Infrared Action Spectroscopy Research Articles

Infrared Spectroscopy of Size-Selected Hydrated Carbon Dioxide Radical Anions CO2 .- (H2 O)n (n=2-61) in the C-O Stretch Region.

Understanding the intrinsic properties of the hydrated carbon dioxide radical anions CO2 .−(H2O)n is relevant for electrochemical carbon dioxide functionalization. CO2 .−(H2O)n (n=2–61) is investigated by using infrared action spectroscopy in the 1150–2220 cm−1 region in an ICR (ion cyclotron resonance) cell cooled to T=80 K. The spectra show an absorption band around 1280 cm−1, which is assigned to the symmetric C−O stretching vibration ν s. It blueshifts with increasing cluster size, reaching the bulk value, within the experimental linewidth, for n=20. The antisymmetric C−O vibration ν as is strongly coupled with the water bending mode ν 2, causing a broad feature at approximately 1650 cm−1. For larger clusters, an additional broad and weak band appears above 1900 cm−1 similar to bulk water, which is assigned to a combination band of water bending and libration modes. Quantum chemical calculations provide insight into the interaction of CO2 .− with the hydrogen‐bonding network.

Structures of Cu n+ ( n = 3-10) Clusters Obtained by Infrared Action Spectroscopy.

Coinage metal clusters are of great importance for a wide range of scientific fields, ranging from microscopy to catalysis. Despite their clear fundamental and technological importance, the experimental structural determination of copper clusters has attracted little attention. We fill this gap by elucidating the structure of cationic copper clusters through infrared (IR) photodissociation spectroscopy of Cun+–Arm complexes. Structures of Cun+ (n = 3–10) are unambiguously assigned based on the comparison of experimental IR spectra in the 70–280 cm–1 spectral range with spectra calculated using density functional theory. Whereas Cu3+ and Cu4+ are planar, starting from n = 5, Cun+ clusters adopt 3D structures. Each successive cluster size is composed of its predecessor with a single atom adsorbed onto the face, giving evidence of a stepwise growth.

A Cl- Hinge for Cyclen Macrocycles: Ionic Interactions and Tweezer-Like Complexes.

The supramolecular networks derived from the complexation of polyazamacrocycles with halide anions constitute fundamental building blocks of a broad range of modern materials. This study provides insights into the conformational framework that supports the binding of protonated cyclen macrocyles (1,4,7,10-Tetraazacyclododecane) by chloride anions through NHδ+···Cl− interactions. The isolated complex comprised of two cyclen hosts linked by one Cl− anion is characterized by means of infrared action spectroscopy and ion mobility mass spectrometry, in combination with quantum chemical computations. The Cl− anion is found to act as a hinge that bridges the protonated moieties of the two macrocycles leading to a molecular tweezer configuration. Different types of conformations emerge, depending on whether the trimer adopts an open arrangement, with significant freedom for internal rotation of the cyclen moieties, or it locks in a folded conformation with intermolecular H-bonds between the two cyclen backbones. The ion mobility collision cross section supports that folded configurations of the complex are dominant under isolated conditions in the gas phase. The IRMPD spectroscopy experiments suggest that two qualitatively different families of folded conformations coexist at room temperature, featuring either peripheral or inner positions of the anion with respect to the macrocycle cavities, These findings should have implications in the growth of extended networks in the nanoscale and in sensing applications.

Characterization of a trans–trans Carbonic Acid–Fluoride Complex by Infrared Action Spectroscopy in Helium Nanodroplets

The high Lewis basicity and small ionic radius of fluoride promote the formation of strong ionic hydrogen bonds in the complexation of fluoride with protic molecules. Herein, we report that carbonic acid, a thermodynamically disfavored species that is challenging to investigate experimentally, forms a complex with fluoride in the gas phase. Intriguingly, this complex is highly stable and is observed in abundance upon nanoelectrospray ionization of an aqueous sodium fluoride solution in the presence of gas-phase carbon dioxide. We characterize the structure and properties of the carbonic acid–fluoride complex, F–(H2CO3), and its deuterated isotopologue, F–(D2CO3), by helium nanodroplet infrared action spectroscopy in the photon energy range of 390–2800 cm–1. The complex adopts a C2v symmetry structure with the carbonic acid in a planar trans–trans conformation and both OH groups forming ionic hydrogen bonds with the fluoride. Substantial vibrational anharmonic effects are observed in the infrared spectra, most notably a strong blue shift of the symmetric hydrogen stretching fundamental relative to predictions from the harmonic approximation or vibrational second-order perturbation theory. Ab initio thermostated ring-polymer molecular dynamics simulations indicate that this blue shift originates from strong coupling between the hydrogen stretching and bending vibrations, resulting in an effective weakening of the OH···F– ionic hydrogen bonds.

Identification of Active Sites and Structural Characterization of Reactive Ionic Intermediates by Cryogenic Ion Trap Vibrational Spectroscopy.

Cryogenic ion trap vibrational spectroscopy paired with quantum chemistry currently represents the most generally applicable approach for the structural investigation of gaseous cluster ions that are not amenable to direct absorption spectroscopy. Here, we give an overview of the most popular variants of infrared action spectroscopy and describe the advantages of using cryogenic ion traps in combination with messenger tagging and vibrational predissociation spectroscopy. We then highlight a few recent studies that apply this technique to identify highly reactive ionic intermediates and to characterize their reactive sites. We conclude by commenting on future challenges and potential developments in the field.

Preferential host-guest coordination of nonactin with ammonium and hydroxylammonium.

The biological activity of the macrocycle nonactin is intimately related to its ionophore properties and ability to act as a selective cation carrier. The competitive binding of small protonated amines constitutes a particularly key issue in the biochemistry of nonactin, which finds application in sensing and extraction technologies. In this study, isolated complexes of nonactin with ammonium and hydroxylammonium are investigated with infrared action spectroscopy and quantum chemical computations. The focus of the investigation is on the coordination achieved by the protonated guest with the oxygen atoms of either the oxolane groups or the carboxyl groups in the ester linkages of the macrocyle host and their relative contributions to the stability of the complexes. The experimental and computational data converge to a preferred coordination arrangement associated with a tight binding of the N-H δ+ bonds with the oxolane groups. In the complex, this results in a compact complex of S 4 symmetry. In contrast, symmetry is disrupted in the NH3OH+ complex, as it incorporates a bifurcated coordination of the -OH bond with a carbonyl group and an oxolane group of the host, involving also a more stretched arrangement of the nonactin backbone. These gas-phase conformations are in agreement with the structures postulated for these complexes in condensed phases, from previous Raman and crystallographic experiments.

Structural Characterization of Molybdenum Oxide Nanoclusters Using Ion Mobility Spectrometry–Mass Spectrometry and Infrared Action Spectroscopy

Polyoxometalate clusters possess unique catalytic and electromagnetic properties. The structure and function of polyoxometalates is dictated by complex oligomerization processes, which in turn depend on the solution conditions. In this work, small gas-phase polyoxomolybdate nanoclusters (HMonO3n+11–, n = 1–8, and MonO3n+12–, n = 2–8) were investigated after nanoelectrospray of an acidified solution of ammonium heptamolybdate heptahydrate by ion mobility spectrometry–mass spectrometry (IMS–MS), infrared multiple photon dissociation (IRMPD) spectroscopy, and infrared action spectroscopy in helium nanodroplets. The spectra and collision cross sections obtained were matched to predictions from density-functional theory (DFT) to unravel the structural progression of nanoclusters with increasing size. For doubly charged clusters, transitions among chain (n = 2–3), ring (n = 4–5), and compact (n ≥ 6) structures are observed in IMS–MS and IR spectroscopy experiments, in agreement with low-energy structures from DFT calculations. For singly charged clusters, reduced Coulombic repulsion and hydrogen bonding interactions are found to strongly influence the most stable cluster structure. Notably, a noncovalent ring structure is observed for HMo3O101–, stabilized by a strong intramolecular hydrogen bond, and a compact structure is observed for HMo5O161–, in contrast to the ring structure favored for Mo5O162–.

Four-Carbon Criegee Intermediate from Isoprene Ozonolysis: Methyl Vinyl Ketone Oxide Synthesis, Infrared Spectrum, and OH Production.

The reaction of ozone with isoprene, one of the most abundant volatile organic compounds in the atmosphere, produces three distinct carbonyl oxide species (RR'COO) known as Criegee intermediates: formaldehyde oxide (CH2OO), methyl vinyl ketone oxide (MVK-OO), and methacrolein oxide (MACR-OO). The nature of the substituents (R,R' = H, CH3, CH═CH2) and conformations of the Criegee intermediates control their subsequent chemistry in the atmosphere. In particular, unimolecular decay of MVK-OO is predicted to be the major source of hydroxyl radicals (OH) in isoprene ozonolysis. This study reports the initial laboratory synthesis and direct detection of MVK-OO through reaction of a photolytically generated, resonance-stabilized monoiodoalkene radical with O2. MVK-OO is characterized utilizing infrared (IR) action spectroscopy, in which IR activation of MVK-OO with two quanta of CH stretch at ca. 6000 cm-1 is coupled with ultraviolet detection of the resultant OH products. MVK-OO is identified by comparison of the experimentally observed IR spectral features with theoretically predicted IR absorption spectra. For syn-MVK-OO, the rate of appearance of OH products agrees with the unimolecular decay rate predicted using statistical theory with tunneling. This validates the hydrogen atom transfer mechanism and computed transition-state barrier (18.0 kcal mol-1) leading to OH products. Theoretical calculations reveal an additional roaming pathway between the separating radical fragments, which results in other products. Master equation modeling yields a thermal unimolecular decay rate for syn-MVK-OO of 33 s-1 (298 K, 1 atm). For anti-MVK-OO, theoretical exploration of several unimolecular decay pathways predicts that isomerization to dioxole is the most likely initial step to products.

Ground‐State Structure of the Proton‐Bound Formate Dimer by Cold‐Ion Infrared Action Spectroscopy

AbstractThe proton‐bound dicarboxylate motif, RCOO−⋅H+⋅−OOCR, is a prevalent chemical configuration found in many condensed‐phase systems. The proton‐bound formate dimer HCOO−⋅H+⋅−OOCH was studied utilizing cold‐ion IR action spectroscopy in the range 400–1800 cm−1. The spectrum obtained at ca. 0.4 K of ions captured in He nanodroplets was compared to that measured at ca. 10 K by photodissociation of Ar‐ion complexes. Similar band patterns are obtained by the two techniques that are consistent with calculations for a C2 symmetry structure with a proton shared equally between the two formate moieties. Isotopic substitution experiments point to the nominal parallel stretch of the bridging proton appearing as a sharp, dominant feature near 600 cm−1. Multidimensional anharmonic calculations reveal that the bridging proton motion is strongly coupled to the flanking −COO− framework, an effect that is in line with the expected change in −C=O bond rehybridization upon protonation.

Ground-State Structure of the Proton-Bound Formate Dimer by Cold-Ion Infrared Action Spectroscopy.

The proton-bound dicarboxylate motif, RCOO- ⋅H+ ⋅- OOCR, is a prevalent chemical configuration found in many condensed-phase systems. The proton-bound formate dimer HCOO- ⋅H+ ⋅- OOCH was studied utilizing cold-ion IR action spectroscopy in the range 400-1800 cm-1 . The spectrum obtained at ca. 0.4 K of ions captured in He nanodroplets was compared to that measured at ca. 10 K by photodissociation of Ar-ion complexes. Similar band patterns are obtained by the two techniques that are consistent with calculations for a C2 symmetry structure with a proton shared equally between the two formate moieties. Isotopic substitution experiments point to the nominal parallel stretch of the bridging proton appearing as a sharp, dominant feature near 600 cm-1 . Multidimensional anharmonic calculations reveal that the bridging proton motion is strongly coupled to the flanking -COO- framework, an effect that is in line with the expected change in -C=O bond rehybridization upon protonation.

Vibrational Spectroscopy of Fluoroformate, FCO2-, Trapped in Helium Nanodroplets.

Fluoroformate, also known as carbonofluoridate, is an intriguing molecule readily formed by the reductive derivatization of carbon dioxide. In spite of its well-known stability, a detailed structural characterization of the isolated anion has yet to be reported. Presented in this work is the vibrational spectrum of fluoroformate obtained by infrared action spectroscopy of ions trapped in helium nanodroplets, the first application of this technique to a molecular anion. The experimental method yields narrow spectral lines, providing experimental constraints on the structure that can be accurately reproduced using high-level ab initio methods. In addition, two notable Fermi resonances between a fundamental and combination band are observed. The electrostatic potential map of fluoroformate reveals substantial charge density on fluorine as well as on the oxygen atoms, suggesting multiple sites for interaction with hydrogen bond donors and electrophiles, which may in turn lead to intriguing solvation structures and reaction pathways.

Revealing isomerism in sodium-water clusters: Photoionization spectra of Na(H2O)n (n = 2-90).

Soft ionization of sodium tagged polar clusters is increasingly used as a powerful technique for sizing and characterization of small aerosols with possible application, e.g., in atmospheric chemistry or combustion science. Understanding the structure and photoionization of the sodium doped clusters is critical for such applications. In this work, we report on measurements of photoionization spectra for sodium doped water clusters containing 2-90 water molecules. While most of the previous studies focused on the ionization threshold of the Na(H2O)n clusters, we provide for the first time full photoionization spectra, including the high-energy region, which are used as reference for a comparison with theory. As reported in previous work, we have seen an initial drop of the appearance ionization energy with cluster size to values of about 3.2 eV for n<5. In the size range from n = 5 to n = 15, broad ion yield curves emerge; for larger clusters, a constant range between signal appearance (∼2.8 eV) and signal saturation (∼4.1 eV) has been observed. The measurements are interpreted with ab initio calculations and ab initio molecular dynamics simulations for selected cluster sizes (n≤ 15). The simulations revealed theory shortfalls when aiming at quantitative agreement but allowed us identifying structural motifs consistent with the observed ionization energy distributions. We found a decrease in the ionization energy with increasing coordination of the Na atom and increasing delocalization of the Na 3s electron cloud. The appearance ionization energy is determined by isomers with fully solvated sodium and a highly delocalized electron cloud, while both fully and incompletely solvated isomers with localized electron clouds can contribute to the high energy part of the photoionization spectrum. Simulations at elevated temperatures show an increased abundance of isomers with low ionization energies, an entropic effect enabling size selective infrared action spectroscopy, based on near threshold photoionization of Na(H2O)n clusters. In addition, simulations of the sodium pick-up process were carried out to study the gradual formation of the hydrated electron which is the basis of the sodium-tagging sizing.

Nonlinear effects in infrared action spectroscopy of silicon and vanadium oxide clusters: experiment and kinetic modeling

For structural assignment of gas phase compounds, infrared action spectra are usually compared to computed linear absorption spectra. However, action spectroscopy is highly nonlinear owing to the necessary transfer of the excitation energy and its subsequent redistribution leading to statistical ionization or dissociation. Here, we examine by joint experiment and dedicated modeling how such nonlinear effects affect the spectroscopic features in the case of selected inorganic clusters. Vibrational spectra of neutral silicon clusters are recorded by tunable IR-UV two-color ionization while IR spectra for cationic vanadium oxide clusters are obtained by IR multiphoton absorption followed by dissociation of the bare cluster or of its complex with Xe. Our kinetic modeling accounts for vibrational anharmonicities, for the laser interaction through photon absorption and stimulated emission rates, as well as for the relevant ionization or dissociation rates, all based on input parameters from quantum chemical calculations. Comparison of the measured and calculated spectra indicates an overall agreement as far as trends are concerned, except for the photodissociation of the V3O7(+)-Xe messenger complex, for which anharmonicities are too large and poorly captured by the perturbative anharmonic model. In all systems studied, nonlinear effects are essentially manifested by variations in the intensities as well as spectral broadenings. Differences in some band positions originate from inaccuracies of the quantum chemical data rather than specific nonlinear effects. The simulations further yield information on the average number of photons absorbed, which is otherwise unaccessible information: several to several tens of photons need to be absorbed to observe a band through dissociation, while three to five photons can be sufficient for detection of a band via IR-UV ionization.

IR Spectroscopic Techniques to Study Isolated Biomolecules.

The combination of mass spectrometry, infrared action spectroscopy and quantum-chemical calculations provides a variety of approaches to the study of the structure of biologically relevant molecules in vacuo. This chapter reviews some of the experimental methods that are currently in use, which can roughly be divided into two main categories: (1) low-temperature neutral molecules in a molecular beam environment, which can be investigated in a conformationally selective manner by the application of double-resonance laser spectroscopy and (2) ionized species which can conveniently be manipulated and selected by mass spectrometric methods and which can be investigated spectroscopically by wavelength-dependent photo-dissociation. Both approaches rely on the application of infrared tunable laser spectroscopy and the laser sources most commonly used in current studies are briefly reviewed in Sect. 3. Along with quantum-chemical calculations, reviewed in Chapter 3 of this book (Gaigeot and Spezia, Top Curr Chem doi:10.1007/128_2014_620), the experimental IR spectra reveal a wealth of information on the structural properties of the biological species.

Automation of an “Aculight” continuous-wave optical parametric oscillator

We report the automation of a continuous-wave, singly resonant, optical parametric oscillator (Lockheed-Martin Aculight ARGOS 2400-SF-15). This commercially available optical parametric oscillator (OPO) is capable of producing >1 W of continuously tunable idler output between 2.2 and 4.6 μm. An algorithm based on the feedback from a high accuracy wavemeter is implemented to synchronize three separate OPO tuning elements; the translation of a fan-out type periodically poled lithium niobate crystal, the rotation of an intracavity etalon, and the continuous tuning of the pump and idler wavelengths via piezoelectric strain of the tunable fiber pump laser. This allows for several hundred wavenumbers of efficient, automatic, continuous tuning of the idler wave. Continuous feedback from the wavemeter limits the absolute frequency accuracy to ±20 MHz. The broad, automatic tuning of the OPO is demonstrated via its implementation as a probe laser for the infrared action spectroscopy of methanol solvated in helium nanodroplets. LabVIEW virtual instruments for the automation of this OPO laser system are reported, along with detailed schematics of the associated hardware developed at the University of Georgia.

Cations in a Molecular Funnel: Vibrational Spectroscopy of Isolated Cyclodextrin Complexes with Alkali Metals

The benchmark inclusion complexes formed by α-cyclodextrin (αCD) with alkali-metal cations are investigated under isolated conditions in the gas phase. The relative αCD-M(+) (M=Li(+), Na(+), K(+), Cs(+)) binding affinities and the structure of the complexes are determined from a combination of mass spectrometry, infrared action spectroscopy and quantum chemical computations. Solvent-free laser desorption measurements reveal a trend of decreasing stability of the isolated complexes with increasing size of the cation guest. The experimental infrared spectra are qualitatively similar for the complexes with the four cations investigated, and are consistent with the binding of the cation within the primary face of the cyclodextrin, as predicted by the quantum computations (B3LYP/6-31+G*). The inclusion of the quantum-chemical cation disrupts the C(6) symmetry of the free cyclodextrin to provide the optimum coordination of the cations with the -CH(2)OH groups in C(1), C(2) or C(3) symmetry arrangements that are determined by the size of the cation.

Structure characterization of metal oxide clusters by vibrational spectroscopy: possibilities and prospects

This article summarizes the methodological progress that has been made in the vibrational spectroscopy of isolated polynuclear metal oxide clusters, with particular emphasis on free electron laser-based infrared action spectroscopy of gas phase clusters, over the last decade. The possibilities, limitations and prospects of the various experimental approaches are discussed using representative examples from pivotal studies in the field.

Analysis of the HOOO torsional potential

Torsional levels of cis and trans HOOO and DOOO, observed previously via infrared action spectroscopy [E. L. Derro, T. D. Sechler, C. Murray, and M. I. Lester, J. Chem. Phys. 128, 244313 (2008)], have been used in conjunction with ab initio theory to obtain a torsional potential energy surface for the hydrotrioxy radical. High level electronic structure calculations based on the equation-of-motion coupled-cluster method for ionized states (EOMIP-CCSD) are utilized to produce a torsional potential. Eigenvalues of the potential are computed by diagonalizing the torsional hamiltonian in a free-rotor basis. Uniform scaling of the theoretical potential by a factor of 1.35 yields vibrational frequencies in good agreement with the experiment, and allows prediction of the barrier height to isomerization of ∼340 cm(-1) and relative stability of trans-HOOO with respect to cis-HOOO of ∼70 cm(-1). Examination of the optimized nuclear coordinates with respect to the torsional angle, suggests that the central O-O bond length is strongly coupled to the torsion and is important in determining the relative stabilities of the two conformers. The scaled potential is then used to determine the torsional contribution to the partition function for atmospheric modeling of HOOO.

Infrared Spectrum and Stability of the H2O−HO Complex: Experiment and Theory

Infrared action spectroscopy is utilized to characterize the gas-phase, hydrogen-bonded H(2)O-HO complex, a primary interaction in the hydration of the hydroxyl radical. The OH radical stretch of the H(2)O-HO complex is identified at 3490 cm(-1), shifted 78 cm(-1) to lower frequency of the OH monomer transition. The stability of the complex, D(0) < or = 5.14 kcal mol(-1), is derived from the highest observed OH product channel in the associated product state distribution. The assignment is supported by high level ab initio calculations of the spectral shift of the binary complex from free OH and its dissociation energy, D(e)(CBS-infinity) = 5.6 kcal mol(-1). A second weaker feature, appearing 15 cm(-1) to lower frequency at 3475 cm(-1), is attributed to a hot band, the OH radical stretch originating from an out-of-plane H(2)O bending state, based on two-dimensional calculations of frequencies and strengths of transitions involving the coupled vibrational modes.

Weakly Bound Molecules in the Atmosphere: A Case Study of HOOO

Weakly bound molecules--particularly hydrated complexes of abundant atmospheric species--have long been postulated to play an important role in atmospherically relevant reactions. For example, such complexes could seed cloud formation and alter the global radiation budget. In this Account, we initially describe the current data on weakly bound species produced in association reactions of the hydroxyl radical (OH) with molecular partners, particularly oxygen (O(2)), nitric acid (HONO(2)), and nitrogen dioxide (NO(2)). Researchers have identified weakly bound association products of these reactions as the hydrogen trioxy (HOOO) radical, the doubly hydrogen-bonded OH-HONO(2) complex, and peroxynitrous acid (HOONO), respectively. In each case, previous kinetic studies of the reaction or OH vibrational relaxation processes have indicated unusual, non-Arrhenius behavior. Under the temperature-pressure conditions of the Earth's lower atmosphere, these processes exhibit a negative temperature dependence, indicative of an attractive interaction, or a pressure dependence. Researchers have subsequently carried out extensive theoretical studies of the properties of these weakly bound molecules, but the theoretical studies have lacked experimental validation. Next, we describe experimental studies to determine the vibrational frequencies and stability of HOOO as a prototypical example of these weakly bound molecules. We then use these data to assess its importance in the atmosphere. We discuss the efficient production of the HOOO radical from OH and O(2) under laboratory conditions and its subsequent detection using infrared action spectroscopy, a highly sensitive and selective double resonance technique. Using excitation of OH stretch and combination bands comprising OH stretch with lower frequency modes, we obtain detailed spectroscopic information on the vibrational modes of the two conformers of HOOO. In addition, we infer fundamental information about the dissociation dynamics from the OH product state distribution, which provides insight into the chemical bonding in HOOO. Perhaps most importantly, we utilize a simple conservation of energy relationship based on the highest energetically open OH product state to derive a rigorous upper limit for the stability of HOOO relative to the OH + O(2) asymptote of 5.3 kcal mol(-1). When combined with previous experimental rotational constants that reflect the structure of the HOOO radical, our laboratory characterization of its stability and vibrational frequencies provides critical information to assess its thermochemical properties. Using standard statistical mechanics approaches, we can calculate the likely atmospheric abundance of HOOO. We estimate that up to 25% of the OH radicals in the vicinity of the tropopause may be associated with O(2) as a weakly bound molecule.