance of ZP binding that coincides with the progressive exposure of AM proteins, and gradual proteolytic disassembly of the AM to allow sperm movement through the ZP. We feel this "transitional states" model provides a more refined view of acrosomal function that supports a move away from the widely held, overly simplistic, and binary "acrosome-reaction" model, and embraces a more dynamic view of acrosomal exocytosis that involves intermediate stages of the secretory process in ZP binding and penetration.

Global shape processing involves a hierarchy of integration stages

Radial Frequency (RF) patterns can be used to study the processing of familiar shapes, e.g. triangles and squares. Opinion is divided over whether the mechanisms that detect these shapes integrate local orientation and position information directly, or whether local orientations and positions are first combined to represent extended features, such as curves, and that it is local curvatures that the shape mechanism integrates. The latter view incorporates an intermediate processing stage, the former does not. To differentiate between these hypotheses we studied the processing of micro-patch sampled RF patterns as a function of the luminance polarity of successive elements on the contour path. Our first study measures shape after effects involving suprathreshold amplitude RF shapes and shows that alternating the luminance polarity of successive micro-patch elements disrupts adaptation of the global shape. Our second study shows that polarity alternations also disrupt sensitivity to threshold-amplitude RF patterns. These results suggest that neighbouring points of the contour shape are integrated into extended features by a polarity selective mechanism, prior to global shape processing, consistent with the view that for both threshold amplitude and suprathreshold amplitude patterns, global processing of RF shapes involves an intermediate stage of processing.

Long aging time thermal degradation of the ac conductivity and complex permittivity of conducting polypyrrole

The modification of the ac conductivity and the complex permittivity of conducting polypyrrole was monitored throughout a two years thermal aging at 343 K. Reduction of the cross-over frequency is correlated with the degradation of dc-conductivity, while the ac conductivity region corresponding to the so-called ‘universal’ dielectric relaxation remains practically insensitive during the first year of ageing, which implies a collective co-operativity among multiple degradation processes that yield a practically time-independent effective disordered environment. A broad dielectric loss peak recorded in fresh specimens splits into two distinct relaxations for intermediate stages of the annealing process. The aging-time evolution of the dc component and the relaxations are qualitatively analysed and time constants are determined.

Chemical Mechanical Polishing of Gallium Nitride with Colloidal Silica

In this report, chemical mechanical polishing (CMP) of gallium nitride (GaN) with colloidal silica was studied. It was confirmed that colloidal silica based slurry could be used for gallium face of GaN. Removal rate of GaN was 17 nm/h under typical polishing conditions. An atomically flat surface with Ra = 0.1 nm was achieved after CMP. Detailed observation of the scratch density was done during the CMP process. Cathode luminescence (CL) imaging was used to understand the sub-surface damage induced by mechanical polishing process and its removal by CMP with colloidal silica based slurry. Combining the optical microscope, atomic force microscope (AFM), CL imaging, and reflection high energy electron diffraction (RHEED) observations before, after and at intermediate stages of the CMP process, the schematic model of the removal of scratch and damage layer from Ga-faced GaN substrate by CMP process was proposed.

Remodeling of the notochord during development of vertebral fusions in Atlantic salmon (Salmo salar)

Histological characterization of spinal fusions in Atlantic salmon (Salmo salar) has demonstrated shape alterations of vertebral body endplates, a reduced intervertebral space, and replacement of intervertebral cells by ectopic bone. However, the significance of the notochord during the fusion process has not been addressed. We have therefore investigated structural and cellular events in the notochord during the development of vertebral fusions. In order to induce vertebral fusions, Atlantic salmon were exposed to elevated temperatures from fertilization until they attained a size of 15g. Based on results from radiography, intermediate and terminal stages of the fusion process were investigated by immunohistochemistry and real-time quantitative polymerase chain reaction. Examination of structural extracellular matrix proteins such as Perlecan, Aggrecan, Elastin, and Laminin revealed reduced activity and reorganization at early stages in the pathology. Staining for elastic fibers visualized a thinner elastic membrane surrounding the notochord of developing fusions, and immunohistochemistry for Perlecan showed that the notochordal sheath was stretched during fusion. These findings in the outer notochord correlated with the loss of Aggrecan- and Substance-P-positive signals and the further loss of vacuoles from the chordocytes in the central notochord. At more progressed stages of fusion, chordocytes condensed, and the expression of Aggrecan and Substance P reappeared. The hyperdense regions seem to be of importance for the formation of notochordal tissue into bone. Thus, the remodeling of notochord integrity by reduced elasticity, structural alterations, and cellular changes is probably involved in the development of vertebral fusions.

Evidence for a workspace model of working memory from semantic implicit processing in neglect

Three experiments tested the hypothesis that activation of semantic memory from perceptual input does not require initial retention of the perceptual material in working memory as assumed by a widely held view of information processing. In Expt 1, two brain-damaged patients with left-sided unilateral spatial neglect were tested. They were asked to listen to and read a series of familiar (British) and unfamiliar (foreign) proverbs and to choose which proverb was the best match to a depicted figure shown with the target object(s) on the left (neglected side) of the patients' visual field. Expt 2 simulated the testing conditions for the neglect patients with healthy participants using subliminal presentation of one half of each picture. Using different materials, Expt 3 replicated the outcomes of Expts 1 and 2 with a third neglect patient and a new group of controls. In all three experiments, participants appeared to be unaware of target features; however they selected familiar, but not unfamiliar, target proverbs above chance. The results showing implicit processing of semantic material can be explained by a model in which working memory is a separate system that deals with activated contents of semantic memory, and in which there is direct activation of semantic memory from perception without intermediate stages of processing in working memory.

Downhill binding energy surface of the barnase–barstar complex

We have employed biased molecular dynamics simulations in explicit solvent to characterize the one-dimensional potential of mean force for the dissociation process of the barnase-barstar protein-protein complex. Unbinding of barstar from wild-type barnase was compared with dissociation from four charge-deletion mutants of barnase. Interestingly, we find in all cases that unbinding of barnase and barstar is an uphill process on a smooth, tilted energy landscape. The total free energy difference between the dissociated and bound state was similar for wild-type barnase-barstar and for the R87A mutant of barnase. The values for the three other mutant barnase mutants K27A, R59A, and R83Q were only about half as much. Besides, we have analyzed the conformational dynamics of important residues at the barnase-barstar interface. In the bound state, their conformational fluctuations are reduced relatively to the free state because of the formation of intermolecular contacts. Interestingly, we find that some residues also show decreased mobility at intermediate stages of the unbinding process suggesting that these residues may be involved in the first contacts being formed on binding. © 2010 Wiley Periodicals, Inc. Biopolymers 93: 977-985, 2010.

Butyrate Greatly Enhances Derivation of Human Induced Pluripotent Stem Cells by Promoting Epigenetic Remodeling and the Expression of Pluripotency-Associated Genes

We report here that butyrate, a naturally occurring fatty acid commonly used as a nutritional supplement and differentiation agent, greatly enhances the efficiency of induced pluripotent stem (iPS) cell derivation from human adult or fetal fibroblasts. After transient butyrate treatment, the iPS cell derivation efficiency is enhanced by 15- to 51-fold using either retroviral or piggyBac transposon vectors expressing 4 to 5 reprogramming genes. Butyrate stimulation is more remarkable (>100- to 200-fold) on reprogramming in the absence of either KLF4 or MYC transgene. Butyrate treatment did not negatively affect properties of iPS cell lines established by either 3 or 4 retroviral vectors or a single piggyBac DNA transposon vector. These characterized iPS cell lines, including those derived from an adult patient with sickle cell disease by either the piggyBac or retroviral vectors, show normal karyotypes and pluripotency. To gain insights into the underlying mechanisms of butyrate stimulation, we conducted genome-wide gene expression and promoter DNA methylation microarrays and other epigenetic analyses on established iPS cells and cells from intermediate stages of the reprogramming process. By days 6 to 12 during reprogramming, butyrate treatment enhanced histone H3 acetylation, promoter DNA demethylation, and the expression of endogenous pluripotency-associated genes, including DPPA2, whose overexpression partially substitutes for butyrate stimulation. Thus, butyrate as a cell permeable small molecule provides a simple tool to further investigate molecular mechanisms of cellular reprogramming. Moreover, butyrate stimulation provides an efficient method for reprogramming various human adult somatic cells, including cells from patients that are more refractory to reprogramming.

Audiovisual Functional Magnetic Resonance Imaging Adaptation Reveals Multisensory Integration Effects in Object-Related Sensory Cortices

Information integration across different sensory modalities contributes to object recognition, the generation of associations and long-term memory representations. Here, we used functional magnetic resonance imaging adaptation to investigate the presence of sensory integrative effects at cortical levels as early as nonprimary auditory and extrastriate visual cortices, which are implicated in intermediate stages of object processing. Stimulation consisted of an adapting audiovisual stimulus S(1) and a subsequent stimulus S(2) from the same basic-level category (e.g., cat). The stimuli were carefully balanced with respect to stimulus complexity and semantic congruency and presented in four experimental conditions: (1) the same image and vocalization for S(1) and S(2), (2) the same image and a different vocalization, (3) different images and the same vocalization, or (4) different images and vocalizations. This two-by-two factorial design allowed us to assess the contributions of auditory and visual stimulus repetitions and changes in a statistically orthogonal manner. Responses in visual regions of right fusiform gyrus and right lateral occipital cortex were reduced for repeated visual stimuli (repetition suppression). Surprisingly, left lateral occipital cortex showed stronger responses to repeated auditory stimuli (repetition enhancement). Similarly, auditory regions of interest of the right middle superior temporal gyrus and sulcus exhibited repetition suppression to auditory repetitions and repetition enhancement to visual repetitions. Our findings of crossmodal repetition-related effects in cortices of the respective other sensory modality add to the emerging view that in human subjects sensory integrative mechanisms operate on earlier cortical processing levels than previously assumed.

The Future of the WTO: The Case for Institutional Reform

Institutional reform of the World Trade Organization (WTO) is needed to equip it for the challenges of the future. However, the major problem with rule making and decision making in the WTO is not the consensus rule or the decision-making rules in the Marrakesh Agreement Establishing the WTO. It is not the final phase of adoption of a rule-making proposal that causes the delays and blockage in the WTO system, but rather the lack of formal mechanisms at the initial and intermediate stages of the rule-making process and the absence of a management or executive body, analogous to the executive boards of the International Monetary Fund and World Bank, that leads to the lack of direction and drift in the Organization. This article maintains that it is necessary to establish a formal, limited-membership management committee or executive board within the WTO. The roles of the Director-General and the Secretariat of the WTO should also be enhanced. The WTO has been criticized for its lack of transparency and accountability vis-a-vis NGOs and civil society. Developing a parliamentary dimension to the WTO would go a long way to remedying these deficiencies. Finally, the idea of developing more formal mechanisms for receiving input from non-state stakeholders, with an emphasis on business and consumer groups, should be explored. Oxford University Press 2009, all rights reserved, Oxford University Press.

Perception of contours and shapes: Low and intermediate stage mechanisms

This review focuses on low and intermediate stages of contour shape processing. It is split into two main sections, ‘Contour Detection’ and ‘Shape Discrimination and Representation’. The first section examines contrast detection of elements within a contour (“collinear facilitation”) and the detection of contours in noise (“contour integration”). The second section deals with the discrimination and representation of simple and complex shapes. Perceptual effects on contour detection have been linked to low-level, long-range lateral interactions between neighbouring neurons in V1. Experimental results suggest a complex network of interactions that are context dependent, with collinearity being the dominant factor. While lateral connections are an obvious candidate for linking contour elements into spatially extended contours, the long-range interactions are insufficient to account for human performance in a variety of tasks. Data suggest the existence of global mechanisms that integrate information beyond that of neighbouring cells and are influenced by the overall features of a stimulus. Evidence from psychophysics and physiology is converging towards the identification of an intermediate level of shape processing, where sensitivity to such global attributes emerge.

Probing category selectivity for environmental sounds in the human auditory brain

Earlier studies reported evidence suggesting distinct category-related auditory representations for environmental sounds such as animal vocalizations and tool sounds in superior and middle temporal regions of the temporal lobe. However, the degree of selectivity of these representations remains to be determined. The present study combined functional magnetic resonance imaging (fMRI) adaptation with a silent acquisition protocol to further investigate category-related auditory processing of environmental sounds. To this end, we consecutively presented pairs of sounds taken from the categories ‘tool sounds’ or ‘animal vocalizations’ with either the same or different identity/category. We examined the degree of selectivity as evidenced by adaptation effects to both or only one sound category in the course of whole-brain as well as functionally and anatomically constrained region of interest analyses. While most regions predominately in the temporal cortex showed an adaptation to both sound categories, particularly the left superior temporal gyrus (STG) and the left posterior middle temporal gyrus (pMTG) selectively adapted to animal vocalizations and tool sounds, respectively. However, the activation profiles of these regions differed with respect to the general responsiveness to sounds. While tool sounds still produced fMRI signals significantly different from fixation baseline in the STG, this was not the case for animal vocalizations in pMTG. Consistent with the interpretation of STG as an intermediate auditory processing stage, this region might differentiate auditory stimuli into categories based on variations of physical stimulus properties. However, processing in left pMTG seems to be even more restricted to action-related sounds of man-made objects.