A novel heteronuclear Salen complex, [NiHgCl2(L)] (1) (H2L = N,N′-bis(3-methoxysalicylidene)-2,2-dimethylpropane-1,3-diamine) has been integrated using two different synthetic lines. The complex is characterized by various spectroscopic techniques, matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS), and single-crystal X-ray diffraction (SC-XRD). Powder X-ray diffraction (PXRD) confirms complex phase purity and crystallinity. The scanning electron microscope and energy-dispersive X-ray analysis (SEM-EDX) identified the element’s chemical composition, morphology, and crystal size. X-ray diffraction revealed ligand released phenoxide-type deprotonated form [L]2− and had spent two pockets, N2O2 pocket occupied by Ni(II) comprises square planar geometry (NiN2O2). In contrast, Hg(II) occupies a large open O4 compartment accompanied by two chloride ions (HgO4Cl2), switching to achieve a trigonal prismatic structure. The close surveillance of the crystal structure discloses various non-covalent interactions like H-bonding, CH⋯π, and π⋯π. The complex’s geometry was fully optimized, employing the quantum chemistry method at the DFT/B3LYP with the 6-31G (d, p) basis set to divine the vibrational spectra, NMR chemical shifts, and solvent effect on the electronic properties. Natural Bond Orbital (NBO) dissected the stability of the molecular structure and the intermolecular orbital interactions. The highest stabilizing energy was 132.84 kcal/mol between the lone pair C12 and the antibonding of N7-C17 atoms. The Hirshfeld Surface (HS) is detectable that the H⋯N input is maximum than H⋯O. The electrophilic-nucleophilic sites, non-covalent interactions, and reactivity were investigated based on Molecular Electrostatic Potential (MESP), Reduced Density Gradient (RDG), atoms in a molecule (AIM), and the HOMO-LUMO difference. Eventually, a significant correlation was anticipated between theoretical and experimental spectroscopic criteria.
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