Salinity (NaCl) is a major abiotic stress that limits crop production, especially under rainfed conditions. Selenium (Se), as an important micronutrient, plays a vital role in mitigating the detrimental effects of different abiotic stresses. The objective of this research was to examine the effect of Se fertilization on sage (Salvia officinalis L.) under different salt stresses. The results showed that Se treatments caused significant improvements in the dry weight (DW) of sage under salt stress. It was found that the DW was increased in the combined treatment of 10 ppm of Se and 100 mM/L of NaCl and was reduced at the highest level of NaCl (100 mM/L). The highest essential oil percentages were recorded in the first harvest (5 ppm of Se), and the control treatment in the second and third harvests but significantly affected the low and high NaCl levels in the sage. Additionally, the results in this study showed that the application of Se from 2.5 ppm to 10 ppm significantly increased the essential oil components when under salt stress. The results showed that 5 ppm of Se and 50 mM/L of NaCl increased SO42− and PO43− concentrations in the first and third harvests. In addition, significant increases in K+ uptakes and decreases in Na+ uptakes were detected when the Se was added while the sage was under salt stress, and the highest Ca2+ and Mg2+ concentrations were all found in the Se treatments as well as in the combined treatments of Se and NaCl.