Microplastics (MP), fragments of plastic generally defined as, less than 5 mm in size, originating from various urban sources, have become a significant environmental concern due to their widespread presence and potential impacts on ecosystems. This study investigates the efficiency of an advanced wastewater treatment plant discharging into the Mediterranean Sea in removing MPs from wastewater. The plant processes wastewater through a series of treatment stages, including screening, desanding, coagulation/flocculation, biological filtration, and sludge incineration. Samples were collected and analysed during three distinct campaigns (dry, rainy, and touristic seasons) to assess the plant’s performance under varying conditions. Using matrix-representative sampling methodologies and Focal Plane Array micro Fourier-Transform Infrared Spectroscopy (FPA-µFT-IR) for MP quantification, the study measured MP concentrations and removal rates. The treatment plant demonstrated high removal rates of microplastics across different periods. Using a mass balance approach, the removal efficiency during the dry sampling period was 99.85%. In the rainy campaign, the efficiency slightly decreased to 99.11% due to increased runoff, while during the touristic period, the efficiency peaked at 99.95%. Polyester was identified as the predominant polymer type. The primary treatment stages, particularly coagulation/flocculation and lamellar settling, are most effective in MP removal. The majority of MPs are retained in the sludge, which is subsequently incinerated, preventing environmental discharge. This research demonstrates that a WWTP employing advanced treatment processes is not a source of MP to the environment but rather a sink. Despite variations in influent MP concentrations across different seasons, the plant consistently maintained high removal rates, effectively mitigating MP pollution. In this study, sludge incineration further ensured that MPs were prevented from entering the environment.