Abstract. Coastal wetland vegetation modulates water flow by exerting drag, which has important implications for sediment transport and geomorphic dynamics. This vegetation effect on flow is commonly represented in hydrodynamic models by approximating the vegetation as an array of vertical cylinders or increased bed roughness. However, this simple approximation may not be valid in the case of Rhizophora mangroves that have complicated three-dimensional root structures. Here, we present a new model to represent the impact of Rhizophora mangroves on flow in hydrodynamic models. The model explicitly accounts for the effects of the three-dimensional root structures on mean flow and turbulence as well as for the effects of two different length scales of vegetation-generated turbulence characterized by stem diameter and root diameter. The model employs an empirical model for the Rhizophora root structures that can be applied using basic vegetation parameters (mean stem diameter and tree density) without rigorous measurements of the root structures. We tested the model against the flows measured by previous studies in a model mangrove forest in the laboratory and an actual mangrove forest in the field, respectively. We show that, compared with the conventional approximation using an array of cylinders or increased bed roughness, the new model significantly improves the predictability of velocity, turbulent kinetic energy, and bed shear stress in Rhizophora mangrove forests. Overall, the presented new model offers a more realistic but feasible framework for simulating flows in Rhizophora mangrove forests with complex root structures using hydrodynamic models.