Present study investigates the response of the two distinct geotechnical problems under earthquake loading. These two problems are: 1) nailed soil slope and 2) 1-D site response analysis. The aim of the study is to understand the cause of spurious accelerations and suggest a remedy. Two distinct interface conditions were considered in modelling the nailed soil slope. In first, the soil nail interface was considered to be perfectly bonded. In second case, the sliding at the interface was allowed. The analysis resulted into the physically acceptable deformations. However, the dumbbell shaped spurious acceleration pattern was observed in perfect bonding case. Further, the maximum acceleration was found to span from 4 g to 13 g. Such extremely high accelerations are unphysical and hence, unacceptable. In case of 1-D site response analysis, misleading acceleration spike of magnitude twice that of true acceleration was noted. The introduction of the numerical damping successfully removed the spurious accelerations and resulted in physically acceptable response for both problems.