High-resolution Orbitrap Mass Spectrometer Research Articles

Vacuum ultraviolet laser dissociation and proteomic analysis of halogenated peptides

Chemical modifications are widely used in research fields such as quantitative proteomics and interaction analyses. Chemical-modification targets can be roughly divided into four categories, including those that integrate isotope labels for quantification purposes, probe the structures of proteins through covalent labeling or cross-linking, incorporate labels to improve the ionization or dissociation of characteristic peptides in complex mixtures, and affinity-enrich various poorly abundant protein translational modifications (PTMs). A chemical modification reaction needs to be simple and efficient for use in proteomics analysis, and should be performed without any complicated process for preparing the labeling reagent. High reaction specificity, which reduces product complexity, and mild biocompatible reaction conditions are also favored. In addition, modification labels should be compatible with mass spectrometry to prevent interference from ionization and dissociation processes. Pulsed ultraviolet (UV) lasers can produce large amounts of active radical species within a few nanoseconds for use in rapid photochemical-modification processes. Usually, UV lasers with wavelengths greater than 240 nm are used in current in-situ photochemical-modification methods; consequently, special conjugated photoreaction probes need to be designed and oxidants and catalysts added, which reduce the biocompatibility of the reaction. The high single-photon energy of the 193 nm laser is capable of efficiently exciting conventional photo-inert substances in aqueous solution, leading to efficient photochemical peptide modifications. In this study, we developed a new method for photochemically brominating and iodinating enzymatic protein samples extracted from complex tissue with a 193 nm ArF nanosecond pulsed laser, which efficiently brominated tyrosine, histidine, and tryptophan, and iodinated tyrosine and histidine. Tandem mass spectrometry (MS/MS) can generate fragmentation patterns of ions which can afford diagnostic molecular fingerprints to decipher sequences of biopolymers such as peptides. Peptide fragmentation is commonly implemented using collision-based, electron-based, or photodissociation-based methods. Compared with the most commonly used collision-based methods, ultraviolet photodissociation (UVPD) uses high-energy ultraviolet photons with wavelengths shorter than 200 nm to excite and dissociate ions. Single-pulse excitation can provide the energy required to promote ions into their excited electronic states, with excitation speeds of up to several nanoseconds. Since dissociation may occur directly from the excited states, UVPD spectra can show a wide variety of fragmentation pathways, thereby providing more sequence and structural information. The most commonly used wavelengths are 157, 193, and 266 nm. UVPD has been integrated into high-resolution orbitrap mass spectrometer by adding optical windows and other optics to direct the photons to the analyte ions, and by implementing a triggering method that synchronizes the photoirradiation process with ion-analysis events. The large photoabsorption cross sections of peptides at 193 nm and the resulting high internal energy deposition can generate abundant fragment ions and achieve high sequence coverage. The excellent fragmentation performance offered by 193 nm UVPD of peptides with its high sequence coverage and lack of charge-state dependence, has motivated its use in high-throughput proteomics. Photochemically brominated and iodinated mouse-liver tryptic peptides were further characterized by 193 nm UVPD tandem mass spectrometry with the aim of analyzing their sequences, modification sites, and photodissociation mechanisms. Br and I atoms strongly absorb 193 nm photons; consequently, UVPD can cleave C-Br/C-I bonds at halogenated sites to generate peptide radical ions, with further peptide-backbone fragmentation caused by radical migration. In addition, the combination of 193 nm UVPD with conventional high-energy collision-induced dissociation (HCD) mode improves the identification-reliability of halogenation sites in proteomics. Therefore, integrating photochemical halogenation and 193 nm UVPD can trigger novel radical-dissociation pathways, thereby improving analytical proteomics performance.

Molecular interaction between ammonium sulfate and secondary organic aerosol from styrene

Secondary organic aerosol (SOA) and inorganic aerosol (SIA) are two major constituents of PM2.5, which are well-studied separately. However, the molecular-level investigation of mechanical interactions between them is still limited, which will affect the understanding of toxicity and optical properties of PM2.5. Styrene contains a benzene ring and a highly reactive double bond, mainly contributing to urban SOA formation. Here, chamber experiments were conducted to explore the effects of the (NH4)2SO4 seeds, as an example of SIA, on styrene SOA formation under varying relative humidity (RH) conditions. The particle-phase products were determined based on a high-resolution orbitrap mass spectrometer. The results showed that in the styrene-H2O2-hv systems, (NH4)2SO4 seeds facilitated the gas-particle partitioning of SOA precursors, leading to slightly higher SOA yields than the unseeded systems at 8.5 % RH. While RH exceeded 44.3 %, the presence of (NH4)2SO4 seeds increased the particle liquid water content, thus enhancing the partitioning of hydrophilic H2O2 to particle phase and the further oxidation of SOA, finally decreasing SOA yields. In the styrene-NOx-hv systems, NH4+ and SO42− were involved in the particle-phase reactions, producing prominent nitrogen- and sulfur-containing compounds of C8H7O2N and C8H9O6NS. In the styrene-O3 dark reaction systems, the existence of (NH4)2SO4 seeds significantly changed the oligomer components under humid conditions. The particle-phase formation pathways of oligomers affected by (NH4)2SO4 seeds were also illustrated based on tandem mass spectra data. This study emphasizes the importance of inorganic seed effects on particle-phase reactions and improves our understanding of the SOA formation pathways in the ambient atmosphere.

Comparative Metabolomics of Ligulate and Tubular Flowers of Two Cultivars of Calendula officinalis L.

Calendula officinalis L. is a well-known plant widely used in traditional medicine due to the presence of various biologically active compounds. The main raw material for the production of medicinal preparations is the inflorescence, which consists of ligulate and tubular flowers. However, the characteristics of the metabolome of these flowers are not fully understood. This study identified and compared the levels of major metabolites in the ligulate and tubular flowers of two C. officinalis cultivars, 'Golden Sea' (GS) and 'Paradise Garden' (PG). The metabolome was analysed using ultra-performance liquid chromatography with photodiode array detection and a Q Exactive Orbitrap high-resolution mass spectrometer. It was found that the tubular flowers of both PG and GS cultivars had higher levels of lipids, phenolamides and caffeoylquinic acids and lower levels of triterpenoid glycosides than the ligulate flowers. It was also shown that the inflorescences of the GS, which had a 35% higher proportion of tubular flowers, contained 30% more phenolic compounds and 50% more lipids than the PG. Thus, the results obtained extend our understanding of the features in the metabolomes of ligulate and tubular flowers and suggest that the quality of inflorescences of C. officinalis cultivars, as a source of medicinal preparations, is strongly influenced by the proportion of ligulate and tubular flowers.

Characteristics of dissolved organic matter during the cyanobacterial degradation in Chaohu Lake, China.

The actual DOM in Chaohu Lake was used to feed cyanobacterial to explore the changes of microbial communities, fluorescence spectral characteristics and molecular composition of DOM during the degradation of cyanobacteria. It is found that cyanobacterial grow periodically depending on the concentration of nutrients with the decreasing concentration of nutrient salts. Both Bacteroidetes and Actinobacteria have strong correlation with algae growth. Bacteroidetes has a positive correlation with algae growth, relationship on the contrary, Actinobacteria has a negative relationship. The humus-like components in the four groups are similar, but the protein-like component (C3) shows periodic changes with the life process of cyanobacteria. The average molecular weight of each sample detected by Orbitrap high-resolution mass spectrometer increases slightly and the DOM increase aromaticity in the end. In this study, the molecule of Carboxyl-Rich Alicyclic Molecules (CRAM) is difficult to be done by photodegradation and biodegradation in the early periods, but some molecules of CRAM are selectively degraded by microorganisms in the final period. The growth of cyanobacterial lead to increasing the concentration of protein-like and carbohydrate-like molecule of DOM in the water. In the final stage, the molecule group of CHO disappear significantly and the molecule group of heteroatomic group increase.

A targeted and non-targeted discovery screening approach for poly-and per-fluoroalkyl substances in model environmental biota samples

A comprehensive analytical approach for targeted and non-targeted discovery screening of per- and polyfluoroalkyl substances (PFAS) was developed and applied to model complex environmental biotic samples. Samples were extracted by formic acid-acetonitrile solution and cleaned up and fractionated by SPE (WAX). Target PFAS quantification was performed by ultra-high performance liquid chromatography interfaced with a triple quadrupole mass spectrometer (UPLC-QqQ-MS/MS). Non-targeted analysis (NTA) PFAS screening was performed with UPLC coupled with a quadrupole-Exactive orbitrap high resolution mass spectrometer (UPLC-Q-Exactive-HRMS). An iterative exclusion (IE) approach was applied to data acquisition for NTA suspect screening to increase the potential for unknown PFAS discovery with MS/MS. A complex workflow in Compound Discoverer was set up to automate data processing of the PFAS suspects search. New mass lists and MS/MS databases, which included a large number of PFAS, were set up and introduced into the search for high-throughput structure identification using HRMS techniques. The integrated targeted-NTA method successfully analyzed for legacy and alternative PFAS in model environmental biota samples, namely polar bear liver and bird egg samples. Targeted analysis provided unequivocal identification of well known/established PFAS (mainly perfluoroalkyl acids) with quantification at very low levels. The NTA suspect screening was able to determine a broader range of PFAS. The data analysis method offered high-confidence annotations for PFAS despite lacking available authentic standards. Overall, the analytical coverage of PFAS was greater and elucidated other PFAS present in these model apex predators.

Oligomer formation from cross-reaction of Criegee intermediates in the styrene-isoprene-O3 mixed system

Alkene ozonolysis can produce stabilized Criegee intermediates (SCIs), which play a key role in oligomers' formation. Though styrene and isoprene coexist in the ambient atmosphere as important anthropogenic and biogenic secondary organic aerosol (SOA) precursors, respectively, their cross-reactions have not received attention. This study investigated the interactions of SCIs from styrene and isoprene ozonolysis for the first time. The high-resolution Orbitrap mass spectrometer was used to determine the unique ion mass spectra of the isoprene-styrene-O3 mixture. The results show that the signal intensities of new ions account for >8.4% of total ions in the mass spectra of the styrene-isoprene-O3 mixed system. Styrene and isoprene ozonolysis can produce characteristic C7–SCI and C4–SCI, respectively. C7–SCI and C4–SCI can be involved in the cross-reactions, and the results of tandem mass spectra directly confirmed both C7–SCI and C4–SCI as chain units. The O/C and H/C ratios of cross-products are in the range of 0.38–1.07 and 1.00–1.50, respectively, which are consistent with cross-reaction products. Adding a C7–SCI unit reduces the oligomer's volatility by 1.3–1.4 orders of magnitude lower than adding a C4–SCI unit. Thus, C4–SCI can compete with C7–SCI to react with styrene-derived RO2/RC(O)OH to produce more volatile cross-products, while the less volatile cross-products can be formed when isoprene-derived RO2/RC(O)OH reacted with C7–SCI instead of C4–SCI. The SOA yield of the mixed system is lower than that of the single styrene-O3 system but higher than that of the single isoprene-O3 system. Ambient particles were also collected, and 5 possible SCI-related cross-products were identified. This study illustrates the effects of SCI-related cross-reactions on SOA components and physicochemical properties, providing a basis for future research on SCI-related cross-reactions that frequently occur in the ambient atmosphere.

Combining Orbitrap-HRMS acquisition modes and direct injection by a guard column for targeted analysis of underivatized amino acids in urine

Nowadays, there is a great interest in the development of rapid methods for the determination of compounds of clinical interest in biological samples, such as amino acids in urine samples. Mass spectrometry-based methods have been proposed with this objective, although the use of low resolution mass analyzers sometimes cannot provide accurate results. Orbitrap has barely been used with quantitative purposes for the targeted analysis of amino acids in urine although it has been used to a greater extent for non-targeted assays to identify potential biomarkers of different diseases.The use of a guard column for sample introduction into the Orbitrap was evaluated. The coupling of a hydrophilic interaction-guard column significantly improved the MS-signals by producing a matrix cleaning effect with a slight displacement of the target analytes. Possible isobaric interferences were studied and, consequently, different modes of MS data acquisition were tested: Full MS acquisition mode was selected for those analytes for which it was possible their determination by exact mass, and parallel reaction monitoring mode was used for those compounds showing isobaric interferences. Method validation was performed using synthetic urine. Limits of detection between 0.003 and 1.50 mg/L and limits of quantification between 0.10 and 4.95 mg/L were found with recoveries in the 80–130 % range. The runtime was 1.6 min and the total time between injection was less than 3 min. The optimized method was satisfactorily applied to the analysis of urine from healthy volunteers.This work describes for the first time the direct coupling of a hydrophilic interaction-guard column to a Orbitrap high resolution mass spectrometer (HRMS) for the development of a fully validated quantitative method for the determination of underivatized amino acids in urine. The method proposed here represents a high throughput and reliable approach, with an analysis runtime of 1.6 min, much less than the time required when chromatographic techniques were used.

Study of metabolism and potential toxicity of nine synthetic opioid analogs using the zebrafish larvae model.

The use of novel psychoactive substances (NPSs) has dramatically increased worldwide, and among them, synthetic opioids are one of the fastest growing groups, where cinnamylpiperazines and 2-benzylbenzimidazoles represent two of the most relevant subclasses. However, the data on their toxicity and metabolism are still limited. The aim of the present study was to evaluate the toxicity and metabolic pathways of some compounds belonging to these families, namely, AP-237, 2-methyl AP-237, isotonitazene, flunitazene, etodesnitazene, metonitazene, metodesnitazene, N-pyrrolidino etonitazene, and butonitazene. The study was performed using a zebrafish early life stages model. In fact, zebrafish (Danio rerio) embryos and larvae have recently been recognized as a suitable animal model in alternative to mammals, because they require less time and resources and do not need complex procedures for ethics approval. The cellular toxicity after a single administration was assessed at the fourth day post-fertilization with acridine orange staining. Possible morphological defects were evaluated with a light microscope after 24 h of exposure to 1μmol/L concentration of each drug. Subsequently, the larvae were euthanized and underwent analysis of drug metabolites using UPLC coupled to an Orbitrap high-resolution mass spectrometer. High rates of morphological defects, as well as of cellular death, were detected, but no significant difference in mortality between treatment and control groups was observed. In addition, several metabolites, mainly produced through monohydroxylation, N-dealkylation, and O-dealkylation, were identified in the larvae extracts.

Ultrasonic assisted activation of persulfate for the treatment of spent porous biochar: Degradation of adsorbed PFOA and adsorbent regeneration

In this work, the regeneration of spent biochar adsorbent and the degradation of adsorbed PFOA by the system of ultrasonic assisted activation of persulfate were explored. The effects of ultrasound, persulfate and biochar on PFOA removal were investigated through a series of regeneration and degradation experiments. Meanwhile, the degradation mechanism and reaction pathways of PFOA were investigated with electron paramagnetic resonance (EPR) and high-resolution quadrupole orbitrap mass spectrometer. The results showed that PFOA adsorbed by biochar could be degraded efficiently with the synergistic effect of ultrasound and persulfate. The degradation of PFOA in biochar could be finished in 4 h, while the defluorination took longer, with a defluorination efficiency of 50.6% after 4 h and 99.6% after 10 h. In this process, PFOA was degraded and defluorinated gradually by thermal decomposition caused by cavitation bubbles and degradation caused by the attack of SO4•ˉ and •OH. Two different free radicals controlled different degradation pathways, with SO4•ˉ playing a dominant role. In this system, the regeneration of the waste biochar adsorbent was achieved by eliminating PFOA, which could be recycled more than three times. The application potential of the system was evaluated using real water sample, and it was found that the removal of PFOA in real water sample was satisfactory even with the influence of inorganic ions and organic matter, indicating that it has promising application prospects. This work provided new insight into the degradation of adsorbed PFOA and adsorbent regeneration.

Fabrication of a magnetic metal-organic framework/covalent organic framework composite for simultaneous magnetic solid-phase extraction of seventeen trace quinolones residues in meats

Effective capture of quinolones (QNs) in animal-derived food is a vital procedure for food safety monitoring. However, the lack of adsorption specificity and difficult to recycle in complex substrate conditions have been major problems for most of the adsorbents. In this work, a magnetic Fe3O4/MOF/COF composite (named Fe3O4@NH2−MIL-125@TpPa-SO3H) was successfully synthesized with good magnetic responsiveness and conspicuous affinity towards QNs. The Fe3O4/MOF/COF composite was used as a magnetic solid-phase extraction (MSPE) adsorbent for pretreatment and determination of QNs in meat samples. Under optimal MSPE conditions in combination with high performance liquid chromatography-quadrupole orbitrap high resolution mass spectrometer (HPLC-Q-Orbitrap HRMS), the proposed method had good linearity (R2 ≥ 0.9978) from 0.01 to 100ng g−1, low limits of detection (0.0016 to 0.0940ng g−1), good precision with relative standard deviations lower than 5.8%. This method was effectively applied to the detection of 17 QNs in the spiked pork, chicken and beef samples with satisfactory recoveries from 83.9 to 106.2%. The separation selectivity mainly due to the π–π interaction, hydrogen bonding, and electrostatic attraction between QNs and the sulfonic acid and amino functional groups of the composite. After verification, the stability and reusability of the composite meet the requirements of complex matrix sample pretreatment. The developed MSPE method based on the magnetic Fe3O4/MOF/COF composite provided an ideal sample pretreatment alternative for determining trace QNs in complex matrixes with selectivity, simplicity, rapidity, and efficiency.

Efficient mapping of lignin depolymerization product pools and quantification of specific monomers through rapid GPC-HPLC-UV/VIS analysis

BackgroundGrowing research on lignin depolymerization to functionalized bio-aromatics has necessitated dedicated analysis techniques. However, immense variability in molecular weight and functional groups of the depolymerization products impedes fast analysis of a large number of samples while remaining in-depth enough for catalyst screening or reaction condition optimization. While GPC-HPLC-UV/VIS has been a promising technique, up until now, the information it provides is largely qualitative. By enabling quantification of key monomeric products and through further reduction of overall analysis time, this study aims to increase the potential of GPC-HPLC-UV/VIS for fast and in-depth characterization of lignin depolymerization product pools. ResultsAnalysis of selected samples, isolated from GPC-HPLC-UV/VIS analyses of lignin depolymerization product pools, with gas chromatography (GC) equipped with an Orbitrap high-resolution accurate mass spectrometer (Orbitrap-HR/AM-MS) is successful in identifying the main low monomeric products. Moreover, these identifications are further substantiated through GPC-HPLC-UV/VIS analysis of standards. Furthermore, straight forward quantification of these products directly within GPC-HPLC-UV/VIS is successfully developed with limits of detection ≤0.05 mmol/L, which is at least on par with more complex analysis techniques. Additionally, several different reversed phase columns are assessed to reduce 2nd dimension (2D) time and, hence, overall analysis time while maintaining the possibility for quantification. A reduction in overall analysis time of about 30% as compared to the state-of-the-art is achieved by using a YMC Triart BIO C4 column as 2D. SignificanceThrough the enhancements introduced in this study, GPC-HPLC-UV/VIS emerges as a unique technique for the analysis of lignin depolymerization product pools, which is capable of fast yet sufficiently in-depth analysis of a large volume of samples. This capability is indispensable for catalyst screening and fine-tuning reaction conditions.

An intercomparison study of four different techniques for measuring the chemical composition of nanoparticles

Abstract. Currently, the complete chemical characterization of nanoparticles (< 100 nm) represents an analytical challenge, since these particles are abundant in number but have negligible mass. Several methods for particle-phase characterization have been recently developed to better detect and infer more accurately the sources and fates of sub-100 nm particles, but a detailed comparison of different approaches is missing. Here we report on the chemical composition of secondary organic aerosol (SOA) nanoparticles from experimental studies of α-pinene ozonolysis at −50, −30, and −10 ∘C and intercompare the results measured by different techniques. The experiments were performed at the Cosmics Leaving OUtdoor Droplets (CLOUD) chamber at the European Organization for Nuclear Research (CERN). The chemical composition was measured simultaneously by four different techniques: (1) thermal desorption–differential mobility analyzer (TD–DMA) coupled to a NO3- chemical ionization–atmospheric-pressure-interface–time-of-flight (CI–APi–TOF) mass spectrometer, (2) filter inlet for gases and aerosols (FIGAERO) coupled to an I− high-resolution time-of-flight chemical ionization mass spectrometer (HRToF-CIMS), (3) extractive electrospray Na+ ionization time-of-flight mass spectrometer (EESI-TOF), and (4) offline analysis of filters (FILTER) using ultra-high-performance liquid chromatography (UHPLC) and heated electrospray ionization (HESI) coupled to an Orbitrap high-resolution mass spectrometer (HRMS). Intercomparison was performed by contrasting the observed chemical composition as a function of oxidation state and carbon number, by estimating the volatility and comparing the fraction of volatility classes, and by comparing the thermal desorption behavior (for the thermal desorption techniques: TD–DMA and FIGAERO) and performing positive matrix factorization (PMF) analysis for the thermograms. We found that the methods generally agree on the most important compounds that are found in the nanoparticles. However, they do see different parts of the organic spectrum. We suggest potential explanations for these differences: thermal decomposition, aging, sampling artifacts, etc. We applied PMF analysis and found insights of thermal decomposition in the TD–DMA and the FIGAERO.

Suspect Screening of Chemicals in Hospital Wastewaters Using Effect-Directed Analysis Approach as Prioritization Strategy.

The increasing number of contaminants in the environment has pushed water monitoring programs to find out the most hazardous known and unknown chemicals in the environment. Sample treatment-simplification methods and non-target screening approaches can help researchers to not overlook potential chemicals present in complex aqueous samples. In this work, an effect-directed analysis (EDA) protocol using the sea urchin embryo test (SET) as a toxicological in vivo bioassay was used as simplified strategy to identify potential unknown chemicals present in a very complex aqueous matrix such as hospital effluent. The SET bioassay was used for the first time here to evaluate potential toxic fractions in hospital effluent, which were obtained after a two-step fractionation using C18 and aminopropyl chromatographic semi-preparative columns. The unknown compounds present in the toxic fractions were identified by means of liquid chromatography coupled to a Q Exactive Orbitrap high-resolution mass spectrometer (LC-HRMS) and using a suspect analysis approach. The results were complemented by gas chromatography-mass spectrometry analysis (GC-MS) in order to identify the widest range of chemical compounds present in the sample and the toxic fractions. Using EDA as sample treatment simplification method, the number of unknown chemicals (>446 features) detected in the raw sample was narrowed down to 94 potential toxic candidates identified in the significantly toxic fractions. Among them, the presence of 25 compounds was confirmed with available chemical standards including 14 pharmaceuticals, a personal care product, six pesticides and four industrial products. The observations found in this work emphasize the difficulties in identifying potential toxicity drivers in complex water samples, as in the case of hospital wastewater.

Phytochemical study of Stachys sylvatica (Lamiaceae) aerial parts

In this article, the first complete phytochemical study of Stachys sylvatica (Lamiaceae) aerial parts, collected in Tuscan-Emilian Apennine, is reported. Twenty-three known compounds were isolated from the chloroform, chloroform-methanol 9:1 and methanol extracts; they were subsequently characterized by means of one- and two-dimensional nuclear magnetic resonance spectroscopy (1D- and 2D-NMR) and mass spectrometry as six simple phenolic derivatives (chlorogenic acid (1), caffeic acid (2), p-coumaric acid methyl ester (3), niduloic acid (4), hydroxytyrosol (5), tyrosol (6)), one glycosylated aliphatic alcohol (ebracteatoside B (7)), six glycosylated phenylpropanoids (decaffeoyl verbascoside (8), lavandulifolioside (9), betanyoside F (10), verbascoside (11), isoacteoside (12), cystanoside D (13)), four flavonoids (stachyspinoside (14), chrysoeriol 7-O-β-D-glucopyranoside (15), naringenin 7-O-(6’’-E + Z-p-coumaroyl)-β-D-glucopyranoside (16), apigenin 7-O-(6’’-E + Z-p-coumaroyl)-β-D-glucopyranoside (17)), three lignans (syringaresinol 4’-O-β-D-glucopyranoside (18), pinoresinol 4-O-β-D-glucopyranoside (19), 2-episesaminol 2-O-β-D-glucopyranoside (20)) and three ionones (loliolide (21), vomifoliol (22), (3S,5R,6R,7E,9R)-3,5,6,9-tetrahydroxy-7-megastigmene (23)). In addition, a further phenolic derivative (ethyl caffeate (b)) and four carboxylic acids (azelaic acid (a), trihydroxyoctadecadienoic acid (c), trihydroxyoctadecenoic acid (d) and dihydroxydodecadienoic acid (e)) have been tentatively identified by ultra-high performance liquid chromatography coupled to an electrospray ionization source high-resolution Orbitrap mass spectrometer (UHPLC-ESI-HR-Orbitrap/MS). Chemosystematic relationships between S. sylvatica and other related species were highlighted.

Explosive formation of secondary organic aerosol due to aerosol-fog interactions

Aerosol particles can profoundly affect the local environment and global climate. Explosive growths of secondary organic aerosol (SOA) are frequently observed during serious haze evens, but their fundamental mechanism remains unclear. We used chamber experiments and kinetic model simulations to reveal the microphysical mechanism for explosive organic aerosol formation. The evolution of SOA with organic vapors under dry and highly humid conditions was determined based on a high-resolution Orbitrap mass spectrometer. We found that the condensation of gas-phase organics could lead to the formation of cloud or fog droplets with relative humidity below 100 %; meanwhile, the aerosol-fog interaction could result in the explosive growth of SOA. Monomeric products from toluene oxidation were verified to primarily contribute to the increased SOA in super humid conditions, which are mainly assigned to be intermediate- and semi-volatile organic compounds. Moreover, we demonstrated that the decreasing temperatures could dramatically amplify organic compounds' co-condensing influence on SOA explosive formation and activation at relative humidity above 85 % and temperature below 20 °C. Our findings revealed that aerosol-fog interaction is the fundamental driving force for explosive organic aerosol formation. It indicates that overlooking the co-condensation of organic vapors with water could significantly underestimate SOA and liquid water content in 3D models.

Mass spectrometry-based Aerosolomics: a new approach to resolve sources, composition, and partitioning of secondary organic aerosol

Abstract. Particulate matter (PM) largely consists of secondary organic aerosol (SOA) that is formed via oxidation of biogenic and anthropogenic volatile organic compounds (VOCs). Unambiguous identification of SOA molecules and their assignment to their precursor vapors are challenges that have so far only succeeded for a few SOA marker compounds, which are now well characterized and (partly) available as authentic standards. In this work, we resolve the complex composition of SOA by means of a top-down approach based on the newly created Aerosolomics database, which is fed by non-target analysis results of filter samples from oxidation flow reactor experiments. We investigated the oxidation products from the five biogenic VOCs α-pinene, β-pinene, limonene, 3-carene, and trans-caryophyllene and from the four anthropogenic VOCs toluene, o-xylene, 1,2,4-trimethylbenzene, and naphthalene. Using ultrahigh-performance liquid chromatography coupled to a high-resolution (Orbitrap) mass spectrometer, we determine the molecular formula of 596 chromatographically separated compounds based on exact mass and isotopic pattern. We utilize retention time and fragmentation mass spectra as a basis for unambiguous attribution of the oxidation products to their parent VOCs. Based on the molecular-resolved application of the database, we are able to assign roughly half of the total signal of oxygenated hydrocarbons in ambient suburban PM2.5 to one of the nine studied VOCs. The application of the database enabled us to interpret the appearance of diurnal compound clusters that are formed by different oxidation processes. Furthermore, by performing a hierarchical cluster analysis (HCA) on the same set of filter samples, we identified compound clusters that depend on sulfur dioxide mixing ratio and temperature. This study demonstrates how Aerosolomics tools (database and HCA) applied to PM filter samples can improve our understanding of SOA sources, their formation pathways, and temperature-driven partitioning of SOA compounds.

Metabolite Profiling of Tartary Buckwheat Extracts in Rats Following Co-Administration of Ethanol Using UFLC-Q-Orbitrap High-Resolution Mass Spectrometry

Tartary buckwheat, a gluten-free pseudocereal, has received considerable attention owing to its unique nutritional ingredients and beneficial health effects such as anti-tumor, anti-oxidation, anti-inflammation and hepatoprotective activities. Pharmacokinetic and metabolite profiling have been preliminarily assessed for Tartary buckwheat extracts. However, its metabolites have not yet been characterized in vivo after co-administration with ethanol when Tartary buckwheat extracts are used for the treatment of alcoholic liver disease. In this paper, a Q-Exactive orbitrap high-resolution mass spectrometer was employed to identify the metabolites of Tartary buckwheat extracts in rat biological samples. Compared with previous metabolite profiling results, a total of 26 novel metabolites were found in rat biological samples, including 11, 10, 2 and 5 novel metabolites in rat plasma, bile, urine and feces, respectively, after oral co-administration of 240 mg/kg Tartary buckwheat extracts with ethanol (42%, v/v). The major metabolic pathways of the constituents in Tartary buckwheat extracts involved hydroxylation, methylation, glucuronidation, acetylation and sulfation. Quercetin and its metabolites may be the pharmacological material basis of Tartary buckwheat for the protective effect against alcoholic liver injury. The research enriched in vivo metabolite profiling of Tartary buckwheat extracts, which provided experimental data for a comprehensive understanding and rational use of Tartary buckwheat against alcoholic liver disease.

Simultaneous quantification of all B vitamins and selected biosynthetic precursors in seawater and bacteria by means of different mass spectrometric approaches

B vitamins have high microbiological relevance in the marine environment, but their very low concentrations and the chemical heterogeneity of the individual vitamins make their analysis challenging. Mass spectrometric analysis of B vitamins in environmental samples at trace levels has mainly been performed using triple quadrupole mass spectrometers operated in targeted analysis mode. The development of such a method can be laborious and error prone. Additionally, high-resolution mass spectrometers can be used to measure a sample in full scan mode and subsequently search the total ion current chromatogram for extracted ion chromatograms of targeted vitamins. Three different analytical approaches for trace analysis of all B vitamins and some of their biosynthetic precursors were optimized and compared on two different mass spectrometers. A triple quadrupole mass spectrometer in selected reaction monitoring mode, and a high-resolution orbitrap mass spectrometer in parallel reaction monitoring, as well as in full scan mode were employed. Detection limits down to 10 ng/L were achieved with all three techniques. The methods were applied to a marine water sample from the North Sea and to the cell extract of a bacterial culture of Phaeobacter inhibens. Most vitamins and precursors were found in the bacterial cell extract and the seawater sample with all three measuring methods. The results of this study emphasize that, in addition to tandem mass spectrometry, high-resolution full scan mass spectrometry is a promising technique for the simultaneous detection of structurally diverse B vitamins in complex natural samples. This enables highly sensitive measurements without loss of detailed mass spectrometric information, which is inevitable when using a triple quadrupole system in MS/MS mode.Graphical abstract

An Improved Isotope Labelling Method for Quantifying Deamidated Cobratide Using High-Resolution Quadrupole-Orbitrap Mass Spectrometry.

Protein deamidation can severely alter the physicochemical characteristics and biological functions of protein therapeutics. Cobratide is a non-addictive analgesic with wide clinical acceptance. However, the Asn residue at position 48 from the N-terminus of the cobratide amino acid sequence (N48) tends to degrade during purification, storage, and transport. This characteristic could severely affect the drug safety and clinical efficacy of cobratide. Traditional methods for quantitating deamidation reported in previous research are characterised by low efficiency and accuracy; the quality control of cobratide via this method is limited. Herein, we developed an improved 18O-labelling method based on the detection of a unique peptide (i.e., the protein fragment of cobratide containing the N48 deamidation hotspot after enzymolysis) using an Orbitrap high-resolution mass spectrometer to quantify deamidated cobratide. The limits of detection and quantification of this method reached 0.02 and 0.025 μM, respectively, and inter- and intra-day precision values of the method were <3%. The accuracy of the 18O-labelling strategy was validated by using samples containing synthesised peptides with a known ratio of deamidation impurities and also by comparing the final total deamidation results with our previously developed capillary electrophoresis method. The recoveries for deamidation (Asp), deamidation isomerisation (iso-Asp), and total deamidation were 101.52 ± 1.17, 102.42 ± 1.82, and 103.55 ± 1.07, respectively. The robustness of the method was confirmed by verifying the chromatographic parameters. Our results demonstrate the applicability of the 18O-labelling strategy for detecting protein deamidation and lay a robust foundation for protein therapeutics studies and drug quality consistency evaluations.

Odorants in the organophosphorus pesticide contaminated soils：identification, prioritization, and quantification using GC-HRMS based on target and non-target screening

Odorants from the pesticide site remediation were complex and changeable, and the screening of key odorous substances was the prerequisite for the process of odor control. In the study, a novel odorants identification method based on the targeted and non-targeted approach by gas chromatography-quadrupole/electrostatic field orbitrap high-resolution mass spectrometer (GC Orbitrap/MS) was established to investigate the low-concentration odor pollution in three organophosphorus pesticide sites. The comprehensive odor characterization method was developed and applied in the light of olfactory threshold, flavor characteristics, molecular structure, response value, and detection rate. 98 pollutants were screened out using target analysis, and 149 substances were identified with confidence levels of at least 2 based on non-target analysis. Based on the analysis results, 42 odorants were screened out by the synthetic evaluation method for priority control, including phenols, aldehydes, ketones, esters, organic sulfide, amines, nitriles, amide, acylchlorides, ethers, heterocyclic, halogenated benzene and polycyclic aromatic hydrocarbons. The limit of detection (LOD) of 42 odorants was from 0.010 to 0.100 ng L−1, which was lower than other detection methods. This research provided a new technology for identification of odorants in pesticide sites.