The aim of this paper was to explore the remediation effect and mechanism of Wetland pine (Pinus elliottii), Chinese fir (Cunninghamia lanceolata (Lamb.) Hook), and Alder (Alnus cremastogyne Burkill) on heavy metal contaminated soil in the iron tailings of Jiulong Iron Tailings Area. At the same time, the specificity of plant rhizosphere and non-rhizosphere soil microbial community structure and ecological function were analyzed based on macrogenomic sequencing. The results showed that the dominant microbial genera in J1 (control) was Acidobacteria, followed by Proteobacteria and Actinobacteria. The microbial genera with the highest percentage of relative abundance in J2, J3, J4, J5, and J6 (J2, Wetland Pine rhizosphere; J3, Wetland Pine non-rhizosphere; J4, Chinese fir rhizosphere; J5, Alder rhizosphere; J6, Alder non-rhizosphere) were Proteobacteria, followed by Acidobacteria, and Actinobacteria. It was found that Proteobacteria promoted heavy metal solubilization, activated heavy metals, and converted their forms to improve plant uptake of heavy metals. This proves that the microorganisms of Proteobacteria are the key microbial genera in the study of regional heavy metal remediation. The antibiotic resistance genes (ARGs) in microorganisms can respond to the inducement of heavy metals. Here, we investigated the relationship between the abundance of soil microorganisms ARGs and heavy metal pollution in Jiulong Iron Tailings Area. There are significant differences in the quantity and category of ARGs in the rhizosphere and non-rhizosphere soil samples of the three tree species. The results of this study provide the foundation for the theory and practice of remediation of heavy metal contamination in soils of iron tailing areas in Jiulong Iron Tailings Area in similar stand conditions.
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