N‐acylethanolamines (NAE) involve in the regulation of energy balance. The genetic polymorphisms of fatty acid amide hydrolase (FAAH) gene, which encodes the NAE degrading enzyme, are associated with obesity. The objective of the current clinical study was to investigate if genetic variants of rs324420 in FAAH gene play a role in regulating circulating NAE levels after five dietary interventions. A double‐blinded randomized crossover clinical trial consisting of five 30‐d periods was conducted. Treatments included 60 g of canola oil (Canola, 59% OA, 20% LA, 10% ALA), high oleic canola oil (CanolaOleic, 72% OA, 15% LA), high oleic canola/DHA oil (CanolaDHA, 63% OA, 13% LA, 6% DHA), corn/safflower oil (CornSaff, 18% OA, 69% LA) and flax/safflower oil (FlaxSaff, 18% OA, 38% LA, 32% ALA). OEA, AEA, PEA, LEA, ALEA, and DHEA plasma levels were measured and genotypes of rs324420 were studied. A total of 130 volunteers completed the study and 129 were successfully genotyped. 85 participants (66%) had CC, and 44 (34%) had CA or AA. Both fatty acid profiles and NAE levels in plasma reflected the dietary fatty acid composition. No differences were observed between two genotypes on OA or DHA levels. However, trends towards higher OEA (p=0.0565) and higher DHEA levels (p=0.0010) were observed in minor allele A carriers across all diets. In the comparison of two OA rich diets, CanolaDHA showed lower OEA level than CanolaOleic feeding (p=0.0006) with no difference in genotypes. CanolaDHA also showed higher DHEA level than CanolaOleic (p<0.0001) and A carriers had higher DHEA level in CanolaDHA (p<0.0001). Our data suggest that rs324420 A carriers favor higher NAE levels because of lowered FAAH activities. But dietary DHA may influence OEA levels due to a preference of such polymorphism for the hydrolysis of DHEA over OEA. The impact of genetic variants of rs324420 may be selective for specific NAEs.Grant Funding Source: Supported by Canola Council of Canada