Groundwater (GW) flooding mechanisms differ from river flooding, both spatially and temporally, and preventative methods against groundwater flooding must take this into account. Although groundwater flooding caused by a rise of river water seldom occurs, it can occasionally become severe and last for a long time if the river is significantly flooded. In the southwest portion of the research domain, Friedrichshafen, Germany, with a few urban communities, the level of the groundwater table was discovered to be roughly 1 m below the surface. In the study region, it is typical for the bottom level of the foundation of a single-story building to extend up to a depth of about 1.5 m. Therefore, flood mitigation methods are taken into account for the southwest portion of the study region. In this study, FEFLOW is used to explore the preventative methods for groundwater flooding caused by river water increase in urban settings, the spread of contamination, and the strategizing of effective mitigation solutions for flooding. The installation of a pumping well, drainage, and a barrier in the affected area are three different flood control strategies that are taken into consideration for the study area. Pumping well installation, reducing up to 1.5 m of hydraulic head, was found to be the most effective flood control measure locally in a small region. By contrast, removing groundwater by building drainage and barriers was shown to be ineffective for lowering the groundwater table over an extended region, and was significantly more expensive than the installation of wells. Additionally, when river flooding is taken into account, compared to the default scenario where no intake of water from the river is included along the western border of the study area, it was discovered that the spread of pollution (nitrate concentration) is significantly greater.