In recent years, electrochemical separation systems have received a great attention due to their excellent capabilities in environmental remediation, water desalination, and resource recovery. The performances of electrochemical separation systems are often interpreted in terms of capacity and selectivity, both of which are highly dependent on electrode materials. For instance, capacitive deionization (CDI) used for desalination of water employs activated carbon electrodes, as it enables capture and release of sodium chloride in large amounts. In addition, lithium-ion selective electrode such as delithiated LiMn2O4 (i.e. λ-MnO2) or LiFePO4 plays an essential role in selectivity of electrochemical lithium recovery systems. However, although the importance electrode materials cannot be overemphasized for such electrochemical separations, it is also true that we are yet to achieve a sufficient level of understanding on their behaviors in the systems, which is necessary to establish rational electrode-design strategies to enhance capacity and selectivity of the electrochemical separation systems. In this talk, our recent findings on surface electrochemistry of carbon electrodes in electrochemical desalination will be introduced, together with an overview on the non-favorable Faradaic reactions thoroughly characterized with the assistance of various X-ray and electrochemical techniques. Additionally, development of heteroatom-doped carbon material and how it resulted in a highly stable CDI performance will be presented. Moreover, I will talk about our efforts on characterization of physicochemical behavior of λ-MnO2 in electrochemical lithium recovery systems, based on which a significantly higher utilization rate of the electrode materials could be achieved.