The inner structures of lakes can be revealed using volume visualization algorithms since lakes are three-dimensional objects that are explored by taking samples at various stations and at different depths. These algorithms did not exist 20 years ago, they could only be run on supercomputers 10 years ago, on workstations 3 years ago, and now they can be run on personal computers. Using computer graphics it is now possible to combine data, their three-dimensional location, and lake topography to create images of water quality patterns which supersede conventional surface, two-dimensional, graphics. Through solid modeling, temperature data collected on 28 May 1990 and 8 August 1990 in Hamilton Harbour, Lake Ontario, are mapped into voxels and projected onto two-dimensional screens. Various three-dimensional representations of temperature data are displayed including water masses with temperatures of less than 12°C, 13 to 14°C, 16°C to 17°C, and greater than 23°C. The calculation of the 3D representations allows the computation of volumetric properties, e.g., masses, since each voxel has water quality values associated with it and these values can be summed or elaborated numerically as needs arise. For example the harbor has a volume of 254 × 10 6 m 3, and the water mass on 28 May 1990 at 12–13°C had a complex three-dimensional shape with a volume of 61 × 10 6 m 3. A third benefit of visualization is that the data can be viewed interactively from different viewpoints thus increasing the interaction between scientist and the data. These methods should also be able to be used in other limnological applications such as visualization of sediments, algal blooms, and other biological and chemical data.