Rearrangement Of Hydrogen Bonds Research Articles

A machine learned potential for investigating single crystal to single crystal transformations in complex organic molecular systems.

The packing of organic molecular crystals is often dominated by weak non-covalent interactions, making their in situ rearrangement under external stimuli challenging to understand. We investigate a pressure-induced single-crystal-to-single-crystal (SCSC) transformation between two polymorphs of 2,4,5-triiodo-1H-imidazole using machine learning potentials. This process involves the rearrangement of halogen and hydrogen bonds combined with proton transfer within a complex solid-state system. We developed a strategy to progressively approach the transition state along the phase transition path from both ends by using both the α and β crystal phases as initial structures for active learning. This method allowed us to develop a DFT-based machine learning potential that faithfully describes both of the stable phases and the transition processes. Our results demonstrate that these anisotropic interactions are represented accurately during molecular dynamic simulations. Bond breaking and reforming during proton transfer is observed and analysed in detail. This approach holds promise for simulating SCSC transitions in organic molecular crystals involving anisotropic interactions and chemical bond changes.

Locking Alignment of Liquid Crystal Actuators Using Hydrogen Bonds to Enable Room‐Temperature Shape Programmability and Enhanced Work Capacity

AbstractSoft actuators that mimic the softness and deformability of living organisms have great potential for use in various fields. For most soft actuators, achieving both reprogrammable shape and high work capacity is crucial but challenging. These properties are mutually exclusive for liquid crystal elastomers (LCEs), an important type of soft actuators. Herein, a room‐temperature shape‐programmable LCE capable of high‐energy actuation is developed. Our approach utilizes hydrogen bonds to stabilize the aligned liquid crystal phases. The slow recovery of H‐bonds at room temperature provides a specific processing window, during which the sample shape can be programmed after the thermal treatment. The temperature‐dependent rearrangement of hydrogen bonds allows for fabrication of actuators with customized shapes in a facile do‐it‐yourself manner. Additionally, the integration of strong covalent cross‐links is vital for holding structural integrity. The combination of non‐covalent and covalent cross‐linking significantly improves the mechanical properties, enabling the actuators to perform reversible actuation with a work capacity (440 kJ m−3) higher than that of traditional LCEs (<100 kJ m−3). This study provides a turnkey strategy to address the conflict between shape reprogrammability and work capacity, advancing the development of soft actuators.

Pathogenic G6PD variants: Different clinical pictures arise from different missense mutations in the same codon.

G6PD deficiency results from mutations in the X-linked G6PD gene. More than 200 variants are associated with enzyme deficiency: each one of them may either cause predisposition to haemolytic anaemia triggered by exogenous agents (class B variants), or may cause a chronic haemolytic disorder (class A variants). Genotype-phenotype correlations are subtle. We report a rare G6PD variant, discovered in a baby presenting with severe jaundice and haemolytic anaemia since birth: the mutation of this class A variant was found to be p.(Arg454Pro). Two variants affecting the same codon were already known: G6PD Union, p.(Arg454Cys), and G6PD Andalus, p.(Arg454His). Both these class B variants and our class A variant exhibit severe G6PD deficiency. By molecular dynamics simulations, we performed a comparative analysis of the three mutants and of the wild-type G6PD. We found that the tetrameric structure of the enzyme is not perturbed in any of the variants; instead, loss of the positively charged Arg residue causes marked variant-specific rearrangement of hydrogen bonds, and it influences interactions with the substrates G6P and NADP. These findings explain severe deficiency of enzyme activity and may account for p.(Arg454Pro) expressing a more severe clinical phenotype.

Enhancing PA-PBI Composite Membrane with Metal Oxides Incorporation for HT-PEMFC Operating Above 200 oc

High-temperature polymer electrolyte membrane fuel cells (HT-PEMFCs) are renowned for their excellent CO tolerance and rapid reaction kinetics [1]. Among the various membrane types, phosphoric acid doped polybenzimidazole (PA-PBI) membranes, phosphoric acd (PA) acts as a proton conductor, facilitating proton transfer through hydrogen bond rearrangement between PA molecules and the PBI backbone [2]. However, the operating temperature of PA-PBI membrane-based HT-PEMFC is constrained by the condensation of PA, limiting their use to below 180 oC and posing a significant challenge for achieving efficient operation above 200 oC.Recent research endeavors have focused on enhancing PA-PBI membranes by incorporating metal oxides to extend their operational temperature range beyond 180 oC. The addition of metal oxides into PA solution leads to the formation of metal hydrogen phosphate, effectively preventing PA evaporation at elevated temperatures ( > 180 oC) and maintaining membrane performance without degradation. Furthermore, the presence of metal oxides facilitates proton transfer to the metal hydrogen phosphate surface, thereby improving ionic conductivity even at temperatures exceeding 200 oC.In this study, we present the synthesis of poly(2,2’-(1,4-phenylene)-5,5’ bibenzimidaozle) (pPBI) composite membranes through an in-situ method, where various metal oxides (SnO2, TiO2, ZrO2) are introduced into the synthesis solution. Through systematic investigation, we evaluate the impact of these metal compounds on fuel cell performance and durability at high temperatures exceeding 200 oC. Our findings shed light on the potential of metal oxide-modified PA-PBI composite membranes for advancing the performance and reliability of HT-PEMFCs in demanding operating conditions.

Transition Behaviors of Isostructural Hydrogen-Bonded Frameworks Composed of Naphthalene, Quinoxaline, and Pyrazinopyrazine Derivatives.

A series of isostructural reticular frameworks with systematic differences on chemical structures allows us to disclose correlations between specific structural factors and properties, providing insights for designing novel porous materials. However, even slight differences in the molecular structure often lead to non-isostructural polymorphic frameworks particularly in the case of hydrogen-bonded organic frameworks (HOFs) because the structures of HOFs are based on a subtle balance of reversible interactions. In this study, we found that three simple analogues of tetracarboxylic acids with naphthalene, quinoxaline, and pyrazinopyrazine cores (NT, QX, and PP, respectively) yielded isostructural solvated HOFs (NT-1, QX-1, and PP-1, respectively), where hydrogen-bonded sql-networked sheets were slip-stacked with closely similar manners. More importantly, these isostructural HOFs underwent structural transformations in different manners upon removal of the guest solvents. Comparison of the crystal structures of the HOFs before and after the transformation revealed that intermolecular interactions of the core significantly affected on rearrangements of hydrogen bonds in the transformation. The results suggest the potential to control the properties and functions of isostructural HOFs by elements in the core.

60 Years of Betaine 30─From Solvatochromic Discovery to Future Frontiers.

Betaine-30 (B30) was reported by Karl Dimroth and Christian Reichardt et al. in 1963 as a solvatochromic probe that can be easily synthesized, shows good solubility, and remains stable in various organic solvents and solutions. Its strongly negatively solvatochromic behavior arises from differential solvation between its electronic ground and excited states, making it a valuable tool for assessing solvent polarity using the ET(30) polarity scale, also devised by Dimroth and Reichardt. In addition, advancements in femtosecond laser spectroscopy in the 1990s greatly improved the understanding of B30's relaxation dynamics following photoexcitation. In solvents capable of hydrogen bonding, such as alcohols, intermolecular hydrogen-bond rearrangement contributes to the multiple relaxation components observed. Since the 1990s, the applications of B30 have expanded beyond simple organic solvents to include complex solvent mixtures, such as electrolyte solutions for battery technologies and eutectic solvent mixtures. Given the growing importance of these complex solvent mixtures, B30 is becoming an increasingly valuable tool for studying previously unexplored solvation properties.

Highly Efficient, Recyclable Microplastic Adsorption Enabled by Chitin Hydrogen Bond Network Rearrangement

AbstractA sustainable strategy based on chitin from waste seafood is proposed to remove nano‐size microplastics in water. A chitin nanofibrous foam is constructed by a new hydrogen bond rearrangement scheme without any crosslinking, which delivers an impressive high adsorption capacity of 411.14 ± 1.50 mg g−1 for small‐sized (< 1 µm) microplastics. This excellent adsorption capacity stems from the rough fibrous surface structure of the highly porous foam, the positively charged nature of the partially deacetylated chitin and other molecular interactions introduced by the activation and increased exposure of ‐OH, ‐NH2 and ‐NHCO‐ groups. Molecular dynamics simulation further demonstrates that C‐H‐π, O‐H‐π, and C = O‐π interactions between the microplastics and chitin foam facilitates the efficient removal of microplastics. A high removal efficiency is maintained even in salty water, a property that exemplifies good adaptability to various water bodies. Finally, two proof‐of‐principle scenarios are presented for converting the recovered microplastics into value‐added products. Thus, the entire cycling strategy represents a powerful remedy for the urgent yet challenging ocean microplastic pollution problem.

Identification of Residues Potentially Involved in Optical Shifts in the Water-Soluble Chlorophyll a-Binding Protein through Molecular Dynamics Simulations.

Reversible light and thermally induced spectral shifts are universally observed in a wide variety of pigment-protein complexes at temperatures ranging from cryogenic to ambient. In this paper, we employed large-scale molecular dynamics (MD) simulations of a prototypical pigment-protein complex to better understand these shifts at a molecular scale. Although multiple mechanisms have been proposed over the years, no verification of these proposals via MD simulations has thus far been performed; our work represents the first step in this direction. From simulations of the water-soluble chlorophyll-binding protein complex, we determined that rearrangements of long hydrogen bonds were unlikely to be the origin of the multiwell landscape features necessary to explain observed spectral shifts. We also assessed small motions of amino acid residues and identified side chain rotations of some of these residues as likely candidates for the origin of relevant multiwell landscape features. The protein free-energy landscapes associated with side chain rotations feature energy barriers of around 1100-1600 cm-1, in agreement with optical spectroscopy results, with the most promising residue type associated with experimental signatures being serine, which possesses a symmetric triple-well landscape and moment of inertia of a relevant magnitude.

Molecular mechanism of regulation of RhoA GTPase by phosphorylation of RhoGDI

Rho-specific guanine nucleotide dissociation inhibitors (RhoGDIs) play a crucial role in the regulation of Rho family GTPases. They act as negative regulators that prevent the activation of Rho GTPases by forming complexes with the inactive GDP-bound state of GTPase. Release of Rho GTPase from the RhoGDI-bound complex is necessary for Rho GTPase activation. Biochemical studies provide evidence of a "phosphorylation code," where phosphorylation of some specific residues of RhoGDI selectively releases its GTPase partner (RhoA, Rac1, Cdc42, etc.). This work attempts to understand the molecular mechanism behind this specific phosphorylation-induced reduction in binding affinity. Using several microseconds long atomistic molecular dynamics simulations of the wild-type and phosphorylated states of the RhoA-RhoGDI complex, we propose a molecular-interaction-based mechanistic model for the dissociation of the complex. Phosphorylation induces major structural changes, particularly in the positively charged polybasic region (PBR) of RhoA and the negatively charged N-terminal region of RhoGDI that contribute most to the binding affinity. Molecular mechanics Poisson-Boltzmann surface area binding energy calculations show a significant weakening of interaction on phosphorylation at the RhoA-specific site of RhoGDI. In contrast, phosphorylation at a Rac1-specific site does not affect the overall binding affinity significantly, which confirms the presence of a phosphorylation code. RhoA-specific phosphorylation leads to a reduction in the number of contacts between the PBR of RhoA and the N-terminal region of RhoGDI, which manifests a reduction of the binding affinity. Using hydrogen bond occupancy analysis and energetic perturbation network, we propose a mechanistic model for the allosteric response, i.e., long-range signal propagation from the site of phosphorylation to the PBR and buried geranylgeranyl group in the form of rearrangement and rewiring of hydrogen bonds and salt bridges. Our results highlight the crucial role of specific electrostatic interactions in manifestation of the phosphorylation code.

Proton Conduction in Gly-X (X = Ser, Ser-Gly-Ser) and GS50.

In recent years, the use of biomaterials has been required from the viewpoint of biocompatibility of electronic devices. In this study, the proton conductivity of Glycyl-L-serine (Gly-Ser) was investigated to clarify the relationship between hydration and proton conduction in peptides. From the crystal and conductivity data, it was inferred that the proton conductivity in hydrated Gly-Ser crystals is caused by the cleavage and rearrangement of hydrogen bonds between hydration shells formed by hydrogen bonds between amino acids and water molecules. Moreover, a staircase-like change in proton conduction with hydration was observed at n = 0.3 and 0.5. These results indicate that proton transport in Gly-Ser is realized by hydration water. In addition, we also found that hydration of GSGS and GS50 can achieve proton conduction of Gly-Ser tetrameric GSGS and GS50 containing repeating sequences. The proton conductivity at n = 0.3 is due to percolation by the formation of proton-conducting pathways. In addition to these results, we found that proton conductivity at GS50 is realized by the diffusion constant of 3.21 × 10-8 cm2/s at GS50.

Understanding the Multifaceted Mechanism of Compound I Formation in Unspecific Peroxygenases through Multiscale Simulations.

Unspecific peroxygenases (UPOs) can selectively oxyfunctionalize unactivated hydrocarbons by using peroxides under mild conditions. They circumvent the oxygen dilemma faced by cytochrome P450s and exhibit greater stability than the latter. As such, they hold great potential for industrial applications. A thorough understanding of their catalysis is needed to improve their catalytic performance. However, it remains elusive how UPOs effectively convert peroxide to Compound I (CpdI), the principal oxidizing intermediate in the catalytic cycle. Previous computational studies of this process primarily focused on heme peroxidases and P450s, which have significant differences in the active site from UPOs. Additionally, the roles of peroxide unbinding in the kinetics of CpdI formation, which is essential for interpreting existing experiments, have been understudied. Moreover, there has been a lack of free energy characterizations with explicit sampling of protein and hydration dynamics, which is critical for understanding the thermodynamics of the proton transport (PT) events involved in CpdI formation. To bridge these gaps, we employed multiscale simulations to comprehensively characterize the CpdI formation in wild-type UPO from Agrocybe aegerita (AaeUPO). Extensive free energy and potential energy calculations were performed in a quantum mechanics/molecular mechanics setting. Our results indicate that substrate-binding dehydrates the active site, impeding the PT from H2O2 to a nearby catalytic base (Glu196). Furthermore, the PT is coupled with considerable hydrogen bond network rearrangements near the active site, facilitating subsequent O-O bond cleavage. Finally, large unbinding free energy barriers kinetically stabilize H2O2 at the active site. These findings reveal a delicate balance among PT, hydration dynamics, hydrogen bond rearrangement, and cosubstrate unbinding, which collectively enable efficient CpdI formation. Our simulation results are consistent with kinetic measurements and offer new insights into the CpdI formation mechanism at atomic-level details, which can potentially aid the design of next-generation biocatalysts for sustainable chemical transformations of feedstocks.

Scott Blair Fractional-Type Viscoelastic Behavior of Thermoplastic Polyurethane.

In this paper, the experimental characterization of the viscoelastic properties of thermoplastic polyurethane (TPU) samples through creep experiments is presented. Experiments were conducted at different constant temperature levels (15, 25, and 35 ∘C), for three different tensile stress levels (0.3, 0.5, and 0.7 MPa), and at different physisorbed water contents, providing access to: (i) the temperature dependency of creep parameters and (ii) the assessment, if behavior is indeed viscoelastic. The physisorbed water content was achieved by exposing virgin samples to environments with relative humidity ranging from 0 to 80 percent until mass stability was reached. Creep tests were conducted immediately afterwards with this particular humidity level. The main results of this study are as follows. The temperature dependency of the obtained creep parameters is well described in Arrhenius plots. With regard to water content, two prototype material responses were observed in the experimental program and accurately modeled using the following fractional-type models: (i) Scott Blair-type (i.e., power-law-type) only behavior, pronounced for the combination of low water content/low temperature; (ii) combined Scott Blair plus Lomnitz (i.e., log-type) behavior for high water content/high temperature. This change in behavior associated with certain thresholds for the specified environmental conditions (temperature and relative humidity) may indicate the initiation of hydrogen bond breakage and rearrangement (carbamate H-bonds and physisorbed water H-bonds). Regarding the short-term or quasi-instantaneous behavior, the Scott Blair element seems highly appropriate and may be better suited than the standard elastic model: the Hookean spring. We associated Scott Blair behavior with the load-induced, quasi-instantaneous re-arrangement of polymer network chains. The secondary viscoelastic mechanism associated with the Lomnitz element, hydrogen bond breakage and rearrangement, comes into play for higher temperatures and/or higher physisorbed water contents. In this case, the contribution of the two constitutive elements is well separated due to the large number of the characteristic time of the Lomnitz element, much larger than the respective value for the Scott Blair element.

The Content and Principle of the Rare Ginsenosides Produced from Gynostemma pentaphyllum after Heat Treatment.

Ginsenoside Rg3, Rk1, and Rg5, rare ginsenosides from Panax ginseng, have many pharmacological effects, which have attracted extensive attention. They can be obtained through the heat treatment of Gynostemma pentaphyllum. In this study, scanning electron microscopy (SEM) and thermal gravity-differential thermal gravity (TG-DTG) were employed to investigate this process and the content change in ginsenosides was analyzed using liquid chromatography-mass spectrometry (LC-MS). SEM and TG-DTG were used to compare the changes in the ginsenosides before and after treatment. In SEM, the presence of hydrogen bond rearrangement was indicated by the observed deformation of vascular bundles and ducts. The before-and-after changes in the peak patterns and peaks values in TG-DTG indicated that the content of different kinds of compounds produced changes, which all revealed that the formation of new saponins before and after the heat treatment was due to the breakage or rearrangement of chemical bonds. Additionally, the deformation of vascular bundles and vessels indicated the presence of hydrogen bond rearrangement. The glycosidic bond at the 20 positions could be cleaved by ginsenoside Rb3 to form ginsenoside Rd, which, in turn, gave rise to ginsenoside Rg3(S) and Rg3(R). They were further dehydrated to form ginsenoside Rk1 and Rg5. This transformation process occurs in a weak acidic environment provided by G. pentaphyllum itself, without the involvement of endogenous enzymes. In addition, the LC-MS analysis results showed that the content of ginsenoside Rb3 decreased from 2.25 mg/g to 1.80 mg/g, while the contents of ginsenoside Rk1 and Rg5 increased from 0.08 and 0.01 mg/g to 3.36 and 3.35 mg/g, respectively. Ginsenoside Rg3(S) and Rg3(R) were almost not detected in G. pentaphyllum, and the contents of them increased to 0.035 and 0.23 mg/g after heat treatment. Therefore, the rare ginsenosides Rg3(S), Rg3(R), Rk1, and Rg5 can be obtained from G. pentaphyllum via heat treatment.

Optical control of ultrafast structural dynamics in a fluorescent protein

The photoisomerization reaction of a fluorescent protein chromophore occurs on the ultrafast timescale. The structural dynamics that result from femtosecond optical excitation have contributions from vibrational and electronic processes and from reaction dynamics that involve the crossing through a conical intersection. The creation and progression of the ultrafast structural dynamics strongly depends on optical and molecular parameters. When using X-ray crystallography as a probe of ultrafast dynamics, the origin of the observed nuclear motions is not known. Now, high-resolution pump–probe X-ray crystallography reveals complex sub-ångström, ultrafast motions and hydrogen-bonding rearrangements in the active site of a fluorescent protein. However, we demonstrate that the measured motions are not part of the photoisomerization reaction but instead arise from impulsively driven coherent vibrational processes in the electronic ground state. A coherent-control experiment using a two-colour and two-pulse optical excitation strongly amplifies the X-ray crystallographic difference density, while it fully depletes the photoisomerization process. A coherent control mechanism was tested and confirmed the wave packets assignment.

Hydration and proton conductivity in the Gly-Pro crystal

Recently, the use of biomaterials in electronic devices has been demanded from the viewpoint of the biocompatibility of devices. In this study, to clarify the relationship between the hydration in peptides and proton conduction, we have investigated the proton conductivity of Glycyl-l-proline (Gly-Pro). We found that proton conductivity in Gly-Pro is realized by hydration. It is deduced from the crystal data and conductivity data that proton conductivity in the hydrated Gly-Pro crystal is caused by the breaking and rearrangement of hydrogen bonds along the c-axis between hydration shells, which are formed by the hydrogen bond between the amino acid and water molecules. We also found that the steep increases in proton conductivity at the hydration numbers n ∼ 0.15 and n ∼ 0.35 result from the formation of the percolation network and faster rearrangement of hydrogen bonds inter-/intra-hydrated shells, respectively.

Preparation and structural analysis of humic acid by co-thermal oxidation of wheat straw and Heilongjiang lignite

Combining with the characteristics of high yield of mineral humic acid (HA) and high activity of biochemical HA, co-thermal oxidation of low rank coal and biomass to produce complex HA (MIXHA) was newly proposed. The mixture (MIX) of Heilongjiang lignite (HL) and wheat straw (WS) was co-thermally oxidized in 10% HNO3 solution to prepare MIXHA. This work focused on comparison of the macro morphology and microstructure of MIXHA between HLHA and WSHA by SEM, FT-IR and 13C NMR analyses, and explored the synergistic effect between HL and WS during the co-thermal oxidation process. The results show that MIXHA content is higher than the theoretical value. Decomposition of HNO3 molecular produces active oxygen atoms and nitrogen oxides to attack the molecular structure of WS and HL. Due to hydrogen bond rearrangement, glycosidic bond rupture, and crosslinking, plenty of alkyl radicals generated in WS are combined with the condensation aromatic ring in HL. Thus, the protonated aromatic carbon is changed into aliphatic substituted aromatic carbon. The obtained MIXHA is rich in oxygen-containing functional groups, and has high activity. Obvious characteristic peaks are observed in FT-IR spectra of MIXHA. This work would provide a new idea for classification and resource utilization of low-rank coal and agricultural and forestry wastes.

Luminescence and Dielectric Switchable Properties of a 1D (1,1,1-Trimethylhydrazinium)PbI3 Hybrid Perovskitoid.

The synthesis and investigation of the physicochemical properties of a novel one-dimensional (1D) hybrid organic-inorganic perovskitoid templated by the 1,1,1-trimethylhydrazinium (Me3Hy+) cation are reported. (Me3Hy)[PbI3] crystallizes in the hexagonal P63/m symmetry and undergoes two phase transitions (PTs) during heating (cooling) at 322 (320) and 207 (202) K. X-ray diffraction data and temperature-dependent vibrational studies show that the second-order PT to the high-temperature hexagonal P63/mmc phase is associated with a weak change in entropy and is related to weak structural changes and different confinement of cations in the available space. The second PT to the low-temperature orthorhombic Pbca phase that corresponds to the high change in entropy and dielectric switching is associated with an ordering of the trimethylhydrazinium cations, re-arrangement and strengthening of hydrogen bonds, and slightly shifted lead-iodide octahedral chains. The high-pressure Raman data revealed two additional PTs, one between 2.8 and 3.2 GPa, related to the symmetry decrease, ordering of the cations, and inorganic chain distortion, and the other in the 6.4-6.8 GPa range related to the partial and reversible amorphization. Optical studies revealed that (Me3Hy)[PbI3] has a wide band gap (3.20 eV) and emits reddish-orange excitonic emission at low temperatures with an activation energy of 65 meV.

Rearrangement of hydrogen bonds in dehydrated raffinose tetrahydrate: a time-of-flight neutron diffraction study.

Structural changes of the raffinose crystal on dehydration from the pentahydrate to the tetrahydrate were investigated by single-crystal time-of-flight neutron diffraction. It was revealed that during the dehydration, rearrangement occurs in the hydrogen bonds related to the lost water molecule, while the symmetry of the crystal structure is retained. The hydrogen-bonding status of raffinose pentahydrate and tetrahydrate were discussed comprehensively according to Jeffrey's hydrogen-bonding classification. It was shown that the water molecules are hydrogen bonded to the surrounding molecules by moderate O-H...O hydrogen bonds and weak C-H...O hydrogen bonds, and the number of these two types of hydrogen bonds determines the water molecules that are removed by dehydration. The lattice constant c showed a significant decrease on dehydration and further dehydration leads to loss of crystallinity of the raffinose crystals.

London Dispersion-Assisted Low-Temperature Gas Phase Synthesis of Hydrogen Bond-Inserted Complexes

AbstractSupersonic expansions of organic molecules in helium carrier gas mixtures are used to synthesize model (pre)reactive complexes at low temperature. Whether or not barriers for hydrogen bond rearrangements can be overcome in this collisional process is not well understood. Using the example of alcohols inserting into intramolecular hydrogen bonds of α-hydroxy esters, we explore whether dispersion energy donors can assist the process in a systematic way. Bromo, iodo, and tert-butyl substitution of benzyl alcohol in the para-position is used to show that the insertion process into methyl glycolate is controllable, whereas it is largely avoided for the chiral methyl lactate homologue. Methyl lactate appears to steer the transient chirality of benzyl alcohol derivatives in a uniform direction relative to the lactate handedness for the OH∙∙∙O=C insertion product, as well as for the competing attachment to the hydroxy group of the ester. A simple rule based on the total binding energy in relation to the rearrangement barrier is tentatively proposed to estimate whether the insertion is feasible or not in such molecular complexes during expansion.

Geometrically Mismatched Hydrogen-bonded Framework Composed of Tetratopic Carboxylic Acid.

Porous organic frameworks possessing interactive free sites in the pore have attracted much attention due to their potential to show the site-originated specific functionalities. Herein, we demonstrate that such a framework could be constructed using a concept of geometrically mismatched frameworks composed of phenanthroline-based tetratopic carboxylic acid CP-Phen. Simple recrystallization of CP-Phen yielded a solvent included porous framework CP-Phen-1, in which three of four carboxy groups form hydrogen-bonded dimer to form a ladder-shaped framework, while the remained one does not participate in framework formation due to geometrical mismatch and interacts with solvent molecules through weak hydrogen-bonding. This result implies that our proposed strategy is effective to provide free interactive sites in porous frameworks. Although CP-Phen-1 undergoes two-step structural transformation presumably accompanied by hydrogen-bond rearrangements upon loss of solvent molecules, the activate framework shows good thermal stability up to 360 °C and selective CO2 adsorption.