Head Motion Artifacts Research Articles

Motion Artifact Detection for T1-Weighted Brain MR Images Using Convolutional Neural Networks.

Quality assessment (QA) of magnetic resonance imaging (MRI) encompasses several factors such as noise, contrast, homogeneity, and imaging artifacts. Quality evaluation is often not standardized and relies on the expertise, and vigilance of the personnel, posing limitations especially with large datasets. Machine learning based on convolutional neural networks (CNNs) is a promising approach to address these challenges by performing automated inspection of MR images. In this study, a CNN for the detection of random head motion artifacts (RHM) in T1-weighted MRI as one aspect of image quality is proposed. A two-step approach aimed to first identify images exhibiting pronounced motion artifacts, and second to evaluate the feasibility of a more detailed three-class classification. The utilized dataset consisted of 420 T1-weighted whole-brain image volumes with isotropic resolution. Human experts assigned each volume to one of three classes of artifact prominence. Results demonstrate an accuracy of 95% for the identification of images with pronounced artifact load. The addition of an intermediate class retained an accuracy of 76%. The findings highlight the potential of CNN-based approaches to increase the efficiency of post-hoc QAs in large datasets by flagging images with potentially relevant artifact loads for closer inspection.

A compressible high-sensitivity flexible sensor array for real-time motion artifact detection in magnetic resonance imaging

Magnetic Resonance Imaging (MRI) serves as a critical tool in modern medical diagnosis, and its accuracy is directly linked to patient treatment and recovery. However, unintentional patient movement during MRI scans often results in motion artifacts on the images, significantly compromising the precision of diagnosis. Traditional solutions typically involve identifying and addressing these issues after the scanning sequence is completed, leading to significant resource waste and delays in patient treatment. Here, we propose a flexible tactile sensor array system based on triboelectric nanogenerators (TENGs) for real-time monitoring of head motion artifacts in MRI. The unique design of the tactile sensor structure, operating in a dual-electrode mode, maintains high sensitivity and a wide response range, even with a minimal surface area. The advantage of TENG is the wide range of material choices, ensuring that a proper selection will not interfere with MRI during application. By integrating TENG sensor technology and control program systems, this solution provides a novel approach for monitoring head motion artifacts in MRI. On the basis of ensuring patient comfort, it has saved the time and money costs of monitoring, improved the efficiency of detection, and demonstrated significant potential in the field of medical imaging.

Regional deep atrophy: Using temporal information to automatically identify regions associated with Alzheimer’s disease progression from longitudinal MRI

Abstract Longitudinal assessment of brain atrophy, particularly in the hippocampus, is a well-studied biomarker for neurodegenerative diseases, such as Alzheimer’s disease (AD). Estimating brain progression patterns can be applied to understanding the therapeutic effects of amyloid-clearing drugs in research and detecting the earliest sign of accelerated atrophy in clinical settings. However, most state-of-the-art measurements calculate changes directly by segmentation and/or deformable registration of MRI images, and may misreport head motion or MRI artifacts as neurodegeneration, impacting their accuracy. In our previous study, we developed a deep learning method DeepAtrophy that uses a convolutional neural network to quantify differences between longitudinal MRI scan pairs that are associated with time. DeepAtrophy has high accuracy in inferring temporal information from longitudinal MRI scans, such as temporal order or relative interscan interval. DeepAtrophy also provides an overall atrophy score that was shown to perform well as a potential biomarker of disease progression and treatment efficacy. However, DeepAtrophy is not interpretable, and it is unclear what changes in the MRI contribute to progression measurements. In this paper, we propose Regional Deep Atrophy (RDA), which combines the temporal inference approach from DeepAtrophy with a deformable registration neural network and attention mechanism that highlights regions in the MRI image where longitudinal changes are contributing to temporal inference. RDA has similar prediction accuracy as DeepAtrophy, but its additional interpretability makes it more acceptable for use in clinical settings, and may lead to more sensitive biomarkers for disease monitoring and progression understanding in preclinical AD.

Estimation and Removal of Residual Motion Artifact in Retrospectively Motion-Corrected fMRI Data: A Comparison of Intervolume and Intravolume Motion Using Gold Standard Simulated Motion Data

Residual head motion artifact in motion-corrected resting-state (rs-) functional MRI (fMRI) and fMRI datasets reduces the temporal signal-to-noise ratio and leaves non-neuronal signal components in the data, which can induce false findings in these studies. While various residual motion nuisance regressors have been proposed to regress out residual motion artifact after motion correction, these validations have typically been conducted empirically in in vivo data, since realistic head motion–corrupted MR data are not available. Here, we generated motion-corrupted MR data by altering imaging plane coordinates before each volume and slice acquisition from an ex vivo brain phantom using the simulated prospective acquisition correction (SIMPACE) sequence. Testing SIMPACE motion-corrupted data with various intervolume motion patterns, we first investigated the mechanism of the residual motion signal after motion correction and also proposed a voxel-wise motion nuisance regressor, called the partial volume (PV) regressor. We also modified the slice-oriented motion-correction method (SLOMOCO) pipeline with 6 volume-wise rigid intervolume motion parameters (Vol-mopa), 6 slice-wise rigid intravolume motion parameters (Sli-mopa), and the proposed PV motion nuisance regressor. We then compared the residual signal after application of the modified SLOMOCO (mSLOMOCO) pipeline with two other methods: intervolume motion-correction method (VOLMOCO), and the original SLOMOCO (oSLOMOCO). We found that mSLOMOCO with 12 Vol-/Sli-mopa and PV regressors outperformed both VOLMOCO with 6 Vol-mopa and PV regressors and oSLOMOCO with 14 voxel-wise regressors. In tests of the 10 different motion patterns of SIMPACE datasets with 1× and 2× amplified intravolume motion, mSLOMOCO with 12 Vol-/Sli-mopa and PV regressors pipeline produced the average standard deviation (SD) of the residual time series signals in the gray matter (GM) smaller by 29% (1× amplified intravolume motion) and 45% (2× amplified intravolume motion) than VOLMOCO with 6 Vol-mopa and PV regressors pipeline. Also, mSLOMOCO with 12 Vol-/Sli-mopa and PV regressors pipeline outperformed oSLOMOCO with 14 voxelwise regressors pipeline, generating the average SD in GM smaller by 28% (1× amplified intravolume motion) and 31% (2× amplified intravolume motion) than oSLOMOCO with 14 voxel-wise regressors pipeline. The novel PV regressor also effectively reduced residual motion artifact as a motion nuisance regressor after both VOLMOCO and mSLOMOCO.

Simulating rigid head motion artifacts on brain magnitude MRI data-Outcome on image quality and segmentation of the cerebral cortex.

Magnetic Resonance Imaging (MRI) datasets from epidemiological studies often show a lower prevalence of motion artifacts than what is encountered in clinical practice. These artifacts can be unevenly distributed between subject groups and studies which introduces a bias that needs addressing when augmenting data for machine learning purposes. Since unreconstructed multi-channel k-space data is typically not available for population-based MRI datasets, motion simulations must be performed using signal magnitude data. There is thus a need to systematically evaluate how realistic such magnitude-based simulations are. We performed magnitude-based motion simulations on a dataset (MR-ART) from 148 subjects in which real motion-corrupted reference data was also available. The similarity of real and simulated motion was assessed by using image quality metrics (IQMs) including Coefficient of Joint Variation (CJV), Signal-to-Noise-Ratio (SNR), and Contrast-to-Noise-Ratio (CNR). An additional comparison was made by investigating the decrease in the Dice-Sørensen Coefficient (DSC) of automated segmentations with increasing motion severity. Segmentation of the cerebral cortex was performed with 6 freely available tools: FreeSurfer, BrainSuite, ANTs, SAMSEG, FastSurfer, and SynthSeg+. To better mimic the real subject motion, the original motion simulation within an existing data augmentation framework (TorchIO), was modified. This allowed a non-random motion paradigm and phase encoding direction. The mean difference in CJV/SNR/CNR between the real motion-corrupted images and our modified simulations (0.004±0.054/-0.7±1.8/-0.09±0.55) was lower than that of the original simulations (0.015±0.061/0.2±2.0/-0.29±0.62). Further, the mean difference in the DSC between the real motion-corrupted images was lower for our modified simulations (0.03±0.06) compared to the original simulations (-0.15±0.09). SynthSeg+ showed the highest robustness towards all forms of motion, real and simulated. In conclusion, reasonably realistic synthetic motion artifacts can be induced on a large-scale when only magnitude MR images are available to obtain unbiased data sets for the training of machine learning based models.

Automatic brain MRI motion artifact detection based on end-to-end deep learning is similarly effective as traditional machine learning trained on image quality metrics.

Head motion artifacts in magnetic resonance imaging (MRI) are an important confounding factor concerning brain research as well as clinical practice. For this reason, several machine learning-based methods have been developed for the automatic quality control of structural MRI scans. Deep learning offers a promising solution to this problem, however, given its data-hungry nature and the scarcity of expert-annotated datasets, its advantage over traditional machine learning methods in identifying motion-corrupted brain scans is yet to be determined. In the present study, we investigated the relative advantage of the two methods in structural MRI quality control. To this end, we collected publicly available T1-weighted images and scanned subjects in our own lab under conventional and active head motion conditions. The quality of the images was rated by a team of radiologists from the point of view of clinical diagnostic use. We present a relatively simple, lightweight 3D convolutional neural network trained in an end-to-end manner that achieved a test set (N=411) balanced accuracy of 94.41% in classifying brain scans into clinically usable or unusable categories. A support vector machine trained on image quality metrics achieved a balanced accuracy of 88.44% on the same test set. Statistical comparison of the two models yielded no significant difference in terms of confusion matrices, error rates, or receiver operating characteristic curves. Our results suggest that these machine learning methods are similarly effective in identifying severe motion artifacts in brain MRI scans, and underline the efficacy of end-to-end deep learning-based systems in brain MRI quality control, allowing the rapid evaluation of diagnostic utility without the need for elaborate image pre-processing.

Reliability and validity of brain-gastric phase synchronization.

Recent studies have reported that various brain regions, mainly sensory, unimodal regions, display phase synchronization with the stomach's slow (0.05 Hz) myoelectrical rhythm. These gastric-brain interactions have broad implications, from feeding behavior to functional gastrointestinal disorders. However, in contrast to other interoceptive signals (e.g., heart rate) and their relation to the brain, little is known about the reliability of these gastric-brain interactions, their robustness to artifacts such as motion, and whether they can be generalized to new samples. Here we examined these aspects in 43 subjects that had undergone multiple runs of concurrent electrogastrography (EGG), brain fMRI, and pulse oximetry. We also repeated all analyses in an open dataset of a highly sampled individual. We found a set of brain regions that were coupled with the EGG signal after controlling for non-grey matter (GM) signals, head motion, and cardiac artifacts. These regions exhibited significant overlap with previous work. However, we also showed that prior to confound regression, the spatial extent of the gastric network was largely overestimated. Finally, we found substantial test-retest reliability in both the brain and the gastric signals when estimated alone, but not for measures of gastric-brain synchrony. Together, these results provide methodological scaffolding for future research into brain-stomach interactions and for a better understanding of the role of the gastric network.

GNN-Based Embedded Framework for Consumer Affect Recognition Using Thermal Facial ROIs

Recently consumer electronics products for the human device or machine interaction in smart healthcare systems have been widespread due to progress in health monitoring hardware and remote diagnostic services. Affect recognition through thermal facial signatures is significant in real-time Human-machine Interaction (HMI) studies. The distribution of facial skin temperature displays explicit characteristics related to affect arousal. During human interacts with a machine or computer, it is challenging to detect face and track the facial regions of interest (ROI) in a thermal video because of head motion artifacts. Our proposed embedded portable HMI product integrated with the required hardware and deep learning architecture is used to recognize the human affect in real-time. The transfer learning approach (Faster R-CNN) and the Multiple Instance Learning (MIL) algorithm are applied to thermal video for thermal face and ROIs detection and tracking. The multivariate time series (MTS) features generated from specific ROIs' calculated mean intensity variations. This study proposes a k-Nearest Neighbor (k-NN) algorithm-based graph neural network (GNN) architecture that utilizes MTS features to recognize affects in the facial thermal video. The effectiveness of the proposed algorithm for the In-house and NVIE thermal data-set gives better accuracy of 76.05% and 71.91% compared with state-of-the-art approaches.

Deep Learning Registration with Scan‐temporal Consistency May Improve Detection of Alzheimer’s Disease Progression

AbstractBackgroundStructural changes in Alzheimer’s disease (AD) can be detected as atrophy in the medial temporal lobe (MTL), which is normally studied by applying volumetric or deformation‐based morphometry (DBM) to longitudinal scans. However, conventional DMB methods are computationally intensive and may not estimate the atrophy accurately due to the noise in the longitudinal images, e.g., head motion or MRI artifacts. We hypothesize that deep learning models can be trained to estimate atrophy from longitudinal MRI scans and are more sensitive to biological changes rather than artifactual.MethodTwo models were trained on longitudinal T1 MRI from 155 ADNI participants and tested on 326 participants. First, a deep learning‐based registration model Voxelmorph (Balakrishnan et al., 2019) was applied to generate a deformation field to calculate MTL atrophy rate for each pair of images. Hypothesizing that noise is independent of time while neurodegeneration is time dependent, we then extended Voxelmorph to incorporate a loss that encourages the model to correctly infer the input scan temporal order (STO). In addition, in order to preserve the deformable registration nature of Voxelmorph, it’s weights were held fixed during network training, and instead a U‐Net reconstruction network was introduced, to synthesize inputs to Voxelmorph. Models were compared with a DBM method ALOHA (Das et al., 2012).ResultVoxelmorph generated atrophy measurements comparable to ALOHA in terms of differentiating AD stages (Figure 2) and STO consistency (Table 2). Voxelmorph + STO model has increased STO consistency and can more significantly differentiate disease stages (in absolute terms), especially between the normal controls and preclinical AD.ConclusionDeep learning‐based registration method Voxelmorph achieves comparable performance in longitudinal analysis of subtle changes as in DBM method ALOHA. With the introduction of a scan temporal order loss and reconstruction network, the model achieves higher sensitivity to disease stage, potentially because it learns to discount longitudinal changes that are related to noise and artifact. This may lead to more sensitive biomarkers for disease monitoring in clinical trials of early AD.

An fMRI dataset for whole-body somatotopic mapping in humans

The somatotopic representation of the body is a well-established organizational principle in the human brain. Classic invasive direct electrical stimulation for somatotopic mapping cannot be used to map the whole-body topographical representation of healthy individuals. Functional magnetic resonance imaging (fMRI) has become an indispensable tool for the noninvasive investigation of somatotopic organization of the human brain using voluntary movement tasks. Unfortunately, body movements during fMRI scanning often cause large head motion artifacts. Consequently, there remains a lack of publicly accessible fMRI datasets for whole-body somatotopic mapping. Here, we present public high-resolution fMRI data to map the somatotopic organization based on motor movements in a large cohort of healthy adults (N = 62). In contrast to previous studies that were mostly designed to distinguish few body representations, most body parts are considered, including toe, ankle, leg, finger, wrist, forearm, upper arm, jaw, lip, tongue, and eyes. Moreover, the fMRI data are denoised by combining spatial independent component analysis with manual identification to clean artifacts from head motion associated with body movements.

Ultra-High-Field 7 T Magnetic Resonance Imaging Including Dynamic and Static Contrast-Enhanced T1-Weighted Imaging Improves Detection of Secreting Pituitary Microadenomas.

A prospective preoperative evaluation of 7 T ultra-high-field magnetic resonance imaging (MRI) in patients with suspected pituitary microadenomas for both adenoma detection and intrasellar localization compared with 3 T MRI was carried out. Patients underwent prospective preoperative standardized 3 and 7 T MRI. A distinct qualitative (lesion detection, intrasellar lesion location) and quantitative (lesion diameters, T1/T2 signal intensity ratio of the lesion to normal pituitary gland tissue) analysis was performed, along with an evaluation of image quality (IQ) regarding overall IQ, anatomical parameters, and artifacts; the findings of the qualitative analysis were compared with intraoperative findings and endocrinological outcomes. Sixteen patients (mean age, 43 ± 16 years; 13 women) with pituitary microadenomas were included. Using 7 T MRI allowed the detection of 15 microadenomas-3 more than 3 T MRI. In addition, 7 T MRI allowed more precise lesion localization with 93.75% (15/16) agreement with intraoperative findings, compared with 75% (12/16) agreement using 3 T MRI. Lesion diameters showed no significant difference between 3 and 7 T MRI. T1 and T2 signal intensity ratio between microadenomas and normal pituitary gland tissue were higher in 7 T MRI than in 3 T MRI. The overall IQ and the IQ of each anatomical parameter of 7 T MRI were rated higher than those of 3 T MRI. No significant differences in susceptibility or head motion artifacts were observed between 3 and 7 T MRI; however, 7 T MRI was more susceptible to pulsation artifacts. Ultra-high-field MRI surpasses 3 T MRI in pituitary microadenoma detection and enables more precise delineation with higher correlation with intraoperative findings. Thus, 7 T sellar imaging is a promising option-especially in previously magnetic resonance-negative patients with endocrinologically confirmed hormone oversecretion-and helps reduce the need for invasive diagnostics.

Gradual Restraint Habituation for Awake Functional Magnetic Resonance Imaging Combined With a Sparse Imaging Paradigm Reduces Motion Artifacts and Stress Levels in Rodents.

Functional magnetic resonance imaging, as a non-invasive technique, offers unique opportunities to assess brain function and connectivity under a broad range of applications, ranging from passive sensory stimulation to high-level cognitive abilities, in awake animals. This approach is confounded, however, by the fact that physical restraint and loud unpredictable acoustic noise must inevitably accompany fMRI recordings. These factors induce marked stress in rodents, and stress-related elevations of corticosterone levels are known to alter information processing and cognition in the rodent. Here, we propose a habituation strategy that spans specific stages of adaptation to restraint, MRI noise, and confinement stress in awake rats and circumvents the need for surgical head restraint. This habituation protocol results in stress levels during awake fMRI that do not differ from pre-handling levels and enables stable image acquisition with very low motion artifacts. For this, rats were gradually trained over a period of three weeks and eighteen training sessions. Stress levels were assessed by analysis of fecal corticosterone metabolite levels and breathing rates. We observed significant drops in stress levels to below pre-handling levels at the end of the habituation procedure. During fMRI in awake rats, after the conclusion of habituation and using a non-invasive head-fixation device, breathing was stable and head motion artifacts were minimal. A task-based fMRI experiment, using acoustic stimulation, conducted 2 days after the end of habituation, resulted in precise whole brain mapping of BOLD signals in the brain, with clear delineation of the expected auditory-related structures. The active discrimination by the animals of the acoustic stimuli from the backdrop of scanner noise was corroborated by significant increases in BOLD signals in the thalamus and reticular formation. Taken together, these data show that effective habituation to awake fMRI can be achieved by gradual and incremental acclimatization to the experimental conditions. Subsequent BOLD recordings, even during superimposed acoustic stimulation, reflect low stress-levels, low motion and a corresponding high-quality image acquisition. Furthermore, BOLD signals obtained during fMRI indicate that effective habituation facilitates selective attention to sensory stimuli that can in turn support the discrimination of cognitive processes in the absence of stress confounds.

A deep learning method for eliminating head motion artifacts in computed tomography.

Involuntary patient movement results in data discontinuities during computed tomography (CT) scans which lead to a serious degradation in the image quality. In this paper, we specifically address artifacts induced by patient motion during a head scan. Instead of trying to solve an inverse problem, we developed a motion simulation algorithm to synthesize images with motion-induced artifacts. The artifacts induced by rotation, translation, oscillation and any possible combination are considered. Taking advantage of the powerful learning ability of neural networks, we designed a novel 3D network structure with both a large reception field and a high image resolution to map the artifact-free images from artifact-contaminated images. Quantitative results of the proposed method were evaluated against the results of U-Net and proposed networks without dilation structure. Thirty sets of motion contaminated images from two hospitals were selected to do a clinical evaluation. Facilitating the training dataset with artifacts induced by variable motion patterns and the neural network, the artifact can be removed with good performance. Validation dataset with simulated random motion pattern showed outperformed image correction, and quantitative results showed the proposed network had the lowest normalized root-mean-square error, highest peak signal-to-noise ratio and structure similarity, indicating our network gave the best approximation of gold standard. Clinical image processing results further confirmed the effectiveness of our method. We proposed a novel deep learning-based algorithm to eliminate motion artifacts. The convolutional neural networks trained with synthesized image pairs achieved promising results in artifacts reduction. The corrected images increased the diagnostic confidence compared with artifacts contaminated images. We believe that the correction method can restore the ability to successfully diagnose and avoid repeated CT scans in certain clinical circumstances.

Evaluating the sensitivity of functional connectivity measures to motion artifact in resting-state fMRI data

Functional connectivity (FC) networks are typically inferred from resting-state fMRI data using the Pearson correlation between BOLD time series from pairs of brain regions. However, alternative methods of estimating functional connectivity have not been systematically tested for their sensitivity or robustness to head motion artifact. Here, we evaluate the sensitivity of eight different functional connectivity measures to motion artifact using resting-state data from the Human Connectome Project. We report that FC estimated using full correlation has a relatively high residual distance-dependent relationship with motion compared to partial correlation, coherence, and information theory-based measures, even after implementing rigorous methods for motion artifact mitigation. This disadvantage of full correlation, however, may be offset by higher test-retest reliability, fingerprinting accuracy, and system identifiability. FC estimated by partial correlation offers the best of both worlds, with low sensitivity to motion artifact and intermediate system identifiability, with the caveat of low test-retest reliability and fingerprinting accuracy. We highlight spatial differences in the sub-networks affected by motion with different FC metrics. Further, we report that intra-network edges in the default mode and retrosplenial temporal sub-networks are highly correlated with motion in all FC methods. Our findings indicate that the method of estimating functional connectivity is an important consideration in resting-state fMRI studies and must be chosen carefully based on the parameters of the study.

A Human–Computer Interaction framework for emotion recognition through time-series thermal video sequences

Infrared-Thermal Imaging is a non-contact mechanism for psychophysiological research and application in Human–Computer Interaction (HCI). Real-time detection of the face and tracking the Regions of Interest (ROI) in the thermal video during HCI is challenging due to head motion artifacts. This paper proposes a three-stage HCI framework for computing the multivariate time-series thermal video sequences to recognize human emotion and provides distraction suggestions. The first stage comprises of face, eye, and nose detection using a Faster R-CNN (region-based convolutional neural network) architecture and used Multiple Instance Learning (MIL) algorithm for tracking the face ROIs across the thermal video. The mean intensity of ROIs is calculated which forms a multivariate time series (MTS) data. In the second stage, the smoothed MTS data are passed to the Dynamic Time Warping (DTW) algorithm to classify emotional states elicited by video stimulus. During HCI, our proposed framework provides relevant suggestions from a psychological and physical distraction perspective in the third stage. Our proposed approach signifies better accuracy in comparison with other classification methods and thermal data-sets.

Pneumatic artificial muscle-based stimulator for passive functional magnetic resonance imaging sensorimotor mapping in patients with brain tumours

BackgroundTwo concerns with respect to pre-operative task-based motor functional magnetic resonance imaging (fMRI) in patients with brain tumours are inadequate performance due to patients' impaired motor function and head motion artefacts. New methodIn the present study we validate the use of a stimulator based on a pneumatic artificial muscle (PAM) for fMRI mapping of the primary sensorimotor (SM1) cortex in twenty patients with rolandic or perirolandic brain tumours. All patients underwent both active and passive motor block-design fMRI paradigms, performing comparable active and passive PAM-induced flexion-extensions of the icontralesional index finger. ResultsPAM-induced movements resulted in a significant BOLD signal increase in contralateral primary motor (M1) and somatosensory (S1) cortices in 18/20 and 19/20 (p<.05 FWE corrected in 16/18 and 18/19) patients, versus 18/20 and 16/20 (p<.05 FWE corrected) during active movements. The two patients in whom the PAM-based stimulator failed to induce any significant BOLD signal change in the contralateral M1 cortex differed from the two in whom active motion was conversely ineffective. At the group level, no significant difference in contrast magnitude was observed within the contralateral SM1 cortex when comparing active with passive movements. During passive movements, head motion was significantly reduced. Comparison with existing method(s) As compared to the several robotic devices for passive motion that were introduced in the past decades, our PAM-based stimulator appears smaller, handier, and easier to use. ConclusionThe use of PAM-based stimulators should be included in routine pre-operative fMRI protocols along with active paradigms in such patients' population.

Measures of prefrontal functional near-infrared spectroscopy in visuomotor learning

Functional near-infrared spectroscopy (fNIRS) is a promising technique for non-invasively assessing cortical brain activity during learning. This technique is safe, portable, and, compared to other imaging techniques, relatively robust to head motion, ocular and muscular artifacts and environmental noise. Moreover, the spatial resolution of fNIRS is superior to electroencephalography (EEG), a more commonly applied technique for measuring brain activity non-invasively during learning. Outcomes from fNIRS measures during learning might therefore be both sensitive to learning and to feedback on learning, in a different way than EEG. However, few studies have examined fNIRS outcomes in learning and no study to date additionally examined the effects of feedback. To address this apparent gap in the literature, the current study examined prefrontal cortex activity measured through fNIRS during visuomotor learning and how this measure is affected by task feedback. Activity in the prefrontal cortex decreased over the course of learning while being unaffected by task feedback. The findings demonstrate that fNIRS in the prefrontal cortex is valuable for assessing visuomotor learning and that this measure is robust to task feedback. The current study highlights the potential of fNIRS in assessing learning even under different task feedback conditions.

Noise removal in resting-state and task fMRI: functional connectivity and activation maps

Objective. Blood-oxygenated-level dependent (BOLD)-based functional magnetic resonance imaging (fMRI) is a widely used non-invasive tool for mapping brain function and connectivity. However, the BOLD signal is highly affected by non-neuronal contributions arising from head motion, physiological noise and scanner artefacts. Therefore, it is necessary to recover the signal of interest from the other noise-related fluctuations to obtain reliable functional connectivity (FC) results. Several pre-processing pipelines have been developed, mainly based on nuisance regression and independent component analysis (ICA). The aim of this work was to investigate the impact of seven widely used denoising methods on both resting-state and task fMRI. Approach. Task fMRI can provide some ground truth given that the task administered has well established brain activations. The resulting cleaned data were compared using a wide range of measures: motion evaluation and data quality, resting-state networks and task activations, FC. Main results. Improved signal quality and reduced motion artefacts were obtained with all advanced pipelines, compared to the minimally pre-processed data. Larger variability was observed in the case of brain activation and FC estimates, with ICA-based pipelines generally achieving more reliable and accurate results. Significance. This work provides an evidence-based reference for investigators to choose the most appropriate method for their study and data.

Voxelwise optimization of hemodynamic lags to improve regional CVR estimates in breath-hold fMRI.

Cerebrovascular Reactivity (CVR), the responsiveness of blood vessels to a vasodilatory stimulus, is an important indicator of cerebrovascular health. Assessing CVR with fMRI, we can measure the change in the Blood Oxygen Level Dependent (BOLD) response induced by a change in CO2 pressure (%BOLD/mmHg). However, there exists a temporal offset between the recorded CO2 pressure and the local BOLD response, due to both measurement and physiological delays. If this offset is not corrected for, voxel-wise CVR values will not be accurate. In this paper, we propose a framework for mapping hemodynamic lag in breath-hold fMRI data. As breath-hold tasks drive task-correlated head motion artifacts in BOLD fMRI data, our framework for lag estimation fits a model that includes polynomial terms and head motion parameters, as well as a shifted variant of the CO2 regressor (±9 s in 0.3 s increments), and the hemodynamic lag at each voxel is the shift producing the maximum total model R2 within physiological constraints. This approach is evaluated in 8 subjects with multi-echo fMRI data, resulting in robust maps of hemodynamic delay that show consistent regional variation across subjects, and improved contrast-to-noise compared to methods where motion regression is ignored or performed earlier in preprocessing.Clinical Relevance- We map hemodynamic lag using breathhold fMRI, providing insight into vascular transit times and improving the regional accuracy of cerebrovascular reactivity measurements.

Improved motion correction for functional MRI using an omnibus regression model.

Head motion during functional Magnetic Resonance Imaging acquisition can significantly contaminate the neural signal and introduce spurious, distance-dependent changes in signal correlations. This can heavily confound studies of development, aging, and disease. Previous approaches to suppress head motion artifacts have involved sequential regression of nuisance covariates, but this has been shown to reintroduce artifacts. We propose a new motion correction pipeline using an omnibus regression model that avoids this problem by simultaneously regressing out multiple artifacts using the best performing algorithms to estimate each artifact. We quantitatively evaluate its motion artifact suppression performance against sequential regression pipelines using a large heterogeneous dataset (n=151) which includes high-motion subjects and multiple disease phenotypes. The proposed concatenated regression pipeline significantly reduces the association between head motion and functional connectivity while significantly outperforming the traditional sequential regression pipelines in eliminating distance-dependent head motion artifacts.