Higher Litter Size Research Articles

Novel single nucleotide polymorphism G216A of hormone-sensitive lipase gene associated with Awassi sheep reproduction

BackgroundLitter size plays a crucial role in determining profitability in the sheep industry. Breeding sheep with high litter sizes could be enhanced by selecting candidate genes. One gene affecting sheep's reproductive performance is the hormone-sensitive lipase (HSL) gene. As a result, this study investigated whether the HSL gene variation influenced the fertility of Awassi ewes. The genomic DNA was extracted from 52 singleton ewes and 48 twin ewes. The HSL gene exon 9 (278 bp) was amplified using polymerase chain reaction (PCR).ResultsStudy results revealed two genotypes identified in the 278-bp amplicons: GG and GA. Molecular sequence analysis identified a novel mutation in the GA genotype 216G > A. The statistical analysis revealed a significant association between the single nucleotide polymorphism (SNP) 216A > G and reproductive performance. Ewes with the SNP 216G > A genotype exhibited significantly increased litter sizes, twinning rates, lambing rates, and fewer days to lambing compared to ewes with GG genotypes (P ≤ 0.05). The logistic regression analysis results provided strong evidence that the 216G > A mutation significantly increased litter sizes.ConclusionsThis study concluded that variant 216G > A SNP positively impacts Awassi sheep reproduction. There is a higher litter size and more prolificacy in ewes with the 216G > A SNP than in those without the SNP.

Sow and litter performance after cross-fostering one surplus piglet and co-mingling the litters at early lactation

The number of piglets born alive is frequently greater than the functional teats, and some farms are equalizing litters with surplus piglets, limiting piglet udder access. Removing the barrier among farrowing crates may allow piglets to socialize and seek other sows. Thus, we evaluated the effects litter size at cross-fostering and socialization on the sow and piglet performance during lactation. Two factors were included in a 2 × 2 factorial design: socialization and litter size relative to sow functional teat number at cross-fostering. Litters (n = 189) were then assigned to one of four groups: CONT+0 (litters not co-mingled with no additional piglet), CONT+1 (not co-mingled with one additional piglet), Co-M+0 (co-mingled with no additional piglet), Co-M+1 (co-mingled with one additional piglet). Piglets were cross-fostered from 12–16 h after birth, and 24 h later, Co-M groups were socialized by removing the barrier between two adjacent pens. During lactation, sows lost more caliper units in the + 1 group than in the + 0 group (P = 0.04). The number of functional teats did not differ among groups, but Co-M sows had a higher udder lesion score at weaning than CONT (6.55 vs 4.83; P < 0.01). Furthermore, +1 sows had fewer vacant teats throughout lactation (P < 0.01). Milk yield did not differ among the groups (P ≥ 0.13). Regarding the number of weaned piglets, no difference was observed for socialization (P = 0.84), but + 1 sows weaned 0.67 more piglets than + 0 (P < 0.01). Although CONT+0 had the heaviest piglets at weaning (P < 0.01), litter weight did not differ among the groups (P ≥ 0.08). Facial and joint lesions were frequently observed in Co-M (P < 0.01) than CONT. Piglet loss rate did not differ among treatments (overall rate = 12.6%; P ≥ 0.26). The removal rate, however, was more frequent in + 1 litters than in + 0 (P < 0.01). Death due to starvation was higher in CONT+1 than CONT+0 (P < 0.01) but did not differ between the Co-M groups (P = 0.99). Litters formed with one additional piglet relative to functional teat number weaned more piglets, albeit with lower individual weight. Litter socialization may alleviate the impact of high litter size but shows greater percentages of udder injuries and facial and joint lesions in weaned piglets.

Sheep litter size heredity basis using genome-wide selective analysis.

Sheep are important herbivorous domestic animal globally, and the Chinese indigenous sheep breed has a multitude of economically significant variations due to the diverse geographical and ecological conditions. In particular, certain native breeds exhibit a visible high litter size phenotype due to the selection pressure of natural and artificial for thousands of years, offering an ideal animal model for investigating sheep's fecundity. In this study, selective signal analysis was performed on public whole-genome sequencing data from 60 sheep across eight breeds to identify candidate genes related to litter size. Results revealed that a total of 34,065,017 single-nucleotide polymorphisms (SNPs) were identified from all sheep, and 65 candidate genes (CDGs) were pinpointed from the top 1% of interacted windows and SNPs between the pairwise fixation index (FST, >0.149543) and cross-population extended haplotype homozygosity (XP-EHH, >0.701551). A total of 41 CDGs (e.g. VRTN, EYA2 and MCPH1) were annotated to 576 GO terms, of which seven terms were directly linked to follicular and embryonic development (e.g. TBXT, BMPR1B, and BMP2). In addition, 73 KEGG pathways were enriched by 21 CDGs (e.g. ENTPD5, ABCD4 and RXFP2), mainly related to Hippo (TCF4, BMPR1B and BMP2), TGF-β (BMPR1B and BMP2), PI3K-Akt (ITGB4, IL4R and PPP2R5A) and Jak-STAT signalling pathways (IL20RA and IL4R). Notably, a series of CDGs was under strong selection in sheep with high litter size traits. These findings result could improve the comprehension of the genetic underpinnings of sheep litter size. Furthermore, it provides valuable CDGS for future molecular breeding.

4D label-free quantitative proteomic analysis identifies CRABP1 as a novel candidate gene for litter size in rabbits†.

In commercial rabbit breeding, litter size is a crucial reproductive trait. This trait directly determines the reproductive ability of female rabbits and is crucial for evaluating the production efficiency. We here compared differentially expressed proteins of in the ovary tissue from New Zealand female rabbits with high (H) and low (L) litter sizes by using 4D label-free quantitative proteomic technology and identified 92 differential proteins. The biological functions of these proteins were revealed through gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses. Most distributions of GO and KEGG were related to reproduction, growth development, and metabolism. Furthermore, a novel candidate gene cellular retinoic acid binding protein-1 (CRABP1), which was highly expressed in the L group, was selected for further biological function verification. The Cell Counting Kit-8 (CCK-8) assay and flow cytometry analysis revealed that CRABP1 can promote granulosa cell (GC) apoptosis and inhibit GC proliferation. Furthermore, qRT-PCR and western blotting analysis revealed that CRABP1 regulates the genes (HSD17B1, Wnt-10b, FSHR, TAF4B, BMP15, and BMP6) and protein (Wnt-10b) associated with steroid hormone synthesis and follicle development. The PCR product direct sequencing method revealed single nucleotide polymorphisms in the core promoter region of CRABP1. Luciferase activity assays revealed that the transcriptional activity of the GG genotype was significantly higher than that of the TT or TG genotype. Different genotypes are accompanied by changes in transcription factors, which indicates that T-359G polymorphism can regulate CRABP1 expression. In general, we identified litter size-related genes and revealed the mechanism underlying the effect of CRABP1 on litter size. CRABP1 serves as a key factor in the reproductive capacity of rabbits and can act as a molecular biomarker for the breeding of New Zealand rabbits.

Multi-omics analysis reveals the dominant intestinal microbial strains and metabolites related to the reproductive performance in pregnant sows

Abstract Gut microbiome changed dramatically during pregnancy and played important roles in metabolic status and reproductive endocrinology in mammals. However, investigating the functional microbiota and metabolites to improve the reproductive performance and understanding the host–microbiota interaction are still arduous tasks. This study aims to reveal the dominant strains and metabolites that improve the reproductive performance. We analyzed the fecal microbiota composition and metabolic status of higher yield Chinese pig breed Meishan (MS) sows and lower yield but widespread raised hybrid pig breed Landrace × Yorkshire (L × Y) sows on days 28 and 100 of gestation. Results showed that MS sows had higher litter sizes and steroid hormone level but lower short-chain fatty acid level in feces. Fecal metabolomic analysis revealed that MS sows showed a different metabolic status compared with L × Y sows both at early and late pregnancy, which enriched with phenylpropanoid biosynthesis, bile secretion, steroid hormone biosynthesis, and plant secondary metabolite biosynthesis. In addition, 16S rDNA and internal transcribed spacer sequencing indicated that MS sows showed different structures of microbiota community and exhibited an increased bacterial α-diversity but non-differential fungal α-diversity than L × Y sows. Moreover, we found that the litter sizes and bacteria including Sphaerochaeta, Solibacillus, Oscillospira, Escherichia–Shigella, Prevotellaceae_UCG-001, dgA-11_gut_group, and Bacteroides, as well as fungi including Penicillium, Fusarium, Microascus, Elutherascus, and Heydenia both have positive association to the significant metabolites at the early pregnancy. Our findings revealed significant correlation between reproductive performance and gut microbiome and provided microbial and metabolic perspective to improve litter sizes and steroid hormones of sows.

Whole-genome sequencing identified candidate genes associated with high and low litter size in Chuanzhong black goats.

The reproductive performance of goats significantly influences breeding efficiency and economic returns, with litter size serving as a comprehensive indicator. Despite this, research on the genetic control of litter size remains limited. Therefore, we aimed to explore the candidate genes affecting fecundity and compared the whole-genome sequences (WGS) of 15 high-litter (HL) and 15 low-litter (LL) size in Chuanzhong black goats. Then genetic diversity and genomic variation patterns were analyzed by phylogenetic, principal component and population genetic structure analysis, it was found that HL and LL subpopulations diverged. Population evolutionary selection elimination analysis was performed by Fst and θπ resulted in 506 genes were annotated in HL and 528 genes in LL. These genes were mainly related to Hippo signaling pathway, G protein-coupled signaling pathway, G protein-coupled receptor activity, cell surface receptor signaling pathway, gonadal and reproductive structure development. According to the significantly selected genomic regions and important pathways, we found that the g.89172108T > G variant locus in the exon of the AMH gene was significantly associated with litter size (P < 0.05), which could be used as an auxiliary selection gene for the high fertility of Chuanzhong black Goat.

A Survey of the Current Farming Practices and Perceptions on Adopting Orphan Lambs in the United Kingdom: How Do “Ewe” Do It?

Fostering orphan lambs is common in the United Kingdom and therefore it is important to understand more about these practices to support sustainable sheep farming. Data were collected on current approaches to adopting lambs and the perceived success of these methods using an online survey. Of the 543 responses, 93.7% reported that they attempt to foster lambs with the most common reasons reported as high litter size and ewes with little to no milk production. Although respondents reported that the best method was wet, non-tethering techniques, the most commonly used methods were tethered (restraint of the ewe) followed by untethered (birth fluids and skins from dead lambs). Other techniques included disguising the smell of the lamb. There was a significant association between increased flock size and using tethered methods as well as increased numbers of methods used and orphan lambs (p ≤ 0.001). However, larger flocks were also associated with decreased lamb survival rates (p ≤ 0.001). Time and patience were mentioned as important tips for fostering and could be a factor in which method is chosen. Research on the impacts of these methods is warranted as some may be stressful, affecting long-term flock performance, survival, welfare and health.

Growth, survival rate of New Zealand White, Dutch Rabbit and their crosses

Abstract. The aim of the study was to assess survival rate of crossbred New Zealand White and Dutch rabbit breed. A total of 16 mature rabbits of seven to nine months old, New Zealand White and Dutch were used for the study. Data obtained were subjected to analysis of variance ANOVA using SAS. The reproductive traits studied were litter size, litter birth weight, mean kit weight. The growth traits were: body weight, body length, ear length, chest circumference, hind limbs, thigh length, nose to shoulder and thigh circumference. The reproductive traits were significantly (P&lt;0.05) affected by genetic group Pure and crosses. New Zealand White observed high litter size and litter birth weight at first, seventh, 14th and 21st day. Purebred Dutch had significant (P&lt;0.05) high values for growth traits. The body weight 478.73±18.10, body length 33.12±0.42, ear length 9.10±0.09, chest circumference 18.24±0.45 and hind limbs 19.51±0.33 were significantly (P&lt;0.05) high in crosses of Dutch x New Zealand White. Pre-weaning mortality and survival rate at weaning were 22.22% and 77.77% high in New Zealand White; 14.28% and 85.71% in Dutch and DUC x NZW; and 9.09% and 90.90% in NZW x DUC. In conclusion, New Zealand White x Dutch crosses demonstrated high survival rate and low pre-weaning mortality.

EFFICIENCY OF USING MALES OF DIFFERENT GENOTYPES AS PARENTAL FORM OF THE CROSS

Introduction. Rabbit meat production can be an important element in solving the problem of lack of dietary protein for the growing human population all over the world, especially in developing countries. Compared to other types of animals, the advantage of rabbits is that rabbit meat has a high protein content and low fat and cholesterol content, has excellent taste qualities, and is a product of healthy and dietary nutrition.&#x0D; Using crossbreeding increase the productivity of rabbits due to the effect of heterosis. However, taking into account the fact that the modern technology of industrial rabbit breeding involves the use of rabbits of various crosses, which are imported into our country, there is a need to investigate the possibility of using males of different genotypes as the parent form of the cross and their influence on the reproductive characteristics of female rabbits. Thus, the purpose of the study was to study the selection characteristics of males of different genotypes and the effectiveness of their use as parental forms of the cross.&#x0D; Materials and methods of research. The research was carried out in the conditions of "Krolikoff Farm" LLC, which is located in the Uman district of the Cherkasy region, during 2022. The research was conducted using males of four genotypes: males of the parent form of the Hyla – Hyla Max cross (HM, n = 15), males of the parent form of the Hyplus PS59 cross (PS59, n = 15), males of the Termon white breed (TB, n = 12), males of the Poltava silver breed (PS, n = 9). Males were used on female rabbits of the maternal form of the Hyla – Hyla NG cross, from which 4 groups were formed, depending on the genotype of the breeder, with the sperm of which the female rabbits were inseminated. Females of group I were inseminated with sperm of Hyla Max males, group II – Hyplus PS59, group III – Termon white breed, group IV – Poltava silver breed. The females of the experimental groups were similar in age, live weight, and number of hatchlings.&#x0D; Research results. Analyzing the results of research on the productivity characteristics of males of different genotypes, it was established that males of the Hyplus PS59 parental form had the highest live weight, it was 0.41 kg more (p ≤ 0.001) than males of the Hyla – Hyla Max parental form. The live weight of the males of the Termon white breed was 14% lower (p ≤ 0.001), and that of the males of the Poltava silver breed was 18% lower (p ≤ 0.001) than that of the Hyla Max males. This fact can be explained by the implementation of directed selection work with males of the original lines of crosses based on live weight indicators.&#x0D; Hyla Max males had the highest ejaculate volume values. However, it should be noted that the males of the Thermon white breed were slightly inferior to the males of the parent form of the Hyla cross in terms of this indicator. Males of the Poltava silver breed had the lowest value of ejaculate volume.&#x0D; As a result of the research, it was established that female rabbits inseminated with the sperm of Hyla Max males had the highest litter size. Rabbit does inseminated with PS59 males had 5.6% lower fertility than female rabbits inseminated with Hyla Max males, and rabbits inseminated with Termon White males had a 6.9% lower fertility rate. The highest value of high fertility was recorded in female rabbits inseminated with the sperm of PS59 males. There was no significant difference between the high fertility of female rabbits on which Hyla Max males and Termon white males were used. Female rabbits inseminated with males of the Poltava silver breed had the lowest fertility.&#x0D; Conclusions. According to the results of the conducted research, it can be stated that the most effective as a parent form of the cross is the use of Hyla Max males, however, the use of males of the Termon white breed of rabbits as a parent form of the cross is expedient due to the high cost of imported cross males. At the same time, the productivity of female rabbits remains at a high level, and according to some signs, female rabbits on which cross males were used prevail.

Mortality and milk yield of Burgundy Fawn, Flemish Giant and New Zealand White Rabbits and their Crosses

The aim of the study was to determine the effect of genotype on the rearing indices and milk yield of Burgundy Fawn (BF), Flemish Giant (FG) and New Zealand White (NZW) rabbits and their crosses. The experiment was performed according to the breeding program: FG FG = FG; NZW NZW = NZW; BF BF = BF, NZW FG = NZWFG; BF FG = BFFG; NZW BF = NZWBF. Litter size and litter weight were recorded from birth to weaning on the 35th day of life. The size of litter at birth was largest for purebred BF rabbits (9.20 kits), there were no significant differences in the size of the litter. The coefficient of milk yield of females remained on similar level for all genetic groups, and it ranged between 3.5 for purebred NZW females and 3.76 for the BF females crossed with Flemish Giant males. Rearing effectiveness was lowest for litters of purebred FG rabbits (79.12%), and highest for litters of BF females crossed with FG males (96.00%), however there were no significant differences between the groups. It was found that crossing of BF or NZW females with FG males results in a great effectiveness of rearing and high litter size, no significantly different from typical broiler breeds therefore, such crossing could be recommended for the production of rabbits.

Whole-genome DNA methylation profiling reveals epigenetic signatures in developing muscle in Tan and Hu sheep and their offspring.

The Tan sheep is a popular local breed in China because of its tenderness and flavor. The Hu sheep breed is also famous for its high litter size, and its muscle growth rate is faster than that of Tan sheep. However, the epigenetic mechanism behind these muscle-related phenotypes is unknown. In this study, the longissimus dorsi tissue from 18 6 month-old Tan sheep, Hu sheep, and Tan-Hu F2 generation (6 sheep per population) were collected. After genomic DNA extraction, whole-genome bisulfite sequencing (WGBS) and bioinformatics analysis were performed to construct genome-wide DNA methylome maps for the Tan sheep, Hu sheep and their Tan-Hu F2 generation. Distinct genome-wide DNA methylation patterns were observed between Tan sheep and Hu sheep. Moreover, DNA methylated regions were significantly increased in the skeletal muscle from Tan sheep vs. the F2 generation compared to the Hu sheep vs. F2 generation and the Tan sheep vs. Hu sheep. Compared with Hu sheep, the methylation levels of actin alpha 1 (ACTA1), myosin heavy chain 11 (MYH11), Wiskott-Aldrich syndrome protein (WAS), vav guanine nucleotide exchange factor 1 (VAV1), fibronectin 1 (FN1) and Rho-associated protein kinase 2 (ROCK2) genes were markedly distinct in the Tan sheep. Furthermore, Gene Ontology analysis indicated that these genes were involved in myotube differentiation, myotube cell development, smooth muscle cell differentiation and striated muscle cell differentiation. The findings from this study, in addition to data from previous research, demonstrated that the ACTA1, MYH11, WAS, VAV1, FN1, and ROCK2 genes may exert regulatory effects on muscle development.

Embryo survival and fertility differ in lines divergently selected for birth weight homogeneity in mice.

The selection of animals for lower environment sensitivity around the optimum trait value can also provide benefits in productivity and welfare. A divergent selection experiment for birth weight environmental variability in mice was successfully conducted over 17 generations. Animals from low variability selected line (L-line) were more robust by having a higher litter size and survival at weaning in a common breeding environment, than those from high variability line (H-line). The objective of this study was to analyze the differences between those divergently selected lines for embryo and fetal survival and for fertility and prolificacy rate. To study embryo survival and ovulation rate, a total of 98 females (34 H-line and 50 L-line) were studied in four generations of the divergent experiment. To analyze fetal survival and fertility rate, 378 female mice (138 H-line and 240 L-line) in 10 generations or the divergent experiment were studied. Ultrasound scans were performed at day 14 of gestation to establish the number of total fetal and the embryo absorptions. Mortality was addressed as the difference between litter size at birth and the number of fetuses at 14 days of gestation. The number of pregnant females in the first 3 days after mating was used to measure fertility. A linear model was also fitted to analyze embryo mortality, litter size, and the number of embryos at 14 days of gestation. A categorical model was then used to study fertility, including line, generation, and its interaction as effects. Despite the fact that there were no significant differences in the ovulation rate, litter size at birth was significantly higher in the L-line than in the H-line (9.82 vs. 8.36 pups, p < 0.001). Moreover, embryo mortality was significantly lower in the L-line than in the H-line (1.39 vs. 2.87 fetuses, p < 0.001). L-line females were more fertile (53.49% vs. 23.26% for the H-line). According to these results, the line selected for low environmental variance would be preferable for robustness and animal welfare.

Performance of crossbred pigs with indigenous and Hampshire inheritance under a smallholder production system in the Eastern Himalayan hill region.

Pig productivity is very low in the Eastern Himalayan hill region due to the poor performance of local pigs. To improve pig productivity, it was decided to develop a crossbred pig of Niang Megha indigenous and Hampshire as an exotic germplasm. The performance of crossbred pigs with different levels of Hampshire and indigenous inheritance-H-50 × NM-50 (HN-50), H-75 × NM-25 (HN-75), and H-87.5 × NM-12.5 (HN-87.5)-was compared for their performance to find a suitable level of genetic inheritance. Among the crossbreds, HN-75 performed better in terms of production, reproduction performance, and adaptability. Inter se mating and selection were carried out on six generations of HN-75 pigs, and genetic gain and trait stability were evaluated and released as a crossbred. These crossbred pigs attained body weights of 77.5-90.7kg by 10months of age, with FCR of 4.3:1. Age at puberty was 276.66 ± 2.25days, and average birth weight was 0.92 ± 0.06kg. Litter size at birth and weaning were 9.12 ± 0.55 and 8.52 ± 0.81. These pigs have good mothering abilities with a weaning percentage of 89.32 ± 2.52%, good carcass quality, and consumer preference. The lifetime productivity for an average of six farrowings/sow showed a total litter size at birth of 51.83 ± 1.61 and total litter size at weaning of 47.17 ± 2.69. In a smallholder production system, the crossbred pigs showed a better growth rate and a higher litter size at birth and at weaning than average local pigs. Hence, the popularization of this crossbreed would enhance the production, productivity, livelihood, and income of the region's farmers.

Prolific Avishaan Sheep Toward Doubling the Farmer Income: A Review

The main objective of the study is to increase the meat production by rearing of Avishaan sheep. Avishaan sheep is a prolific sheep which is developed through crossing of three indigenous sheep breed (Garole, Malpura and Patanwadi). Avishaan sheep produce more number of lambs due to presence of FecB gene, inherited from microsheep Garole of West Bengal state of India. Avishaan sheep has better reproductive efficiency and litter size as compared to non-prolific Indian sheep breeds. Avishaan sheep has higher litter size, more litter weight and sufficient milk for their neonates. Therefore, it will be boon for farmers toward doubling the income by selling additional lambs received due to prolificacy trait inheritance. At commercial level, under intensive system, Avishaan sheep farming is most suitable for maximum profit. In future, due to declining natural resources, Avishaan sheep will fulfill the increasing meat demand of the nation.

Litter size influences rumen microbiota and fermentation efficiency, thus determining host early growth in goats.

Multiple litters are accompanied by low birth weight, low survival rates, and growth rates in goats during early life. Regulating rumen microbiota structure can indirectly or directly affect host metabolism and animal growth. However, the relationship between high litter size and rumen microbiome, rumen fermentation, and growth performance in goat kids is unclear. In the present study, thirty 6-month-old, female goats were investigated, of which 10 goats were randomly chosen from single, twin and triplet goats respectively, and their birth weight was recorded. From birth, all goats were subjected to the same feed and management practices. Individual weaning and youth body weight were measured, and the rumen fluid samples were collected to characterize the bacterial communities and to determine the ruminal volatile fatty acids (VFA), free amino acids (AA), and free fatty acids (FA) concentration of those young goats. Compared with the single and twin goats, triplet goats have lower weaning and youth body weight and average daily gain (ADG). Ruminal propionate, butyrate, and total VFA were decreased in triplet goats. Meanwhile, ruminal AA, such as branched chain amino acids (BCAA), essential amino acids (EAA), unsaturated fatty acids (UFA), and monounsaturated fatty acids (MUFA) were decreased, while saturated fatty acids (SFA) and odd and branched chain fatty acids (OBCFA) were increased in triplet goats. Our results also revealed that litter size significantly affected the rumen bacterial communities, and triplet goats had a lower the Firmicutes: Bacteroidota ratio, the abundance of Firmicutes phylum, Rikenellaceae family, and Rikenellaceae RC9 gut group, and had a higher proportion of Prevotellaceae family, and several genera of Prevotellaceae, such as Prevotella, and unclassified f Prevotellaceae. Furthermore, Spearman's correlation network analysis showed that the changes in the rumen bacteria were associated with changes in rumen metabolites. In conclusion, this study revealed that high litter size could bring disturbances to the microbial communities and decrease the rumen fermentation efficiency and growth performance, which can be utilized to better understand variation in microbial ecology that will improve growth performance in triplet goats.

Identification of Candidate Salivary, Urinary and Serum Metabolic Biomarkers for High Litter Size Potential in Sows (Sus scrofa).

The selection of sows that are reproductively fit and produce large litters of piglets is imperative for success in the pork industry. Currently, low heritability of reproductive and litter-related traits and unfavourable genetic correlations are slowing the improvement of pig selection efficiency. The integration of biomarkers as a supplement or alternative to the use of genetic markers may permit the optimization and increase of selection protocol efficiency. Metabolite biomarkers are an advantageous class of biomarkers that can facilitate the identification of cellular processes implicated in reproductive condition. Metabolism and metabolic biomarkers have been previously implicated in studies of female mammalian fertility, however a systematic analysis across multiple biofluids in infertile and high reproductive potential phenotypes has not been explored. In the current study, the serum, urinary and salivary metabolomes of infertile (INF) sows and high reproductive potential (HRP) sows with a live litter size ≥ 13 piglets were examined using LC-MS/MS techniques, and a data pipeline was used to highlight possible metabolite reproductive biomarkers discriminating the reproductive groups. The metabolomes of HRP and INF sows were distinct, including significant alterations in amino acid, fatty acid, membrane lipid and steroid hormone metabolism. Carnitines and fatty acid related metabolites were most discriminatory in separating and classifying the HRP and INF sows based on their biofluid metabolome. It appears that urine is a superior biofluid than saliva and serum for potentially predicting the reproductive potential level of a given female pig based on the performance of the resultant biomarker models. This study lays the groundwork for improving gilt and sow selection protocols using metabolomics as a tool for the prediction of reproductive potential.

Bio-economic modelling of sheep meat production systems with varying flock litter size using field data

Sheep meat producers derive the majority of income from sales of weaned lambs, determined by flock conception rates, litter size, and lamb survival. Field data from commercial flocks can inform sensitivity analyses of the effect of litter size on flock productivity, feed demand, and gross margin. This study adapted an established bio-economic model of a flock of breeding ewes informed by statistical relationships (from linear models) between flock litter size (lambs born per ewe lambing) and production factors (such as flock barren rate, litter birth type and lamb birth weight) identified using 156 145 animal records from the Irish national sheep breeding database. Sensitivity analyses were undertaken to investigate the effects of flock litter size on flock production, feed demand, and gross margin. Results showed that as flock litter size increased, the proportion of lambs born as multiples increased, with 14 % of lambs born as singles when flock litter size was 2.2 lambs born per ewe lambing. Flock gross margin increased from €2 205 to €7 730 as litter size increased from 1.0 to 2.0 lambs born per ewe lambing. As litter size increased from 1.0 to 2.2 lambs born per ewe lambing, flock gross margin increased linearly by, on average, €52 per 0.01 increase in litter size. At a litter size of > 2.2 lambs born per ewe lambing, flock gross margin increased on average €12 per 0.01 increase in litter size. At a litter size of 2.2 lambs born per ewe lambing, flock efficiency (at 65.0 kg of lamb weaned per ewe presented for breeding), weaning rate (at 1.5 lambs weaned per ewe presented for breeding; not including excess lambs from large litters sold within a week after birth and thus not weaned on-farm), and gross margin (at €8 500) began to plateau. The results indicate lower marginal returns in gross margin at very high flock litter size, due to the lower value of additional lambs born as triplets and quadruplets compared with single- and twin-born lambs. However, the diminishing economic returns occurred at higher flock litter size than are currently biologically achieved in most flocks. Quantification from this analysis demonstrates how the value of increasing the number of lambs born changes at very high flock litter size, which can inform the priorities and performance benchmarking for international sheep meat production industries.

A Novel SNPs of KISS1 Gene Strongly Associated with Litter Size in Indonesian Goat Breeds

Kisspeptin is a protein encoded by the KISS1 gene which behaves as a key role by stimulating gonadotropin releasing hormone (GnRH) neuron activity directly in the reproductive axis. The objective of the present study was to determine the genetic diversity within intron 1 of KISS1 gene and to verify their association with fecundity traits which can be devoted as a marker assisted selection (MAS) for breeding selection. This study was established on three Indonesian native goat populations (Kacang, Kejobong, and Senduro). The PCR products were then sequenced in both directions. The DNA sequencing alignment resulted fifteen variants (one indel and fourteen SNPs), with SNP1, SNP2, SNP3, and SNP9 being novel single nucleotide polymorphisms (SNPs) of KISS1 gene intron 1. Genotype, haplotype, and parity were significantly associated with litter size. SNP8, SNP9, and SNP10 were correlated with overall means of litter size (LS) and LS at the first and the third parities (p<0.05). Additionally, novel SNP9 were in remarkably strong linkage disequilibrium with SNP8 and SNP10 (D’=1.00; r≥0.58; χ2≥13.38), and allele A had putative binding sites for the NFIC which plays an important role in activating the expression of KISS1 gene. The H2 haplotype (CATAGCGCAACGCT) was found to have the highest litter size (p<0.0001). CC genotype at SNP8, AA genotype at novel SNP9, GA genotype at SNP10, and H2 haplotype were the excellent genotypes and haplotype that associated with the superior LS (p<0.05). Therefore, this result led to presume that these three SNPs and H2 haplotype can be acknowledged as prominent genetic markers for goat- breeding selection.

Reproductive Performance of Kacang Goats in Closed Population Areas of Sidoarjo Regency, East Java, Indonesia

The objective of this study was to determine the reproductive performance of Kacang goats in a closed population area of Oro-Oro Farm located in Sawohan Village, Buduran Subdistrict, Sidoarjo Regency. We used 146 Kacang goat with a range of parity from 1 to &gt; 7. Data analysis was carried out using the ANOVA test, Least Significant Difference (LSD) test, coefficient of variation test and descriptive test to measure litter size, pre-weaning mortality, kidding interval (KI), days open (DO) and Kacang goat reproduction index. The results showed that the highest litter size was 1.69 ± 0.63 at parity 6, the lowest pre-weaning mortality at parity &gt; 7 was 11.76%, the shortest kidding interval and days open was at parity 4 for 7.35 ± 1.22 and 2.35 ± 1.22 months, respectively. The best Kacang goat reproduction index was 2.22 at parity 6 with coefficient of variation of 38.06%, 41.08% and 13.36% for litter size (LS), days open (DO), kidding interval (KI). Conclusively, there was a diverse reproductive performance of Kacang goats in the closed population area of Oro-Oro Farm located in Sawohan Village, Buduran Subdistrict, Sidoarjo Regency based on parity 1 to &gt; 7, in which the higher the parity, the higher the reproductive performance. However, parity 5 onwards saw a declining reproductive performance due to weakened livestock conditions.

Validation of maternal and terminal sheep breeding objectives using Irish field data.

Genetic evaluations provide producers with a tool to aid in breeding decisions and highlight the increase in performance achievable at the farm level through genetic gain. Despite this, large-scale validation of sheep breeding objectives using field data is lacking in the scientific literature. The objective of the present study was to evaluate the phenotypic differences for a range of economically important traits for animals divergent in genetic merit for the Irish national maternal and terminal sheep breeding objectives. A dataset of 17,356 crossbred ewes and 54,322 progeny differing in their maternal and terminal breeding index recorded in 139 commercial flocks was available. The association of the maternal index of the ewe or terminal index of the ram and a range of phenotypic performance traits, including lambing, lamb performance, ewe performance, and health traits, were undertaken. Ewes excelling on the maternal index had higher litter sizes and produced progeny with greater perinatal lamb survival, heavier live weights from birth to postweaning and reduced days to slaughter (P < 0.05). Ewe maternal index had no quantifiable impact on lambing ease, carcass conformation, or fat, the health status of the ewe or lamb, ewe barren rate, or ewe live weight. Lambs born to rams of superior terminal index produced heavier lambs from preweaning onwards, with a reduced day to slaughter (P < 0.05). Lambing traits, lamb health, and carcass characteristics of the progeny did not differ between sires stratified as low or high on the terminal index (P > 0.05). Results from this study highlight that selecting either ewes or rams of superior maternal or terminal attributes will result in an improvement on pertinent performance traits of the national sheep flock, resulting in greater flock productivity and profitability.