Radiotracer studies of substrate assimilation by bacteria in marine sediments are complicated by high abiotic control values, poor sampling reproducibility, and incomplete recovery and quantitation of incorporated radiolabel. An alkaline extraction approach has been developed to improve radiolabel recovery. Net acetate and glucose assimilation were 11.1–22.9 pmol ml −1 h −1 and 0.7–1.3 pmol ml −1 h −1, respectively, by microorganisms in estuarine sediments ranging from 166–233 μm median grain size and 3.1–4.1% silt and clay. The alkaline extraction method resulted in abiotic control values averaging 8.6% of experimental values, reproducible sub-sampling for radiolabel quantitation (S.E. mean −1 ranged from 0.04–0.4 for 42 sample sets), and efficient recovery of incorporated radiolabel. The procedure recovered more than twice the radiolabel recovered using acid extraction or hot water extraction with identical sediments. Alkaline extraction was significantly different from acid and hot water extraction (ANOVA, F = 40.70, p < 0.0001). Use of these methods allows detection of changes in substrate assimilation patterns in fine-grained marine sediments.
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