Reported aneuploidy rates in infertile women, undergoing ovarian stimulation with gonadotropins, have uniformly been reported as high. Whether these rates are ”natural“, or are the consequence of gonadotropin stimulation is, however, unknown. This study, therefore, evaluates the qualitative and quantitative impact of controlled ovarian hyperstimulation with gonadotropins on euploidy rates in human cleavage-stage-embryos. Retrospective cohort study. 678 women with normal ovarian function (based on baseline FSH levels < 10mIU/ml), at ages 24-47 years, underwent, during IVF cycles, three different stimulation protocols, followed by preimplantation genetic diagnosis (PGD) for chromosomes X, Y, 13, 15, 16, 17, 18, 21 and 22. The utilized stimulation protocols involved (1) long agonist stimulation; (2) short agonist stimulation (i.e. a flare or microdose protocol); and (3) antagonist use and were allocated based on stimulation history or other clinical assumptions. Gonadotropin stimulation utilized rec. FSH and/or hMG at varying dosages. Patients underwent PGD for different reasons: Older patients for maternal age, younger patients because of prior implantation failure, patient preference, personal or religious concerns about an abnormal fetus or unwillingness to transfer more embryos. Total gonadotropin usage per cycle correlated positively with the absolute number of euploid embryos achieved per IVF cycle (p=0.03), but showed a negative correlation with the overall percentage of chromosomally normal embryos (p=0.02). LH-containing stimulation resulted in significantly increased percentages of euploid embryos (p=0.02), though in the presence of a decreased absolute number of embryos (p=0.02). When women were age stratified, the positive effect of LH-including stimulation on euploidy (i.e. percentage of euploid embryos) was exclusively present in younger women below age 37.5 years. (p=0.001) Long agonist protocols positively affected percentages of euploid embryos (p<0.0001) in comparison to the other two protocols utilized and this effect was statistically visible in younger as well as older women, below and above age 37.5 years (p<0.01) . This preliminary data set suggests that higher gonadotropin dosages result in more euploid embryos for transfer, even though they reduce the percentage of euploid embryos. High dose gonadotropin stimulation, resulting in large embryo numbers, may, therefore, represent a potential indication for PGD. Exogenous LH supplementation, especially in younger women, and long agonist protocols, appear to improve euploidy rates, though a patient selection bias in regards to the selection of stimulation protocols cannot be ruled out. Euploidy rates after ovarian stimulation thus appear quantitatively and qualitatively affected by stimulation protocols and medication dosages.