Heterotrophic Nanoflagellates Research Articles

Impact of Top-Down Regulation on the Growth Efficiency of Freshwater Bacterioplankton

To investigate the hypothesis of top-down control by viruses and heterotrophic nanoflagellates on bacterial-mediated carbon fluxes in freshwater systems, a year-long study (2023–2024) was conducted in the pelagic zone of Lake Saint-Gervais (France). The variability in BGE (9.9% to 45.5%) was attributed to the decoupling of production and respiration, providing bacterioplankton communities with a competitive advantage in adapting to fluctuating environmental disturbances in freshwater systems. The high nucleic acid (HNA) bacterial community, the active fraction, contributed the most to bacterial production and was linked to BGE estimates. Weak bottom-up controls (nutrient concentrations and stoichiometry) on BGE suggested a stronger role for mortality forces. Among viral subgroups (VLP1–VLP4) identified via flow cytometry, the dominant low-fluorescence DNA VLP1 subgroup (range = 0.7 to 3.1 × 108 VLP mL−1) accounting for the majority of viral production was closely linked to the HNA population. Both top-down forces exerted antagonistic effects on BGE at the community level. The preferential lysis and grazing of the susceptible HNA population, which stimulated bacterial community respiration more than production in the non-target population, resulted in reduced BGE. These results underscore the key role of top-down processes in shaping carbon flux through bacterioplankton in this freshwater system.

Two-Decade Changes in the Ciliate Assemblage Feeding Pattern Reflect the Reservoir Nutrient Load

The perception of the importance of ciliate in freshwater has changed dramatically since the “microbial loop” conceptualisation, reflecting methodological attempts. The data from two decades (1994–2018) on the surface (0–3 m) ciliate assemblage in the Slapy reservoir (Vltava River, Czech Republic) during two different nutrient-load defined periods were analysed. We grouped the identified, quantified, and biomass-evaluated ciliates in the quantitative protargol-impregnated preparations according to their feeding behaviour. The sampling median and interquartile range data of the ciliates were plotted; the modelled water age, nutrients, bacteria, heterotrophic nanoflagellates, and Rhodomonas spp. were applied as the main explanatory background variables. We validated the differences between the periods, engaging multivariate analyses. The picoplankton-filtering species dominated the assemblages in an annual mean (halteriids and minute strobilidiids followed by peritrichs). Algae hunting urotrichs, Balanion planctonicum, and nanoplankton filtering tintinnids were significant before the spring phytoplankton peak when a maximum of ciliate biomass reflected mixotrophic nanoplankton filtering pelagostrombidiids. Only there did ciliate biomass tightly follow their quantified prey. Heterotrophic and mixotrophic Askenasia and Lagynophrya were typical raptorial/flagellate-hunting cilates; only Mesodinium spp. reached the maximum during autumn. The observed oligotrophication of the reservoir increased the ciliate assemblage biomass in the surface layer during stratification in concordance with the Plankton Ecology Group (PEG) model.

Variability of winter cooling affects intensity of phytoplankton spring blooms – how resilient is the ciliate assemblage composition to changes in food availability?

After years of partial winter mixing in Lake Zurich (Switzerland), a complete turnover of the water column reoccurred during winter/spring 2021. It was favored by a cold, windy winter and a small difference of water temperatures between the surface zone and a hypolimnion (deep water zone) that had gradually warmed during the previous years. The trend of declining phytoplankton spring blooms due to incomplete winter mixing was interrupted by mass development of algae due to the upwelling of nutrients accumulated in the hypolimnion. The effects of this singular deep mixing on the microbial food web during spring were studied in a high-frequency sampling campaign and compared with data from two years of partial winter mixing (2020 and 2022). A particular focus was put on the quantitative composition of the ciliate assemblage. Our results showed that not all organisms reacted equally to the nutrient (phosphorus) boost in the surface zone. Centric diatoms and cryptophytes profited most directly from the deep mixing, outcompeting the otherwise dominant cyanobacterium Planktothrix rubescens. Heterotrophic bacteria and their top predators, the ‘heterotrophic nanoflagellates’ trophic guild, were less affected by the nutrient supply and showed only short-lived increases of maximal biomass. The assemblage composition of ciliate morphotypes was highly resilient over the three years, presumably due to the range of acceptable food items of the predominant omnivorous species. However, numerous ciliate morphotypes showed brief mass development in 2021, and Balanion planctonicum, small Urotricha species and tintinnids were significantly more frequent than in 2020/2022. Small interception-feeding morphotypes apparently profited from the rich supply of their cryptomonad food, and tintinnid morphotypes additionally benefited from the availability of building material (e.g., centric diatom shells) for their loricae. In summary, we show that effects of lake warming in deep stratifying lakes are not as unidirectional as previously presumed, and we reveal resilience of the pelagic ciliate morphotype assemblage to lake warming related interannual variability in Lake Zurich.

Ciliate diversity and growth rates in experimental recirculating aquaculture and aquaponics systems using microscopy

The function of recirculating aquaculture systems (RAS) relies on microbial communities, which convert toxic, fish-excreted ammonia into substances that can provide nutrients to plants as in the case of aquaponics systems. In the present study, heterotrophic protist communities of experimental sea water RAS and freshwater aquaponics systems were investigated using microscopy to characterize their diversity, natural abundance, and potential growth rates. Heterotrophic protist abundance was low (732 ± 21 to 5451 ± 118 ciliates L−1 and 58 ± 8 to 147 ± 18 nanoflagellates mL−1 in the aquaponics system and 78 ± 28 to 203 ± 48 ciliates L−1 in the RAS), which is in line with values typically reported for rivers. In the aquaponics system, ciliates grew faster in the fish rearing tanks (1.9 ± 0.01 to 1.21 ± 0.03 d−1 compared to 0.54 ± 0.03 to 0.79 ± 0.05 d−1 in the other compartments), while heterotrophic nanoflagellates grew slower in drain tanks downstream of the hydroponics compartment (0.5 ± 0.3 to 1.37 ± 0.05 d−1 and 4.09 ± 0.11 d−1 to 6.03 ± 0.34 d−1in the other compartments). Results indicated distinct niches and reduced microeukaryotic diversity at the end of the system’s operation cycle.

Ecology of aerobic anoxygenic phototrophs on a fine-scale taxonomic resolution in Adriatic Sea unravelled by unsupervised neural network

BackgroundAerobic anoxygenic phototrophs are metabolically highly active, diverse and widespread polyphyletic members of bacterioplankton whose photoheterotrophic capabilities shifted the paradigm about simplicity of the microbial food chain. Despite their considerable contribution to the transformation of organic matter in marine environments, relatively little is still known about their community structure and ecology at fine-scale taxonomic resolution. Up to date, there is no comprehensive (i.e. qualitative and quantitative) analysis of their community composition in the Adriatic Sea.ResultsAnalysis was based on pufM gene metabarcoding and quantitative FISH-IR approach with the use of artificial neural network. Significant seasonality was observed with regards to absolute abundances (maximum average abundances in spring 2.136 ± 0.081 × 104 cells mL−1, minimum in summer 0.86 × 104 cells mL−1), FISH-IR groups (Roseobacter clade prevalent in autumn, other Alpha- and Gammaproteobacteria in summer) and pufM sequencing data agglomerated at genus-level. FISH-IR results revealed heterogeneity with the highest average relative contribution of AAPs assigned to Roseobacter clade (37.66%), followed by Gammaproteobacteria (35.25%) and general Alphaproteobacteria (31.15%). Community composition obtained via pufM sequencing was dominated by Gammaproteobacteria clade NOR5/OM60, specifically genus Luminiphilus, with numerous rare genera present in relative abundances below 1%. The use of artificial neural network connected this community to biotic (heterotrophic bacteria, HNA and LNA bacteria, Synechococcus, Prochlorococcus, picoeukaryotes, heterotrophic nanoflagellates, bacterial production) and abiotic environmental factors (temperature, salinity, chlorophyll a and nitrate, nitrite, ammonia, total nitrogen, silicate, and orthophosphate concentration). A type of neural network, neural gas analysis at order-, genus- and ASV-level, resulted in five distinct best matching units (representing particular environments) and revealed that high diversity was generally independent of temperature, salinity, and trophic status of the environment, indicating a potentially dissimilar behaviour of aerobic anoxygenic phototrophs compared to the general bacterioplankton.ConclusionThis research represents the first comprehensive analysis of aerobic anoxygenic phototrophs in the Adriatic Sea on a trophic gradient during a year-round period. This study is also one of the first reports of their genus-level ecology linked to biotic and abiotic environmental factors revealed by unsupervised neural network algorithm, paving the way for further research of substantial contribution of this important bacterial functional group to marine ecosystems.

Vertical and latitudinal distribution of bottom-up and top-down controls of heterotrophic prokaryotes in the Red Sea

Heterotrophic prokaryotes (HPs) represent the largest fraction of living biomass in the ocean. Comprehensively understanding the spatio-temporal variability of their controlling factors remains a challenge in microbial oceanography, especially in little explored low latitude regions such as the Red Sea, one of the hottest and saltiest basins on Earth. In this study, we assessed the vertical (5–1000 m) and latitudinal (16°-27° N) variations in HPs and their bottom-up (resource availability) and top-down controls (protistan grazing and viral lysis) at eight stations along the Red Sea, in three cruises carried out between 2017 and 2019. The decrease in HPs abundances with depth was less pronounced than that of heterotrophic nanoflagellates (HNFs) and viruses. We found that inorganic nutrient and dissolved organic carbon (DOC) concentrations do not vary significantly from north to south, thus suggesting a similar bottom-up control on HPs abundances along the latitudinal gradient. We found significant southward increase in the HP:HNF ratio (r = 0.56, p < 0.0001, n = 140), suggesting that HNFs have a lower impact on their HPs prey in the southern Red Sea. The preference of HNFs for larger HPs cells with depth was found only in the spring cruise. Viral abundances do not show any marked latitudinal gradient but show a significant positive relationship with HPs abundances in the water column in all seasons. The higher linear regression slope found in summer suggests that viruses are more important for HPs mortality in the warmer months. This study strengthens the importance of top-down controls in maintaining lower HPs stocks in the Red Sea and suggests that both latitudinal and seasonal variations have minor but measurable roles.

Do weathered microplastics impact the planktonic community? A mesocosm approach in the Baltic Sea

Microplastics (MPs) are ubiquitous pollutants of increasing concern in aquatic systems. However, little is still known about the impacts of weathered MPs on plankton at the community level after long-term exposure. In this study, we investigated the effects of weathered MPs on the structure and dynamics of a Baltic Sea planktonic community during ca. 5 weeks of exposure using a mesocosm approach (2 m3) mimicking natural conditions. MPs were obtained from micronized commercial materials of polyvinyl chloride, polypropylene, polystyrene, and polyamide (nylon) previously weathered by thermal ageing and sunlight exposure. The planktonic community was exposed to 2 μg L-1 and 2 mg L-1 of MPs corresponding to measured particle concentrations (10–120 μm) of 680 MPs L-1 and 680 MPs mL-1, respectively. The abundance and composition of all size classes and groups of plankton and chlorophyll concentrations were periodically analyzed throughout the experiment. The population dynamics of the studied groups showed some variations between treatments, with negative and positive effects of MPs exhibited depending on the group and exposure time. The abundance of heterotrophic bacteria, pico- and nanophytoplankton, cryptophytes, and ciliates was lower in the treatment with the higher MP concentration than in the control at the last weeks of the exposure. The chlorophyll concentration and the abundances of heterotrophic nanoflagellates, Astromoeba, dinoflagellate, diatom, and metazooplankton were not negatively affected by the exposure to MPs and, in some cases, some groups showed even higher abundances in the MP treatments. Despite these tendencies, statistical analyses indicate that in most cases there were no statistically significant differences between treatments over the exposure period, even at very high exposure concentrations. Our results show that weathered MPs of the studied conventional plastic materials have minimal or negligible impact on planktonic communities after long-term exposure to environmentally relevant concentrations.

Extracted Spectral Signatures from the Water Column as a Tool for the Prediction of the Structure of a Marine Microbial Community

In this communication, we present an innovative approach leveraging advanced Machine Learning (ML) and Artificial Intelligence (AI) techniques, specifically the Non-Negative Matrix Factorization (NMF) method, to analyze downward and upward light spectra collected by Hyperspectral Ocean Color Radiometer (HyperOCR, HOCR) sensors in the water column. Our work focuses on the development of a robust and efficient tool for unraveling the structure and activities of natural microbial assemblages in the ocean. By applying the NMF method to HyperOCR data, we successfully extracted five spectral signatures, representing unique patterns in the data. These signatures were instrumental in predicting the abundances of various microbial components, including bacteria, heterotrophic nanoflagellates, and picoeukaryotes, showcasing the potential of ML and AI in advancing oceanographic studies. To validate these methods, the study area included a shallow coastal area under the influence of freshwater inflow and an open offshore area with a depth of 100 m. The study sites in coastal and offshore waters (Kaštela Bay and Stončica Vis, respectively) had significantly different hydrographic and microbiological characteristics. Kaštela Bay had lower temperatures and salinity than the site on Vis. We have demonstrated prediction of the structure of the microbial community through application of different AI and ML methods with specific HOCR sensors.

Microperiphyton development in lakes and reservoirs

Biofilms play an important role in the material flux of lakes and other aquatic ecosystems, but little is known about the mechanisms controlling their community structure under natural conditions. In the present study, we focused on the use of artificial substrates for the life strategies of microbial communities investigation. Heterotrophic nanoflagellates (HNF) are known as most important grazers of bacteria in the biofilm communities. The Choanoflagellida have an essential role in microbial food webs contributing to a process of self-purification of water bodies as well as sponge choanocytes, filtering large water volumes. Effects of Cyanobacteria and other pathogenic microorganisms on sponges are very similar to the same effects on Choanoflagellida and HNF in the early phase of biofilm colonization. Standard microbial biofilms (model communities) can serve for ecorobots development.

Insights from single-strain and mixed culture experiments on the effects of heatwaves on freshwater flagellates.

The increasing frequency and intensity of heatwaves driven by climate change significantly impact microbial communities in freshwater habitats, particularly eukaryotic microorganisms. Heterotrophic nanoflagellates are important bacterivorous grazers and play a crucial role in aquatic food webs, influencing the morphological and taxonomic structure of bacterial communities. This study investigates the responses of three flagellate taxa to heatwave conditions through single-strain and mixed culture experiments, highlighting the impact of both biotic and abiotic factors on functional redundancy between morphologically similar protist species under thermal stress. Our results indicate that temperature can significantly impact growth and community composition. However, density-dependent factors also had a significant impact. In sum, stabilizing effects due to functional redundancy may be pronounced as long as density-dependent factors play a minor role and can be overshadowed when flagellate abundances increase.

The modern methods development for microbiological water quality assessment in lakes

The functional diversity of free-living aquatic protozoans is discussed with respect to the feeding ecology, life strategies and water quality. Heterotrophic nanoflagellates (HNF) are known as most important grazers of bacteria in many aquatic ecosystems. Recent studies of flagellate feeding processes indicated that there are significant species-specific variability regarding the food uptake and food selection of bacterivorous flagellates. The Choanoflagellida have an essential role in microbial food webs contributing to a process of self-purification of water bodies as well as are used in monitoring systems. We show that diversity and relative abundance of ciliates and other protozoans can be used as indicators of toxic pollution and acidification. Multivariate statistics were used to design “the scale of toxicity” across a gradient of toxicant stress and organic compounds. A new index of periphyton flagellates (IPF) as indicator of the trophic status of a water-body and a simplified index for a sublethal toxicity assessment were developed.

Algae–zooplankton relationships during the year-round cyanobacterial blooms in a shallow lake

Cyanobacterial blooms have a strong impact on the food web structure, interactions and ecosystem functioning. The aim of this study was to describe the seasonal changes in composition and abundance of heterotrophic nanoflagellates, ciliates, rotifers, and crustaceans in relation to algae and nutrients in a shallow eutrophic lake (north-eastern Poland) dominated by cyanobacteria and exposed to the strong impact of cormorants. Our results showed that algae accounted for a small part of the total phytoplankton abundance (9–40%) and biomass (10–21%) and were dominated by diatoms and cryptophytes. All of the studied groups of planktonic organisms were quite rich in species (95 algal, 79 ciliate, 44 rotifer and 25 crustacean species) and relatively abundant. Copepods formed a substantial part (45–83%) of the total zooplankton biomass during all seasons. Relatively low algal to zooplankton biomass ratio (0.8–1.1) suggests that during spring, summer, and winter algae were not sufficient food resources for metazooplankton, which supplemented its diet with protists (heterotrophic nanoflagellates and ciliates). In a shallow lake dominated by cyanobacteria, winter (ice-covered period) may be a more favourable period for the growth of some groups of algae, ciliates and rotifers than other seasons due to decreasing abundance of cyanobacteria.

Morphological, phylogenetic and biogeographic characterizations of three heterotrophic nanoflagellates isolated from coastal areas of Korea

ABSTRACT Heterotrophic nanoflagellates (HNFs, 2–20 μm in size) are important bacterivores in aquatic environments. We isolated and distinguished three HNF strains from Korean coastal samples: Ancyromonas kenti strain KM086, Cafeteria mylnikovii strain JS001 and Multimonas media strain JS004. Their 18S rDNA sequences aligned with previously known counterparts. Under light microscopy, all strains match their previous respective species descriptions. However, under scanning electron microscopy, strain JS004 shows some features at odds with prior observations of M. media, including different putative extrusomes, an ‘unfrilled’ skirt margin, and a putative ‘tusk’. We also used the V4 region of 18S rDNA to study species distribution globally using Malaspina-2010 data from 122 surface stations and 13 various depth stations. Intriguingly, we found that A. kenti was most abundant in low-oxygen conditions of the bathypelagic zones (1000–4000 m deep) in the Pacific Ocean, suggesting a specialization for thriving in low-oxygen habitats. In contrast, we only found M. media represented at one surface site, and C. mylnikovii was not found at all. Thus, A. kenti may be one of the most important feeders on bacteria in the bathypelagic zones with low-oxygen concentrations, while the other two isolates appear to be rare species in marine systems.

Top-down and bottom-up control of plankton structure and dynamics in hypertrophic fishponds

We investigated the effects of strong top-down control by high fish stock on structure and seasonal dynamics of plankton in nine fishponds under conventional fishery management based on auxiliary feeding during two vegetation seasons. Mean concentrations of total nitrogen, phosphorus, and high densities of phytoplankton, bacteria, heterotrophic nanoflagellates, and ciliates indicated hypertrophic state of the fishponds, as well as a markedly reduced control of these microbial food web components by crustacean zooplankton. Mean seasonal densities of zooplankton varied within one order of magnitude for cladocerans, copepods, nauplii, and rotifers. Daphnia were found in most fishponds in densities up to 630 ind. l−1 (median: 53 ind. l−1). While TN and TP concentrations were high, dissolved inorganic N (median: 29 µg l−1) and reactive P (median: 11 µg l−1) indicated possible nutrient deficiency. The fish stock index (defined as the product of biomass and square root of densities) was used as a proxy for fish predation pressure. Multivariate analysis revealed that nutrients and high fish stocks (market carp, carp fry, and/or undesirable small planktivorous fishes) were the main driving forces shaping the fishpond plankton. The resulting trophic structure thus severely reduced the herbivorous zooplankton–fish link during a vegetation season.

Predation in a Microbial World: Mechanisms and Trade-Offs of Flagellate Foraging.

Heterotrophic nanoflagellates are the main consumers of bacteria and picophytoplankton in the ocean and thus play a key role in ocean biogeochemistry. They are found in all major branches of the eukaryotic tree of life but are united by all being equipped with one or a few flagella that they use to generate a feeding current. These microbial predators are faced with the challenges that viscosity at this small scale impedes predator-prey contact and that their foraging activity disturbs the ambient water and thus attracts their own flow-sensing predators. Here, I describe some of the diverse adaptations of the flagellum to produce sufficient force to overcome viscosity and of the flagellar arrangement to minimize fluid disturbances, and thus of the various solutions to optimize the foraging-predation risk trade-off. I demonstrate how insights into this trade-off can be used to develop robust trait-based models of microbial food webs.

Identification of the heterotrophic nanoflagellate Bilabrum latius in the southern Adriatic (Mediterranean Sea)

Heterotrophic flagellates (HF) represent an important protist group in marine ecosystem functioning. Characterised by high taxonomic diversity, identification and classification of HF is often difficult using classical methods of light microscopy (LM). Complementing LM with molecular methods, such as barcoding, enables reliable taxonomic identification of even small size nanoflagellates that share similar or unnoticeable morphological features. The order Bicosoecida is a group of heterotrophic nanoflagellates that are important part of protist plankton and benthic communities of the world oceans. Recently, on the basis of high-resolution light microscopy and barcoding, a new bicosoecid genus, Bilabrum, was described with B. latius sp. as a type species. Our study reports on identification of B. latius from co-culture with the diatom species Chaetoceros affinis isolated from fresh plankton samples collected in the southern Adriatic. This detection of the Adriatic B.latius represents first record of this species outside itś up to now known and described habitat (deep-sea sediment of the South - East Atlantic Ocean) and in diatom co-culture.

Seasonality of top-down control of bacterioplankton at two central Red Sea sites with different trophic status.

The role of bottom-up (nutrient availability) and top-down (grazers and viruses mortality) controls on tropical bacterioplankton have been rarely investigated simultaneously from a seasonal perspective. We have assessed them through monthly samplings over 2 years in inshore and offshore waters of the central Red Sea differing in trophic status. Flow cytometric analysis allowed us to distinguish five groups of heterotrophic bacteria based on physiological properties (nucleic acid content, membrane integrity and active respiration), three groups of cyanobacteria (two populations of Synechococcus and Prochlorococcus), heterotrophic nanoflagellates (HNFs) and three groups of viruses based on nucleic acid content. The dynamics of bacterioplankton and their top-down controls varied with season and location, being more pronounced in inshore waters. HNFs abundances showed a strong preference for larger prey inshore (r = -0.62 to -0.59, p = 0.001-0.002). Positive relationships between viruses and heterotrophic bacterioplankton abundances were more marked inshore (r = 0.67, p < 0.001) than offshore (r = 0.44, p = 0.03). The negative correlation between HNFs and viruses abundances (r = -0.47, p = 0.02) in shallow waters indicates a persistent seasonal switch between protistan grazing and viral lysis that maintains the low bacterioplankton stocks in the central Red Sea area.

Analysis of the Influence of Seasonal Water Column Dynamics on the Relationship between Marine Viruses and Microbial Food Web Components Using an Artificial Neural Network

Artificial neural network analysis (ANN) is used to study the seasonal distribution of viruses and microbial food web (MFW) components in the open Adriatic Sea. The effect of viruses within the MFW is often overlooked, although viruses play an important role in microbial community dynamics. The results showed that the strongest influence is found in the nonlinear relationship between viruses and temperature. In addition, the algorithm showed that the number of viral populations in the P-limited open sea varies by season and according to the abundance of their main hosts, HB. A strong positive relationship between viruses and HB was found in more than 50% of the observed data. Moreover, this algorithm confirmed the association of the virus with the autotrophic part of the picoplankton and with heterotrophic nanoflagellates. The dynamics of the four resulting clusters, characterized by biological and environmental parameters, is described as a cyclic pattern in the water layer above the thermocline. Neural gas network analysis has been shown to be an excellent tool for describing changes in MFW components in the open Adriatic.

Heterotrophic Nano- and Microplankton in the Kara Sea in Autumn

Based on the obtained and all available literature data, it has been shown that the abundance of heterotrophic flagellates in the Kara Sea at the end of the season is relatively stable in different years, while in other Arctic seas (East Siberian and Chukchi Seas) the described values of this indicator are 1.5–2 times higher. The indicators of the abundance of heterotrophic nanoflagellates in the bottom water vary to a much lesser extent than in the water column. The abundance of heterotrophic nanoflagellates in the bottom water of the bays of the Novaya Zemlya archipelago is significantly lower than in the same biotopes in the eastern and western parts of the Kara Sea. Most organisms are free-living forms. About a third of the protozoa are associated with detritus particles. The ratio of the biomass of heterotrophic flagellates to the biomass of bacteria more than doubles in the layer of bottom water and in the upper layer of sediments compared to the water column. For the water column of the Kara Sea, the calculated value of grazing of bacterioplankton by flagellates does not exceed 2% of their biomass. The ratio of the eaten biomass of bacterioplankton to the biomass of consumers in most cases decreases with depth.

Distribution, Size-Morphological Structure and Production of Heterotrophic Bacterioplankton in Gorky Reservoir

The abundance, biomass, size-morphological structure, growth rate and production of bacterioplankton, the intensity of primary phytoplankton production and dark fixation of CO2, as well as the abundance and biomass of heterotrophic nanoflagellates were determined in a large plain eutrophic reservoir (Gorky Reservoir, Middle Volga). The abundance, biomass, and production of bacterioplankton were relatively high and averaged 7.6 × 106 cells/mL, 117.9 mg C/m3, and 59.2 mg C/(m3 × day), respectively. Heterotrophic nanoflagellates reached a high level of quantitative development – 6.9 × 103 cells/mL, 47.9 mg C/m3. Their biomass averaged 41.6 ± 18.4% of the bacterioplankton biomass, which indicates that, in addition to bacteria, nanoflagellates used other food sources. Small rods and cocci dominated among the size-morphological bacterioplankton groups and accounted for 36.3 and 33.3% of its total abundance, respectively. Small rods averaged more than a half (56.2%) of the total biomass and were the most stable component of the community. The growth rate and production of bacterioplankton increased in those parts of the reservoir where the medium-sized cocci and coccobacilli accounted for from 18.2 to 29.3% of the total abundance. The highest bacterial activity was recorded in the area affected by the warm waste waters of the Volgorechensk State District Power Plant. Based on the data obtained, the reservoir divided on the upper river section and the lower lake section.